mRNA_Ecto-sp13_S_contig5777.16205.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5777.16205.1
Unique NamemRNA_Ecto-sp13_S_contig5777.16205.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: D8LBZ3_ECTSI (Fungal-optimized enhanced green fluorescent protein/peroxisomal membrane protein A fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBZ3_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 2.410e-110
Identity = 176/206 (85.44%), Postives = 184/206 (89.32%), Query Frame = 1 
Query:    1 MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQQLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSG-GGRFTESS--------TYGGVEKGER 591
            MV+SRQLLSLALALCSCHASSAFAGVVT RGGG+ SPAATPPRAIDGVEQQLGVVRRARGG LLRRRGVAVPAPD GGLVVESG+KNGGDGLLASYLRALDTKP+ITKV+TSGVICGIGDIMAQALAFKTAATESF+LGSFLAALEFKRLAIYGETCL VLPRMGIFSR+FSFCLG  G GG              TYGGVEKG+R
Sbjct:    1 MVNSRQLLSLALALCSCHASSAFAGVVTTRGGGVPSPAATPPRAIDGVEQQLGVVRRARGGVLLRRRGVAVPAPDNGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYGETCLHVLPRMGIFSRVFSFCLGPRGWGGGLVHRQQYLRWCRETYGGVEKGKR 206
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BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: A0A6H5K3K4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K4_9PHAE)

HSP 1 Score: 302 bits (774), Expect = 1.970e-99
Identity = 169/195 (86.67%), Postives = 171/195 (87.69%), Query Frame = 1 
Query:    1 MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQQLG-----------VVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKV---ITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGGG 543
            MV+ RQLLSL LALCSCHA SAFAGVVT RGGG+ SPAATPPRAID VEQQLG           VVRRARGGALLRRRGVAVPAPDQ GLVVESGDKNG DGLLASYLRALDTKPLITKV    TSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSG G
Sbjct:    1 MVNCRQLLSLVLALCSCHACSAFAGVVTTRGGGVPSPAATPPRAIDSVEQQLGEESLSRWNETCVVRRARGGALLRRRGVAVPAPDQSGLVVESGDKNGADGLLASYLRALDTKPLITKVYQVFTSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYGETCLRVLPRMGIFSRLFSFCLGSSGRG 195
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BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: D7G6L5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6L5_ECTSI)

HSP 1 Score: 271 bits (694), Expect = 6.740e-89
Identity = 144/154 (93.51%), Postives = 150/154 (97.40%), Query Frame = 1 
Query:    1 MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQQLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYG 462
            MV+SRQLLSLALALCSCHASSAFAGVVT RGGG+ SPAATPPRAIDGVEQQLGVVRRARGG LLRRRGVAVPAPD GGLVVESG+KNGGDGLLASYLRALDTKP+ITKV+TSGVICGIGDIMAQALAFKTAATESF+LGSFLAALEFKRLAIYG
Sbjct:    1 MVNSRQLLSLALALCSCHASSAFAGVVTTRGGGVPSPAATPPRAIDGVEQQLGVVRRARGGVLLRRRGVAVPAPDNGGLVVESGNKNGGDGLLASYLRALDTKPIITKVVTSGVICGIGDIMAQALAFKTAATESFTLGSFLAALEFKRLAIYG 154
