mRNA_Ecto-sp13_S_contig58070.16260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig58070.16260.1
Unique NamemRNA_Ecto-sp13_S_contig58070.16260.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: D8LSH2_ECTSI (Lissencephaly protein 1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSH2_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 1.500e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:   13 SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR
Sbjct:   40 SIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 90
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A3L6VRZ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VRZ9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.660e-12
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            AA+S  FP+DP L+RTFRG  + V  +SY+P+M+QL S + D  +M+W F+ Q+R
Sbjct:   26 AASSDCFPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMR 80
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A418F511_9STRA (Macro domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F511_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 6.370e-11
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            AA+S  FP+DP L+RTFRG  + V  +SY+P+M+QL S + D  +M+W F+ Q+R
Sbjct:   26 AASSDCFPMDPSLQRTFRGHKSGVECLSYNPNMRQLASGSLDCTVMIWNFKPQMR 80
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A3R6XQU3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XQU3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 8.570e-11
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            A +S  FP+DP L+RTFRG  + V  +SYSP+M+QL S + D  +M+W F+ Q+R
Sbjct:   26 AVSSDCFPMDPSLQRTFRGHKSGVECLSYSPNMRQLASGSLDCTVMIWNFKPQMR 80
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: R1F002_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F002_EMIHU)

HSP 1 Score: 61.6 bits (148), Expect = 9.320e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   22 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            P+DP LER+FRG    V+ VS+SP MKQLVS   D  +MVW F+ Q+R
Sbjct:    6 PMDPALERSFRGHKDGVSSVSFSPTMKQLVSGGLDGTVMVWNFKMQMR 53
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: UPI001CF2113B (POC1 centriolar protein homolog B n=2 Tax=Bufo TaxID=8383 RepID=UPI001CF2113B)

HSP 1 Score: 53.5 bits (127), Expect = 7.540e-7
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   28 DPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            DP L+R F+G   AVT V +SPD KQL SSA D  +MVW F+ Q R
Sbjct:    7 DPALKRHFKGHKDAVTCVDFSPDNKQLASSAADAFVMVWNFKPQSR 52
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A8C5T6B9_9PASS (POC1 centriolar protein A n=5 Tax=Malurus cyaneus samueli TaxID=2593467 RepID=A0A8C5T6B9_9PASS)

HSP 1 Score: 51.6 bits (122), Expect = 3.600e-6
Identity = 23/48 (47.92%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   22 PVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            P+DP LER F+G   A+T V +S   KQL S + D+ LMVW+ + Q+R
Sbjct:   33 PLDPSLERHFKGHRDAITSVDFSFKKKQLASGSMDSCLMVWSMKPQMR 80
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BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Match: A0A3Q2QR81_FUNHE (POC1 centriolar protein A n=3 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A3Q2QR81_FUNHE)

HSP 1 Score: 48.5 bits (114), Expect = 4.460e-5
Identity = 19/50 (38.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   16 IFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTFRAQLR 165
            + P+DP LER F+G    VT V +S + KQ+ + + D+ +M+W  + Q+R
Sbjct:  125 VTPLDPTLERHFKGHRHTVTSVDFSCNNKQIATGSVDSCVMIWNMKPQMR 174
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig58070.16260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSH2_ECTSI1.500e-25100.00Lissencephaly protein 1-like n=1 Tax=Ectocarpus si... [more]
A0A3L6VRZ9_9STRA2.660e-1249.09Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A418F511_9STRA6.370e-1149.09Macro domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A3R6XQU3_9STRA8.570e-1149.09Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
R1F002_EMIHU9.320e-1056.25Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
UPI001CF2113B7.540e-756.52POC1 centriolar protein homolog B n=2 Tax=Bufo Tax... [more]
A0A8C5T6B9_9PASS3.600e-647.92POC1 centriolar protein A n=5 Tax=Malurus cyaneus ... [more]
A0A3Q2QR81_FUNHE4.460e-538.00POC1 centriolar protein A n=3 Tax=Fundulus heteroc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig58070contigEcto-sp13_S_contig58070:684..848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score105.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LSH2
Preferred namePOC1A
Model size165
KEGG koko:K16482
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000226,GO:0000278,GO:0000922,GO:0001501,GO:0002062,GO:0002063,GO:0003413,GO:0003416,GO:0003417,GO:0003418,GO:0003431,GO:0003433,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007275,GO:0007276,GO:0007283,GO:0008150,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0031023,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0035265,GO:0036064,GO:0040007,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045787,GO:0046605,GO:0046607,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048609,GO:0048705,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051216,GO:0051493,GO:0051495,GO:0051704,GO:0051726,GO:0060271,GO:0060348,GO:0060349,GO:0060350,GO:0060351,GO:0061448,GO:0065007,GO:0070507,GO:0070925,GO:0071840,GO:0090068,GO:0098868,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902850,GO:1903047,GO:1905515
Exons1
EggNOG free text desc.growth plate cartilage chondrocyte development
EggNOG OGs2CMZ3@1,2QSVJ@2759
Cds size165
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463806.1631186-CDS-Ecto-sp13_S_contig58070:683..8481681463806.1631186-CDS-Ecto-sp13_S_contig58070:683..848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig58070 684..848 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig58070.16260.1prot_Ecto-sp13_S_contig58070.16260.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig58070 684..848 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig58070.16260.1

>prot_Ecto-sp13_S_contig58070.16260.1 ID=prot_Ecto-sp13_S_contig58070.16260.1|Name=mRNA_Ecto-sp13_S_contig58070.16260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
AAASSIFPVDPELERTFRGRGAAVTGVSYSPDMKQLVSSATDNNLMVWTF
RAQLR
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mRNA from alignment at Ecto-sp13_S_contig58070:684..848+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig58070.16260.1 ID=mRNA_Ecto-sp13_S_contig58070.16260.1|Name=mRNA_Ecto-sp13_S_contig58070.16260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58070:684..848+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCTCCTCCATCTTCCCGGTGGACCCGGAGCTAGAGCGGACCTT
TCGAGGACGCGGGGCGGCGGTGACGGGCGTGTCGTACTCTCCCGACATGA
AACAGCTCGTGTCTTCGGCGACCGACAATAACCTCATGGTGTGGACGTTC
CGGGCCCAACTGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig58070:684..848+

>mRNA_Ecto-sp13_S_contig58070.16260.1 ID=mRNA_Ecto-sp13_S_contig58070.16260.1|Name=mRNA_Ecto-sp13_S_contig58070.16260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig58070:684..848+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCTCCTCCATCTTCCCGGTGGACCCGGAGCTAGAGCGGACCTT
TCGAGGACGCGGGGCGGCGGTGACGGGCGTGTCGTACTCTCCCGACATGA
AACAGCTCGTGTCTTCGGCGACCGACAATAACCTCATGGTGTGGACGTTC
CGGGCCCAACTGCGG
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