prot_Ecto-sp13_S_contig57791.16209.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig57791.16209.1
Unique Nameprot_Ecto-sp13_S_contig57791.16209.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length108
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57791.16209.1 vs. uniprot
Match: A0A6H5KW49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW49_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.600e-70
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0 
Query:    1 HRAILENVPDAAFHVTYLGQLLGLYLAYRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 107
            HRA+LENVPDAAFHVTYLGQLLGLYLA+RVA GSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA
Sbjct:   86 HRAVLENVPDAAFHVTYLGQLLGLYLAHRVARGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 192
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BLAST of mRNA_Ecto-sp13_S_contig57791.16209.1 vs. uniprot
Match: D8LI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI82_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 2.670e-70
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 0 
Query:    1 HRAILENVPDAAFHVTYLGQLLGLYLAYRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 107
            HRA+LENVPDAAFHVTYLGQLLGLYLA+RVAGGSGWHILPGVMLSWTSLFSWLAVFRHF VTNPLFYWLPLGPAVALAAAVYLFTSQK+LEREV+ELEGSRYNLKGA
Sbjct:   12 HRAVLENVPDAAFHVTYLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFEVTNPLFYWLPLGPAVALAAAVYLFTSQKKLEREVEELEGSRYNLKGA 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57791.16209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW49_9PHAE2.600e-7097.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI82_ECTSI2.670e-7095.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..85
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 60..64
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 32..37
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..59
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..31
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 86..107
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 66..85
NoneNo IPR availableTMHMMTMhelixcoord: 10..27
NoneNo IPR availableTMHMMTMhelixcoord: 34..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57791contigEcto-sp13_S_contig57791:2..787 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57791.16209.1mRNA_Ecto-sp13_S_contig57791.16209.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig57791 2..787 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig57791.16209.1 ID=prot_Ecto-sp13_S_contig57791.16209.1|Name=mRNA_Ecto-sp13_S_contig57791.16209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
HRAILENVPDAAFHVTYLGQLLGLYLAYRVAGGSGWHILPGVMLSWTSLF
SWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGS
RYNLKGA*
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