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BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: D6PWV8_9PHAE (PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus TaxID=3011 RepID=D6PWV8_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.180e-15
Identity = 41/64 (64.06%), Postives = 49/64 (76.56%), Query Frame = 1 
Query:  271 GLLASYLRALDTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRLAIYG 462
            G+L  YLR LD +PL TK+ITSGVIC IGD++AQAL+F  +A    +L SF  ALEFKRLAIYG
Sbjct:   17 GVLNKYLRVLDRRPLETKMITSGVICAIGDVVAQALSFSNSAVTPNNLRSFANALEFKRLAIYG 80
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BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: W7TJ04_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ04_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.570e-7
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1 
Query:  100 LTSPAATPPRAIDGVEQQLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQAL 378
            + SP+A+PP         L  +R    G  +RRRG        G     S     G GLL  YL ALDT+P++TK ++SG+IC +GD+++Q L
Sbjct:   61 IASPSASPPY----FSTSLPSLRSRAVGRAVRRRG--------GAFASSSEPSEQGRGLLEGYLNALDTRPILTKSLSSGIICALGDVLSQYL 141
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BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Match: A0A4D9CLF4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLF4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 4.820e-6
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:  181 GALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRALDTKPLITKVITSGVICGIGDIMAQ 372
            G  LRRRG        G     S     G GLL  YL ALDT+P++TK ++SG+IC +GD+++Q
Sbjct:   84 GRALRRRG--------GAFASSSEPSEQGRGLLEGYLNALDTRPILTKSLSSGIICALGDVLSQ 139
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5777.16205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LBZ3_ECTSI2.410e-11085.44Fungal-optimized enhanced green fluorescent protei... [more]
A0A6H5K3K4_9PHAE1.970e-9986.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6L5_ECTSI6.740e-8993.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D6PWV8_9PHAE2.180e-1564.06PXMP2/4 family protein 2 (Fragment) n=5 Tax=Fucus ... [more]
W7TJ04_9STRA1.570e-737.63Uncharacterized protein (Fragment) n=1 Tax=Nannoch... [more]
A0A4D9CLF4_9STRA4.820e-643.75Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5777contigEcto-sp13_S_contig5777:5231..8079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score271.6
Seed ortholog evalue3e-70
Seed eggNOG ortholog2880.D7G6L5
Model size591
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons3
EggNOG free text desc.Belongs to the peroxisomal membrane protein PXMP2 4 family
EggNOG OGsKOG1944@1,KOG1944@2759
Ec32 ortholog descriptionMpv17/PMP22
