prot_Ecto-sp13_S_contig5777.16205.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5777.16205.1
Unique Nameprot_Ecto-sp13_S_contig5777.16205.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length197
Homology
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: D8LBZ3_ECTSI (Fungal-optimized enhanced green fluorescent protein/peroxisomal membrane protein A fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ3_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 2.410e-110
Identity = 176/206 (85.44%), Postives = 184/206 (89.32%), Query Frame = 0
Query:    1 MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQQLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSG-GGRFTESS--------TYGGVEKGER 197
            MV+SRQLLSLALALCSCHASSAFAGVVT RGGG+ SPAATPPRAIDGVEQQLGVVRRARGG LLRRRGVAVPAPD GGLVVESG+KNGGDGLLASYLRALDTKP+ITKV+TSGVICGIGDIMAQALAFKTAATESF+LGSFLAALEFKRLAIYGETCL VLPRMGIFSR+FSFCLG  G GG              TYGGVEKG+R
Sbjct:    1 MVNSRQLLSLALALCSCHASSAFAGVVTTRGGGVPSPAATPPRAIDGVEQQLGVVRRARGGVLLRRRGVAVPAPDNGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGETCLHVLPRMGIFSRVFSFCLGPRGWGGGLVHRQQYLRWCRETYGGVEKGKR 206          
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.970e-99
Identity = 169/195 (86.67%), Postives = 171/195 (87.69%), Query Frame = 0
Query:    1 MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQQLG-----------VVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKV---ITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGGG 181
            MV+ RQLLSL LALCSCHA SAFAGVVT RGGG+ SPAATPPRAID VEQQLG           VVRRARGGALLRRRGVAVPAPDQ GLVVESGDKNG DGLLASYLRALDTKPLITKV    TSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSG G
Sbjct:    1 MVNCRQLLSLVLALCSCHACSAFAGVVTTRGGGVPSPAATPPRAIDSVEQQLGEESLSRWNETCVVRRARGGALLRRRGVAVPAPDQSGLVVESGDKNGADGLLASYLRALDTKPLITKVYQVFTSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGRG 195          
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 6.740e-89
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 0
Query:    1 MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQQLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYG 154
            MV+SRQLLSLALALCSCHASSAFAGVVT RGGG+ SPAATPPRAIDGVEQQLGVVRRARGG LLRRRGVAVPAPD GGLVVESG+KNGGDGLLASYLRALDTKP+ITKV+TSGVICGIGDIMAQALAFKTAATESF+LGSFLAALEFKRLAIYG
Sbjct:    1 MVNSRQLLSLALALCSCHASSAFAGVVTTRGGGVPSPAATPPRAIDGVEQQLGVVRRARGGVLLRRRGVAVPAPDNGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYG 154          
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.180e-15
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 0
Query:   91 GLLASYLRALDTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYG 154
            G+L  YLR LD +PL TK+ITSGVIC IGD++AQAL+F  +A    +L SF  ALEFKRLAIYG
Sbjct:   17 GVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRSFANALEFKRLAIYG 80          
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: W7TJ04_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ04_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.570e-7
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 0
Query:   34 LTSPAATPPRAIDGVEQQLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQAL 126
            + SP+A+PP         L  +R    G  +RRRG        G     S     G GLL  YL ALDT+P++TK ++SG+IC +GD+++Q L
Sbjct:   61 IASPSASPPY----FSTSLPSLRSRAVGRAVRRRG--------GAFASSSEPSEQGRGLLEGYLNALDTRPILTKSLSSGIICALGDVLSQYL 141          
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: A0A4D9CLF4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLF4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.820e-6
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0
Query:   61 GALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQ 124
            G  LRRRG        G     S     G GLL  YL ALDT+P++TK ++SG+IC +GD+++Q
Sbjct:   84 GRALRRRG--------GAFASSSEPSEQGRGLLEGYLNALDTRPILTKSLSSGIICALGDVLSQ 139          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBZ3_ECTSI2.410e-11085.44Fungal-optimized enhanced green fluorescent protei... [more]
A0A6H5K3K4_9PHAE1.970e-9986.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6L5_ECTSI6.740e-8993.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D6PWV8_9PHAE2.180e-1564.06PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus ... [more]
W7TJ04_9STRA1.570e-737.63Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9CLF4_9STRA4.820e-643.75Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..197
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: 5.0
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.729
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5777contigEcto-sp13_S_contig5777:5231..8079 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5777.16205.1mRNA_Ecto-sp13_S_contig5777.16205.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5777 5231..8079 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5777.16205.1 ID=prot_Ecto-sp13_S_contig5777.16205.1|Name=mRNA_Ecto-sp13_S_contig5777.16205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQ
QLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRAL
DTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRL
AIYGETCLRVLPRMGIFSRLFSFCLGSSGGGRFTESSTYGGVEKGER
back to top