mRNA_Ecto-sp13_S_contig11903.1624.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11903.1624.1
Unique NamemRNA_Ecto-sp13_S_contig11903.1624.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11903.1624.1 vs. uniprot
Match: D8LRG8_ECTSI (Poly (ADP-ribose) polymerase family, member 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRG8_ECTSI)

HSP 1 Score: 487 bits (1254), Expect = 6.410e-167
Identity = 281/324 (86.73%), Postives = 285/324 (87.96%), Query Frame = 1 
Query:    1 LVLCVSA--GSTCRPGGPEQVGEEVTSSKEELLATLIRPTVLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEGEGGAARARSAAEAVLAAIKEDPLGADLILALLSMAVSSYRRDTVSTPFPKQLEPPGGSKRAYASFISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALHFVLVLQPARLRNSASKNPARSAGTASCGARAPSSCFASSGAGVAGFKARFPAAGFGDPSTASGGSGAERGGXXXXXXXXXXXXGASTQLGDVPTYAFEAVLPSDPAFDAQVRL 966
            L +CV A  GS CRPGGPEQVGEEVTSSKEELL TL RP +LKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRA VTTVLQCVKREA SASVLSSGDKGAEG GGAARAR AAEAVLAAIKEDPLGADL+LALLSMAVSSYRRDTVSTPFPKQLE PGGSKRAYA+FISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALH VLVLQPARLRN ASKN ARSA TASCGARA SS  ASSGAGVAG KARFPAAG G PSTASG SG          XXXXXXX AS QLGDVPTYAFE VLPSDPAFDAQ  L
Sbjct:   42 LYVCVQAPAGSNCRPGGPEQVGEEVTSSKEELLNTLTRPKLLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAVVTTVLQCVKREAASASVLSSGDKGAEGGGGAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGGSKRAYAAFISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALHLVLVLQPARLRNLASKNRARSAATASCGARASSSWSASSGAGVAGLKARFPAAGLGVPSTASGRSG---------DXXXXXXXXASAQLGDVPTYAFEVVLPSDPAFDAQAEL 356
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BLAST of mRNA_Ecto-sp13_S_contig11903.1624.1 vs. uniprot
Match: A0A6H5L4P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4P7_9PHAE)

HSP 1 Score: 454 bits (1169), Expect = 5.180e-154
Identity = 261/324 (80.56%), Postives = 272/324 (83.95%), Query Frame = 1 
Query:    1 LVLCVSA--GSTCRPGGPEQVGEEVTSSKEELLATLIRPTVLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEGEGGAARARSAAEAVLAAIKEDPLGADLILALLSMAVSSYRRDTVSTPFPKQLEPPGGSKRAYASFISCLEGIPSMLEMSRWTDAAQVLKLPPVAVVALHFVLVLQPARLRNSASKNPARSAGTASCGARAPSSCFASSGAGVAGFKARFPAAGFGDPSTASGGSGAERGGXXXXXXXXXXXXGASTQLGDVPTYAFEAVLPSDPAFDAQVRL 966
            + +CV A  GS CRPG PEQV EEVT SKEELLATL  P +LKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEG GGAARAR AAEAVLAAIKEDPLGADL+LALLSMAVSSYRRDTVSTPFPKQLE PGGSKRAYA+FISCLEGIPSMLE +R     +VLKLPPVAVVALHFVLVLQPA+LRN ASKN ARSA TASCGA+         GAGVAG KARFPAAG G+ STASG SGA RGG            GASTQLGDVPTYAF+AVLP DPAFDAQ  L
Sbjct:   42 MYVCVQAPAGSNCRPGWPEQVSEEVTLSKEELLATLTPPKLLKIYFPPSLDQVPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASVLSSGDKGAEG-GGAARARLAAEAVLAAIKEDPLGADLVLALLSMAVSSYRRDTVSTPFPKQLESPGGSKRAYAAFISCLEGIPSMLEFAR-----KVLKLPPVAVVALHFVLVLQPAKLRNRASKNRARSAATASCGAKXXXXXXXXXGAGVAGLKARFPAAGLGNMSTASGRSGAGRGGDGVDGG------GASTQLGDVPTYAFDAVLPGDPAFDAQAEL 353
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11903.1624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRG8_ECTSI6.410e-16786.73Poly (ADP-ribose) polymerase family, member 8 n=1 ... [more]
A0A6H5L4P7_9PHAE5.180e-15480.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11903contigEcto-sp13_S_contig11903:373..3316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size966
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionPoly(ADP-ribose) polymerase, catalytic domain
Ec32 orthologEc-18_004480.1
Cds size966
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462629.4997683-CDS-Ecto-sp13_S_contig11903:372..7771681462629.4997683-CDS-Ecto-sp13_S_contig11903:372..777Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11903 373..777 -
1681462629.5090077-CDS-Ecto-sp13_S_contig11903:1355..14671681462629.5090077-CDS-Ecto-sp13_S_contig11903:1355..1467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11903 1356..1467 -
1681462629.5169446-CDS-Ecto-sp13_S_contig11903:1967..20761681462629.5169446-CDS-Ecto-sp13_S_contig11903:1967..2076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11903 1968..2076 -
1681462629.5248277-CDS-Ecto-sp13_S_contig11903:2354..25231681462629.5248277-CDS-Ecto-sp13_S_contig11903:2354..2523Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11903 2355..2523 -
1681462629.5326269-CDS-Ecto-sp13_S_contig11903:3145..33161681462629.5326269-CDS-Ecto-sp13_S_contig11903:3145..3316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11903 3146..3316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11903.1624.1prot_Ecto-sp13_S_contig11903.1624.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11903 373..3316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11903.1624.1

>prot_Ecto-sp13_S_contig11903.1624.1 ID=prot_Ecto-sp13_S_contig11903.1624.1|Name=mRNA_Ecto-sp13_S_contig11903.1624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=322bp
LVLCVSAGSTCRPGGPEQVGEEVTSSKEELLATLIRPTVLKIYFPPSLDQ
VPFCFCEDDVLVPATEAANGRLRPLSCNSVRAAVTTVLQCVKREAGSASV
LSSGDKGAEGEGGAARARSAAEAVLAAIKEDPLGADLILALLSMAVSSYR
RDTVSTPFPKQLEPPGGSKRAYASFISCLEGIPSMLEMSRWTDAAQVLKL
PPVAVVALHFVLVLQPARLRNSASKNPARSAGTASCGARAPSSCFASSGA
GVAGFKARFPAAGFGDPSTASGGSGAERGGDGGDGGGGGDGGGASTQLGD
VPTYAFEAVLPSDPAFDAQVRL
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mRNA from alignment at Ecto-sp13_S_contig11903:373..3316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11903.1624.1 ID=mRNA_Ecto-sp13_S_contig11903.1624.1|Name=mRNA_Ecto-sp13_S_contig11903.1624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2944bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11903:373..3316- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGTTGTGTGTATCAGCTGGTTCGACCTGCAGGCCGGGAGGACCTGA
ACAAGTGGGCGAAGAGGTCACCTCGAGCAAGGAAGAGCTGCTGGCCACGC
TAATCCGGCCGACGGTGCTGAAGATCTACTTCCCTCCCAGCCTTGACCAG
GTTCCCTTCTGCTTCTGCGAGGTGAGTGTGGTGGTTTTCGCGTTTCGCTG
CGGAGCTCCTACCTCCAACTACATTCCATTATCCGACCGCACGTGTTTCT
GGATCACCGCAGGAGAGATGCTGTTGGTGTATAACATTGGTCTGGCGATT
ATCCGGACCACTGCGACAGTACAAGAAAGAGATGGGAAAACGCCTATTCG
GTTTGAAACATATCTGTGTCTGTCGACGCGGGATTTTTCTTTTTTTGGGG
CCCTTCTCACTTGGTTTCATCTCGGGCAGCATTCAGCCGACAAGCTCGAA
GCCACCACGTGTGCGCACTCCCGCGAACTCTCGTCTCTTTCGTCGGCACC
TTAGTGCACCTGCGACAAGCTTTGTTTACCCCCCTTGTGAAACAACGCCC
GTGCTCAGGAATAAAATCTCAAGCGCACGAGTGACGAAACCAACACACTT
TACTCCATCCCTCCCAGACCCAACCAACCTATTGTATCATATAACGTCGC
CAATACCGAAGGCCCGATACACATTTTTGAAGTCCCGCATGGACCCTGCA
GGGTCTCCAACCACAACGTATCATACGATGCCATCAGTGCTGAAGACCAA
CAGCACGCACCATCCCCACTTGTGCAATACCTGTGTTTGTCAGGATGATG
TCCTGGTGCCCGCGACGGAGGCTGCCAACGGGCGCCTCCGCCCGCTCTCG
TGCAACTCCGTCCGTGCGGCAGTCACCACGGTCCTTCAGTGCGTGAAGCG
GGAGGCGGGATCAGCATCTGTCCTAAGCTCGGGCGACAAGGGCGCAGAAG
GAGAAGGAGGAGGTACGCGTACACGAACGCTTTACATGCAGGCAAGTAAC
GTTACTGTGTATTGGTTCTTTGTGTCTTGTCGGCGATCAGACGCAACAGC
TCAACAAAATGGTGGAATGACCAGGTTCCCCCGCCACCCCAGGGAGCACC
CCATCCCAACCCCAACCAACAGACAGTATCACAAGAATGTATTGAGATCT
TTCACAACCGAAAGATCAACGATCTCCGTGGCAAGTAGAAAGCTGACACT
GCTGTATCGTATTCCCGGCCTCACTACCGACCCGCAGGAGCGGCGCGAGC
TCGGTCGGCCGCTGAGGCAGTGCTAGCGGCGATAAAGGAGGACCCTCTCG
GTGCGGACCTCATTCTCGCGCTCCTGAGCATGGCAGTCTCTTCCTACAGG
TGCACCGAAAAATAAATAAAAGGATGTCTGTGAATAGATAGCTGGTTGGG
TGTTTCCCGCTGAAAGAGAGGCGTTGTCGTGATGCCATCTTGGCTGCCTG
TGGGCAACTAGCAACACACACGACTCTGTCATCCTTGGTGTATATAGTAT
TTCTTCAGCCCCGGTGTTGAGCGTGATTCAGCTCTTGACTCCGGTGTACC
TCGATTGATTGAGCGTGGGAATTGTAGCTCCGGTGTGCTTCCTCCTTGCC
GCCCCTCCTCCCCTCCCCTTCCCCGGGATGCCCAACTCACGACGTGGTTG
GTTTAGCACAGAAGACGCAAGAATGATGACCAGCTCCTGATTCATCCTTG
TGAAACACATCTAGCCTGGGCCGTCTAAAATCCGGCATATCGCTCCGTCC
CGGTATTGTAGGGATTCGAGGTCAACAGTCTAACGACAACGGCATGCGTT
TTCATGAGTATGCCCCCCCCCATCCCCCCTTCGGTATTTTCCGGGCCAGA
CGAGACACGGTGTCGACGCCGTTCCCAAAACAGTTGGAGCCACCGGGTGG