Ec32 orthologEc-00_009890.1
Cds size591
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463800.8235228-CDS-Ecto-sp13_S_contig5777:5230..53871681463800.8235228-CDS-Ecto-sp13_S_contig5777:5230..5387Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5777 5231..5387 +
1681463800.8647087-CDS-Ecto-sp13_S_contig5777:7180..73471681463800.8647087-CDS-Ecto-sp13_S_contig5777:7180..7347Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5777 7181..7347 +
1681463800.87435-CDS-Ecto-sp13_S_contig5777:7812..80791681463800.87435-CDS-Ecto-sp13_S_contig5777:7812..8079Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5777 7813..8079 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5777.16205.1prot_Ecto-sp13_S_contig5777.16205.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5777 5231..8079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5777.16205.1

>prot_Ecto-sp13_S_contig5777.16205.1 ID=prot_Ecto-sp13_S_contig5777.16205.1|Name=mRNA_Ecto-sp13_S_contig5777.16205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MVSSRQLLSLALALCSCHASSAFAGVVTLRGGGLTSPAATPPRAIDGVEQ
QLGVVRRARGGALLRRRGVAVPAPDQGGLVVESGDKNGGDGLLASYLRAL
DTKPLITKVITSGVICGIGDIMAQALAFKTAATESFSLGSFLAALEFKRL
AIYGETCLRVLPRMGIFSRLFSFCLGSSGGGRFTESSTYGGVEKGER
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mRNA from alignment at Ecto-sp13_S_contig5777:5231..8079+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5777.16205.1 ID=mRNA_Ecto-sp13_S_contig5777.16205.1|Name=mRNA_Ecto-sp13_S_contig5777.16205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5777:5231..8079+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGCTCTCGCCAGCTTCTTTCGCTCGCACTAGCGCTGTGCTCGTG
CCATGCCTCTTCGGCGTTTGCTGGCGTCGTGACCTTGCGCGGAGGAGGAT
TGACTAGCCCAGCAGCCACGCCGCCACGGGCTATCGATGGCGTGGAGCAA
CAGCTTGGTGAGGAATCGCTCTCTCGATCAGGCTGCTTCCGTAGCCCAAT
GCGTAGCCATAGTAAATGAACGAGGGCGAACCCACCTTTGTTGTGTCACA
GAAGAAGAGGACGGTTGATGACGTGTGCTTCGTCACACACGTACACATAC
ACGCGCTACAATAACTCGCTGGACTGACGCTGTAGTACTGGGTCGCTCTC
TCGCGAAGGTGTGCGTCGAAACCATCGTCAGCCCTTTATTCGATCCCTTT
TTCTCTTGCCTGCTTCTGCAAATGCTATCTGACATACCTCGAGATCACTG
CTGGTGTCCCACAAATTGTACGGATAGTCTACAGCAGTAGTCTAGACTTT
ACGTGCTTCTGATGACATCATCACATCCCGCTGACCCACGACGTCTCACA
CACCGCTCCCAAGCATCCAAACAACCAAGATCCCTACGCGAGTTTTGGAA
TGCCACAGCAGCATCTTCACGCTGGGATTCTTTGTGAAGCGAGGGGCGTG
GTAGAGCTTAGGTGGACTGAGACGTGTACGTACTTCAAGTTGGTTCCGAT
GAAAAAGTTGGGGGGCGACCACGAGGGTTACGTGTCTCGACGTCCTTAAA
GCATTGTAGTAGCAGCGGTAAGTGAGCGTCATCGTTCGCATGGAGTTGTT
CAACCGCGGCATCCGCCTCGGTTATGTTACGGGTGGTGGGCTATGCAGAA
AGAGGCAAGCAAATATACATCCTTGGACATGGAAACGGCGAAGAATTCTA
ACTGGGGCTAAAAATAAGAGGCTCGACTCTAGAGCACTTGCTCGAGATAA
GAGTGTTCCTCAGCGTAGTGTGACGTGTGTGTGAATGAGGTTTTAGTGGC
ATCTGCTGGACACTGGGGTACTGCTGTATTTAGATTCGTCTGTTTCCTCA
ACTCTGAGAAACCAGTGAAACAAACGGGACAAAAAGACGCATGTAGGCAG
ATGGGAGATTATCTCTGCAGATCTTGGGTCTTCCGCCCCAAAAGTCTCTG
TCAAGAATGCCGAACTAAATAGACCTCGAGGGTACCGTTCTCTCGAACGG
ATAGCCTCAACTATCAGTGATGGGATGGATATGTTCTTGTAAGAAACCTT
CCTCCGTTGTGTCTTTTGCTGCTATACATGTTCCTCCATGAAGGTGCTCC
ACGGTTGCCGGTGGACATGTTGCCGCCATTTTTTTCTGTGGCGTCAAGAG
AAAAATTGTGTTCCTCGGCTAGTGCTCTCCCGTAGTACCAGTACGTGATC
CGACGTGACGGCCGCCGCTGCTGCTTGCGTGTGTATACAAGTATGTGGCG
TGGAGAAACAAGAGATTTTTTTTTGTGTCTTGCTGGCAAGGCTGGACTCG
AGAAAGGGACAAGAACAGAACATCCGTAGCGCTTGACGTGCACTGCACTC
TTGCAGTCGAGACATCACGCAGTATGATGCCGACGAGGCCCCCAGAGAGT
TTTACATCCTACCAACCGCATGGAGCATACTGTATGCTTGAGCATTTTTT
CCATTCTTTGTTTTGGCGCCGTTTCTTGCGAGTGTAGGCCTTCACCTCTC
TGTATTGTCCCTGTAGTTGAAAAGCTCTAACTGCTACTGTATGATTGACG
ATCGATCTACAACTCCATTCAGCGAAGGGGGGGTATTTAGTGCCGGTTTG
AGCCTAGAGAATTGACAGGCTCTATTCCGGACACCGGCATTATGCAAGGT
ACAAGATGATTCACTCTGTGCGTATCGGCACTATGTATACCGGACGCCGG
AAGTTTTCAACCGACACTAACCCCCCCGCACTGTCGTAAAACCTTATCAG
GTGTCGTAAGACGAGCTCGCGGCGGGGCCCTCCTGCGTAGACGCGGGGTA
GCGGTGCCCGCCCCCGACCAAGGCGGCCTCGTGGTGGAATCGGGCGACAA
GAACGGTGGCGATGGTCTCCTCGCCTCCTACCTCCGCGCCCTAGACACCA
AACCCCTCATCACCAAGGTTCGCAGATCGCAAACGGCATATATAAATACC
ACGTACAACGGCAGGCCGTGCTCCCAGGGGAAGCTGTTTACACGTGTCTT
TTTTTTTAGTTGAGGTGTGACAAATCGGCTTCCAGGCGGAGACTTATGCA
AGTCTATCAGGTGTATCGCCCCTCACCAGCATCTCGATGTGACGTAGACA
GAGTGCGCCCTCAGATCGCACACTCGAAAGGGCGGATGGCCTTTCTTAAG
CCCGCTTTCCGGGAAATGCACGTGAAGAGAAAGAAGGTTTGGCTGCAATT
CAGCCTGACGAGTGATGAGAAAACTTCTTGCGAGGTAGCACATGGGTGCG
AAAAGAGAGCATCCTGGAGCGTGTGCGGCACAGCAGTGTCATGGATTCGG
CAGGAAGCAAAGCTGACAAAGCTTCAAGTTTTTTTCCCCTTGCCTCACGG
TACACTGCTGCTGTGTTTCCCAAAAACCGAAGGTCATCACGTCCGGTGTG
ATTTGCGGCATCGGTGACATCATGGCGCAAGCGCTGGCGTTCAAGACGGC
GGCGACGGAATCGTTTTCCTTGGGCTCTTTCCTCGCCGCCCTTGAGTTCA
AGCGGTTAGCCATCTACGGTGAGACTTGCCTTCGCGTTTTGCCAAGAATG
GGTATTTTCTCCCGTTTGTTCTCGTTTTGCCTCGGCTCCTCCGGGGGGGG
TAGGTTCACTGAAAGCAGTACCTACGGTGGTGTAGAGAAAGGTGAGCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5777:5231..8079+

>mRNA_Ecto-sp13_S_contig5777.16205.1 ID=mRNA_Ecto-sp13_S_contig5777.16205.1|Name=mRNA_Ecto-sp13_S_contig5777.16205.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5777:5231..8079+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCAGCTCTCGCCAGCTTCTTTCGCTCGCACTAGCGCTGTGCTCGTG
CCATGCCTCTTCGGCGTTTGCTGGCGTCGTGACCTTGCGCGGAGGAGGAT
TGACTAGCCCAGCAGCCACGCCGCCACGGGCTATCGATGGCGTGGAGCAA
CAGCTTGGTGTCGTAAGACGAGCTCGCGGCGGGGCCCTCCTGCGTAGACG
CGGGGTAGCGGTGCCCGCCCCCGACCAAGGCGGCCTCGTGGTGGAATCGG
GCGACAAGAACGGTGGCGATGGTCTCCTCGCCTCCTACCTCCGCGCCCTA
GACACCAAACCCCTCATCACCAAGGTCATCACGTCCGGTGTGATTTGCGG
CATCGGTGACATCATGGCGCAAGCGCTGGCGTTCAAGACGGCGGCGACGG
AATCGTTTTCCTTGGGCTCTTTCCTCGCCGCCCTTGAGTTCAAGCGGTTA
GCCATCTACGGTGAGACTTGCCTTCGCGTTTTGCCAAGAATGGGTATTTT
CTCCCGTTTGTTCTCGTTTTGCCTCGGCTCCTCCGGGGGGGGTAGGTTCA
CTGAAAGCAGTACCTACGGTGGTGTAGAGAAAGGTGAGCGT
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