prot_Ecto-sp13_S_contig58070.16260.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig58070.16260.1
Unique Nameprot_Ecto-sp13_S_contig58070.16260.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length55
Homology
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.500e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0
Query:    5 SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR
Sbjct:   40 SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 90          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A3L6VRZ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VRZ9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.660e-12
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    1 AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            AA+S  FP+DP L+RTFRG  + V  +SY+P+M+QL S + D  +M+W F+ Q+R
Sbjct:   26 AASSDCFPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMR 80          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A418F511_9STRA (Macro domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F511_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.370e-11
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 0
Query:    1 AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            AA+S  FP+DP L+RTFRG  + V  +SY+P+M+QL S + D  +M+W F+ Q+R
Sbjct:   26 AASSDCFPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMR 80          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A3R6XQU3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XQU3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.570e-11
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 0
Query:    1 AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            A +S  FP+DP L+RTFRG  + V  +SYSP+M+QL S + D  +M+W F+ Q+R
Sbjct:   26 AVSSDCFPMDPSLQRTFRGHKSGVECLSYSPNMRQLASGSLDCTVMIWNFKPQMR 80          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: R1F002_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F002_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0
Query:    8 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            P+DP LER+FRG    V+ VS+SP MKQLVS   D  +MVW F+ Q+R
Sbjct:    6 PMDPALERSFRGHKDGVSSVSFSPTMKQLVSGGLDGTVMVWNFKMQMR 53          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: UPI001CF2113B (POC1 centriolar protein homolog B n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF2113B)

HSP 1 Score: 53.5 bits (127), Expect = 7.540e-7
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 0
Query:   10 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            DP L+R F+G   AVT V +SPD KQL SSA D  +MVW F+ Q R
Sbjct:    7 DPALKRHFKGHKDAVTCVDFSPDNKQLASSAADAFVMVWNFKPQSR 52          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A8C5T6B9_9PASS (POC1 centriolar protein A n=5 Tax=Malurus cyaneus samueli TaxID=2593467 RepID=A0A8C5T6B9_9PASS)

HSP 1 Score: 51.6 bits (122), Expect = 3.600e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 0
Query:    8 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            P+DP LER F+G   A+T V +S   KQL S + D+ LMVW+ + Q+R
Sbjct:   33 PLDPSLERHFKGHRDAITSVDFSFKKKQLASGSMDSCLMVWSMKPQMR 80          
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A3Q2QR81_FUNHE (POC1 centriolar protein A n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QR81_FUNHE)

HSP 1 Score: 48.5 bits (114), Expect = 4.460e-5
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 0
Query:    6 IFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 55
            + P+DP LER F+G    VT V +S + KQ+ + + D+ +M+W  + Q+R
Sbjct:  125 VTPLDPTLERHFKGHRHTVTSVDFSCNNKQIATGSVDSCVMIWNMKPQMR 174          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSH2_ECTSI1.500e-25100.00Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A3L6VRZ9_9STRA2.660e-1249.09Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A418F511_9STRA6.370e-1149.09Macro domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A3R6XQU3_9STRA8.570e-1149.09Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
R1F002_EMIHU9.320e-1056.25Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
UPI001CF2113B7.540e-756.52POC1 centriolar protein homolog B n=2 Tax=Bufo Tax... [more]
A0A8C5T6B9_9PASS3.600e-647.92POC1 centriolar protein A n=5 Tax=Malurus cyaneus ... [more]
A0A3Q2QR81_FUNHE4.460e-538.00POC1 centriolar protein A n=3 Tax=Fundulus heteroc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 10..49
e-value: 3.9E-5
score: 33.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 17..55
score: 12.213
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..55
e-value: 3.4E-7
score: 31.3
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 17..55
score: 11.497
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 12..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58070contigEcto-sp13_S_contig58070:684..848 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58070.16260.1mRNA_Ecto-sp13_S_contig58070.16260.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig58070 684..848 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig58070.16260.1 ID=prot_Ecto-sp13_S_contig58070.16260.1|Name=mRNA_Ecto-sp13_S_contig58070.16260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTF
RAQLR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf