mRNA_Ecto-sp13_S_contig5784.16221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5784.16221.1
Unique NamemRNA_Ecto-sp13_S_contig5784.16221.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5784.16221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5784contigEcto-sp13_S_contig5784:5708..6010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size303
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.8020089-UTR-Ecto-sp13_S_contig5784:5707..58281681463801.8020089-UTR-Ecto-sp13_S_contig5784:5707..5828Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5784 5708..5828 -
1681463801.8241174-UTR-Ecto-sp13_S_contig5784:5966..60101681463801.8241174-UTR-Ecto-sp13_S_contig5784:5966..6010Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5784 5967..6010 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.8134825-CDS-Ecto-sp13_S_contig5784:5828..59661681463801.8134825-CDS-Ecto-sp13_S_contig5784:5828..5966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5784 5829..5966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5784.16221.1prot_Ecto-sp13_S_contig5784.16221.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5784 5829..5966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5784.16221.1

>prot_Ecto-sp13_S_contig5784.16221.1 ID=prot_Ecto-sp13_S_contig5784.16221.1|Name=mRNA_Ecto-sp13_S_contig5784.16221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MLRAVSRAQRGRDRGAVSLRRWRRNRLRYTQKRKDRFLGAAAVCC*
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mRNA from alignment at Ecto-sp13_S_contig5784:5708..6010-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5784.16221.1 ID=mRNA_Ecto-sp13_S_contig5784.16221.1|Name=mRNA_Ecto-sp13_S_contig5784.16221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5784:5708..6010- (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCTCTGGTTCTTTCGCGAGGAGGGAGACCAAGGCACACAAGATGCTG
CGCGCCGTGTCTCGCGCCCAGCGCGGCCGCGACCGTGGCGCAGTGAGCTT
GAGAAGGTGGCGGCGCAACCGGCTGCGGTACACACAAAAAAGGAAAGACC
GGTTTTTAGGTGCTGCTGCTGTGTGCTGCTGAGTGGTCTGTTCTAGAAAC
CTCAAGGCTGCCAATCCAGTGCTACCCTTTCGCGTCCAGAGAGACCGAGG
CACAAAAGGTGCTGCCCGCCGCGTCTCGCGCCCACCGCGGCCACGGTAAT
GGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5784:5708..6010-

>mRNA_Ecto-sp13_S_contig5784.16221.1 ID=mRNA_Ecto-sp13_S_contig5784.16221.1|Name=mRNA_Ecto-sp13_S_contig5784.16221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5784:5708..6010- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCGCGCCGTGTCTCGCGCCCAGCGCGGCCGCGACCGTGGCGCAGT
GAGCTTGAGAAGGTGGCGGCGCAACCGGCTGCGGTACACACAAAAAAGGA
AAGACCGGTTTTTAGGTGCTGCTGCTGTGTGCTGCTGA
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