CTCGAAACGCGCGTACGCTTCCTTCATTTCGTGCTTGGAGGGCATCCCCA
GCATGCTGGAGGTGGGCCCTAGTCCTTGCCGTGTCATGAAGATGAAGATA
CCCTCGTCGTTGACAGCATCAGCAAGGGAATTGTTCAACTACTGGTGCTT
TTGATGGTGCTCGTACCCCCCTCCGGGGTGGAGACAGGTGTAACCTAGGG
GGAAGGTGTAACCTAGGGGAGAAGACAGGTGTAAACTAGGGGAGAAAACA
GAAAGATGGCAACATGACCCTTCTGATTTTCTGGTGCACATAGCGTTATT
ATACCTCGGTTTCTTGTGCCCACTGTATCGCTTTTTAAAAAAAAACATTC
TTGTGCATGAGCGCTGACGTTCGTCGACCAATGAGCCATGCTGGCGACGG
AGATCTGGCGAGGCATCTACTGCCCTCACCGGCGATTTTGTTCCAGTTCG
CCCGCAAGGTAGAAGCAATGACCAACCCTCCCCTGATATCGCCTCACAGA
CCTGGACCTCCCCCACCTCCACCCCCACCCCTGCGACGCCCGCCTTCACT
CTTTGTCTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTATCTCTCT
CTCTGTGTGTCTCCGTCTTTCCCGTATGTTAACGCACAGATGTCCAGGTG
GACGGACGCAGCACAGGTGTTGAAACTTCCCCCGGTAGCCGTCGTCGCCC
TCCACTTCGTGCTGGTGCTTCAGCCGGCGAGACTGCGCAACAGCGCATCG
AAAAATCCCGCTCGGTCTGCGGGGACAGCGAGCTGCGGCGCCAGGGCCCC
GTCGAGTTGTTTCGCGTCCTCCGGCGCGGGAGTCGCCGGATTTAAAGCGC
GCTTTCCCGCCGCTGGTTTTGGGGATCCGTCGACTGCAAGCGGTGGGAGT
GGTGCCGAACGGGGTGGGGATGGTGGGGACGGTGGTGGTGGTGGTGATGG
TGGTGGTGCGTCTACCCAGCTTGGCGACGTGCCGACGTACGCCTTTGAGG
CGGTGCTGCCCAGCGATCCCGCTTTCGACGCCCAGGTTCGTCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11903:373..3316-

>mRNA_Ecto-sp13_S_contig11903.1624.1 ID=mRNA_Ecto-sp13_S_contig11903.1624.1|Name=mRNA_Ecto-sp13_S_contig11903.1624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=966bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11903:373..3316- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGTGTTGTGTGTATCAGCTGGTTCGACCTGCAGGCCGGGAGGACCTGA
ACAAGTGGGCGAAGAGGTCACCTCGAGCAAGGAAGAGCTGCTGGCCACGC
TAATCCGGCCGACGGTGCTGAAGATCTACTTCCCTCCCAGCCTTGACCAG
GTTCCCTTCTGCTTCTGCGAGGATGATGTCCTGGTGCCCGCGACGGAGGC
TGCCAACGGGCGCCTCCGCCCGCTCTCGTGCAACTCCGTCCGTGCGGCAG
TCACCACGGTCCTTCAGTGCGTGAAGCGGGAGGCGGGATCAGCATCTGTC
CTAAGCTCGGGCGACAAGGGCGCAGAAGGAGAAGGAGGAGCGGCGCGAGC
TCGGTCGGCCGCTGAGGCAGTGCTAGCGGCGATAAAGGAGGACCCTCTCG
GTGCGGACCTCATTCTCGCGCTCCTGAGCATGGCAGTCTCTTCCTACAGA
CGAGACACGGTGTCGACGCCGTTCCCAAAACAGTTGGAGCCACCGGGTGG
CTCGAAACGCGCGTACGCTTCCTTCATTTCGTGCTTGGAGGGCATCCCCA
GCATGCTGGAGATGTCCAGGTGGACGGACGCAGCACAGGTGTTGAAACTT
CCCCCGGTAGCCGTCGTCGCCCTCCACTTCGTGCTGGTGCTTCAGCCGGC
GAGACTGCGCAACAGCGCATCGAAAAATCCCGCTCGGTCTGCGGGGACAG
CGAGCTGCGGCGCCAGGGCCCCGTCGAGTTGTTTCGCGTCCTCCGGCGCG
GGAGTCGCCGGATTTAAAGCGCGCTTTCCCGCCGCTGGTTTTGGGGATCC
GTCGACTGCAAGCGGTGGGAGTGGTGCCGAACGGGGTGGGGATGGTGGGG
ACGGTGGTGGTGGTGGTGATGGTGGTGGTGCGTCTACCCAGCTTGGCGAC
GTGCCGACGTACGCCTTTGAGGCGGTGCTGCCCAGCGATCCCGCTTTCGA
CGCCCAGGTTCGTCTG
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