mRNA_Ecto-sp13_S_contig57791.16209.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57791.16209.1
Unique NamemRNA_Ecto-sp13_S_contig57791.16209.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57791.16209.1 vs. uniprot
Match: A0A6H5KW49_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW49_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.600e-70
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 HRAILENVPDAAFHVTYLGQLLGLYLAYRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 321
            HRA+LENVPDAAFHVTYLGQLLGLYLA+RVA GSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA
Sbjct:   86 HRAVLENVPDAAFHVTYLGQLLGLYLAHRVARGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 192
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BLAST of mRNA_Ecto-sp13_S_contig57791.16209.1 vs. uniprot
Match: D8LI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI82_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 2.670e-70
Identity = 102/107 (95.33%), Postives = 106/107 (99.07%), Query Frame = 1 
Query:    1 HRAILENVPDAAFHVTYLGQLLGLYLAYRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGSRYNLKGA 321
            HRA+LENVPDAAFHVTYLGQLLGLYLA+RVAGGSGWHILPGVMLSWTSLFSWLAVFRHF VTNPLFYWLPLGPAVALAAAVYLFTSQK+LEREV+ELEGSRYNLKGA
Sbjct:   12 HRAVLENVPDAAFHVTYLGQLLGLYLAHRVAGGSGWHILPGVMLSWTSLFSWLAVFRHFEVTNPLFYWLPLGPAVALAAAVYLFTSQKKLEREVEELEGSRYNLKGA 118
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57791.16209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW49_9PHAE2.600e-7097.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI82_ECTSI2.670e-7095.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57791contigEcto-sp13_S_contig57791:2..787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463801.056414-CDS-Ecto-sp13_S_contig57791:1..971681463801.056414-CDS-Ecto-sp13_S_contig57791:1..97Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57791 2..97 +
1681463801.0683928-CDS-Ecto-sp13_S_contig57791:559..7871681463801.0683928-CDS-Ecto-sp13_S_contig57791:559..787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57791 560..787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57791.16209.1prot_Ecto-sp13_S_contig57791.16209.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57791 2..787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57791.16209.1

>prot_Ecto-sp13_S_contig57791.16209.1 ID=prot_Ecto-sp13_S_contig57791.16209.1|Name=mRNA_Ecto-sp13_S_contig57791.16209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
HRAILENVPDAAFHVTYLGQLLGLYLAYRVAGGSGWHILPGVMLSWTSLF
SWLAVFRHFGVTNPLFYWLPLGPAVALAAAVYLFTSQKRLEREVKELEGS
RYNLKGA*
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mRNA from alignment at Ecto-sp13_S_contig57791:2..787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57791.16209.1 ID=mRNA_Ecto-sp13_S_contig57791.16209.1|Name=mRNA_Ecto-sp13_S_contig57791.16209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57791:2..787+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGAGCTATTCTTGAGAACGTCCCGGATGCGGCGTTCCATGTCACGTA
CCTCGGACAGCTGCTGGGCTTGTACCTGGCGTACAGGGTGGCTGGGGTGA
GTGAAAACGAACGTGCTTCCGAGAGAGTAAAGAAAGTACTACTGCTGTAC
TAAGACTCGAGCGCAGGTGGCACAAGAACATGGAGCAGCAGCGACTATTT
GATTCAGGATGACGCGGTCGAGCAACCGCGGGACTGCTCGTGCCTTACTC
TAAGGAGTACGGTCTTGAACAAGCCGGAGAACATGTCAGTTGTATGACTG
GCTAGATACAACGGTAGGATTCACCCTCACTCGCGTTGAACTCCGTAGCT
CCTCGGGATTGACACAGCCAAAACAAAAGAGCCCCAGTTCTTTACATCTA
GATATATATTTTACGCGGGACACACGTGTTATTCTACAGAAGTTCAAGTA
TCGTCCCAATCAATGCCTCGCAGTCGCAACGCGCAAGCCCACAACTCGGA
TATCGCTTGTGTTCCGTGCGTTTAATTCCTTCGCGTGTGTTCATCCGCAA
TGCATCAGGGGAGCGGTTGGCATATTTTACCGGGGGTCATGTTGTCATGG
ACGAGCCTCTTCTCGTGGCTTGCGGTGTTCCGACACTTCGGAGTGACCAA
CCCGCTTTTCTATTGGCTGCCGCTCGGTCCGGCGGTTGCGCTTGCGGCCG
CCGTCTACCTCTTCACCTCTCAGAAAAGGTTGGAAAGAGAGGTAAAGGAA
CTGGAAGGGTCGCGGTACAACCTCAAAGGAGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57791:2..787+

>mRNA_Ecto-sp13_S_contig57791.16209.1 ID=mRNA_Ecto-sp13_S_contig57791.16209.1|Name=mRNA_Ecto-sp13_S_contig57791.16209.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57791:2..787+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCGAGCTATTCTTGAGAACGTCCCGGATGCGGCGTTCCATGTCACGTA
CCTCGGACAGCTGCTGGGCTTGTACCTGGCGTACAGGGTGGCTGGGGGGA
GCGGTTGGCATATTTTACCGGGGGTCATGTTGTCATGGACGAGCCTCTTC
TCGTGGCTTGCGGTGTTCCGACACTTCGGAGTGACCAACCCGCTTTTCTA
TTGGCTGCCGCTCGGTCCGGCGGTTGCGCTTGCGGCCGCCGTCTACCTCT
TCACCTCTCAGAAAAGGTTGGAAAGAGAGGTAAAGGAACTGGAAGGGTCG
CGGTACAACCTCAAAGGAGCTTGA
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