prot_Ecto-sp13_S_contig11903.1624.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11903.1624.1
Unique Nameprot_Ecto-sp13_S_contig11903.1624.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length322
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11903.1624.1 vs. uniprot
Match: D8LRG8_ECTSI (Poly (ADP-ribose) polymerase family, member 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG8_ECTSI)

HSP 1 Score: 487 bits (1254), Expect = 6.410e-167
Identity = 281/324 (86.73%), Postives = 285/324 (87.96%), Query Frame = 0 
Query:    1 LVLCVSA--GSTCRPGGPEQVGEEVTSSKEELLATLIRPTVLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEGEGGAARARSAAEAVLAAIKEDPLGADLILALLSMAVSSYRRDTVSTPFPKQLEPPGGSKRAYASFISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALHFVLVLQPARLRNSASKNPARSAGTASCGARAPSSCFASSGAGVAGFKARFPAAGFGDPSTASGGSGAERGGXXXXXXXXXXXXGASTQLGDVPTYAFEAVLPSDPAFDAQVRL 322
            L +CV A  GS CRPGGPEQVGEEVTSSKEELL TL RP +LKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRA VTTVLQCVKREA SASVLSSGDKGAEG GGAARAR AAEAVLAAIKEDPLGADL+LALLSMAVSSYRRDTVSTPFPKQLE PGGSKRAYA+FISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALH VLVLQPARLRN ASKN ARSA TASCGARA SS  ASSGAGVAG KARFPAAG G PSTASG SG          XXXXXXX AS QLGDVPTYAFE VLPSDPAFDAQ  L
Sbjct:   42 LYVCVQAPAGSNCRPGGPEQVGEEVTSSKEELLNTLTRPKLLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAVVTTVLQCVKREAASASVLSSGDKGAEGGGGAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGGSKRAYAAFISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALHLVLVLQPARLRNLASKNRARSAATASCGARASSSWSASSGAGVAGLKARFPAAGLGVPSTASGRSG---------DXXXXXXXXASAQLGDVPTYAFEVVLPSDPAFDAQAEL 356
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BLAST of mRNA_Ecto-sp13_S_contig11903.1624.1 vs. uniprot
Match: A0A6H5L4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P7_9PHAE)

HSP 1 Score: 454 bits (1169), Expect = 5.180e-154
Identity = 261/324 (80.56%), Postives = 272/324 (83.95%), Query Frame = 0 
Query:    1 LVLCVSA--GSTCRPGGPEQVGEEVTSSKEELLATLIRPTVLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEGEGGAARARSAAEAVLAAIKEDPLGADLILALLSMAVSSYRRDTVSTPFPKQLEPPGGSKRAYASFISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALHFVLVLQPARLRNSASKNPARSAGTASCGARAPSSCFASSGAGVAGFKARFPAAGFGDPSTASGGSGAERGGXXXXXXXXXXXXGASTQLGDVPTYAFEAVLPSDPAFDAQVRL 322
            + +CV A  GS CRPG PEQV EEVT SKEELLATL  P +LKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEG GGAARAR AAEAVLAAIKEDPLGADL+LALLSMAVSSYRRDTVSTPFPKQLE PGGSKRAYA+FISCLEGIPSMLE +R     +VLKLPPVAVVALHFVLVLQPA+LRN ASKN ARSA TASCGA+         GAGVAG KARFPAAG G+ STASG SGA RGG            GASTQLGDVPTYAF+AVLP DPAFDAQ  L
Sbjct:   42 MYVCVQAPAGSNCRPGWPEQVSEEVTLSKEELLATLTPPKLLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEG-GGAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGGSKRAYAAFISCLEGIPSMLEFAR-----KVLKLPPVAVVALHFVLVLQPAKLRNRASKNRARSAATASCGAKXXXXXXXXXGAGVAGLKARFPAAGLGNMSTASGRSGAGRGGDGVDGG------GASTQLGDVPTYAFDAVLPGDPAFDAQAEL 353
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11903.1624.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRG8_ECTSI6.410e-16786.73Poly (ADP-ribose) polymerase family, member 8 n=1 ... [more]
A0A6H5L4P7_9PHAE5.180e-15480.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 322..322
NoneNo IPR availableGENE3D3.90.228.10coord: 119..244
e-value: 4.0E-8
score: 35.2
IPR041400PARP16 N-terminal domainPFAMPF18084ARTD15_Ncoord: 127..212
e-value: 2.5E-13
score: 50.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11903contigEcto-sp13_S_contig11903:373..3316 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11903.1624.1mRNA_Ecto-sp13_S_contig11903.1624.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11903 373..3316 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11903.1624.1 ID=prot_Ecto-sp13_S_contig11903.1624.1|Name=mRNA_Ecto-sp13_S_contig11903.1624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp
LVLCVSAGSTCRPGGPEQVGEEVTSSKEELLATLIRPTVLKIYFPPSLDQ
VPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASV
LSSGDKGAEGEGGAARARSAAEAVLAAIKEDPLGADLILALLSMAVSSYR
RDTVSTPFPKQLEPPGGSKRAYASFISCLEGIPSMLEMSRWTDAAQVLKL
PPVAVVALHFVLVLQPARLRNSASKNPARSAGTASCGARAPSSCFASSGA
GVAGFKARFPAAGFGDPSTASGGSGAERGGDGGDGGGGGDGGGASTQLGD
VPTYAFEAVLPSDPAFDAQVRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041400PARP16_N