mRNA_Ecto-sp13_S_contig5776.16203.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5776.16203.1
Unique NamemRNA_Ecto-sp13_S_contig5776.16203.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5776.16203.1 vs. uniprot
Match: D8LK95_ECTSI (KH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK95_ECTSI)

HSP 1 Score: 551 bits (1421), Expect = 5.390e-186
Identity = 348/391 (89.00%), Postives = 359/391 (91.82%), Query Frame = 3 
Query: 1338 DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDFRAVLKQGRGKGARAQIDKVHVDIRAATPAQARMARALLQTHFKSRSELLRLEHAQRSMEGSLKAFEARQCSHEALCTREVSQGLRVQFASRPKWIGLLVGKAGSRVRGLRKSTGCSIEVIDGGXXXXXXXXXXXXXXXXXXXXXXHKATGGQPTAPSSCRVVICGPDVGSVQRAREEMELTEVRMAVNPQQAALLGRLPRTKLLDLRQQSQCMVVDL-QSDSACQERQXXXXXXXXXXXXXXXXXXXXYSSS--GAVTGVMSVRVIGPRPTVDSARVLLGVVLEYMDRERELREGDNVVRERLLAMQASFGHPGTARPAVWAGKAGRGGYGKRAPPPGTSPNSTGENRQANQRD 2501
            DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVD RAVLKQGRGKGARAQIDKVHVDIRAATPAQAR+ARALLQTHFKSRSELLRLEHA+RSMEGSL AFE           REVSQGLRVQFASRP+WIGLLVGKAGSR+RGLRKSTGCSIEVIDG XXXXXXXXXXXXXXXXXXXXXXHKA  GQP APSSCRVVICGPD GSVQRARE+MELTEVR+AVNPQQAA+LGRLPR KLLDLRQQSQCMVVDL QS SACQ RQXXXXXXXXXXXXXXXXXXXX      GAVTGVMSVRVIGPRPTVDSAR+LLGVVLEYMDRERELREGDNVVR +LL MQASFGHPGTARPA WA KAGRGGYG+RAPPPGTSPNSTGENR+ANQRD
Sbjct:   73 DVAGDIAQWAADNSRGGEFTKVLEAVRRDSGVVSVDTRAVLKQGRGKGARAQIDKVHVDIRAATPAQARVARALLQTHFKSRSELLRLEHARRSMEGSLSAFE-----------REVSQGLRVQFASRPEWIGLLVGKAGSRIRGLRKSTGCSIEVIDGXXXXXXXXXXXXXXXXXXXXXXXHKAARGQPPAPSSCRVVICGPDAGSVQRAREQMELTEVRIAVNPQQAAVLGRLPRAKLLDLRQQSQCMVVDLLQSGSACQGRQXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTGVMSVRVIGPRPTVDSARLLLGVVLEYMDRERELREGDNVVRGKLLDMQASFGHPGTARPAAWAAKAGRGGYGRRAPPPGTSPNSTGENREANQRD 452
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5776.16203.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LK95_ECTSI5.390e-18689.00KH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5776contigEcto-sp13_S_contig5776:402..4906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2720
Hectar predicted targeting categoryother localisation
Exons5
Cds size1017
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5776.16203.1prot_Ecto-sp13_S_contig5776.16203.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5776 3890..4906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463800.667616-UTR-Ecto-sp13_S_contig5776:401..7701681463800.667616-UTR-Ecto-sp13_S_contig5776:401..770Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5776 402..770 -
1681463800.6814141-UTR-Ecto-sp13_S_contig5776:1213..15431681463800.6814141-UTR-Ecto-sp13_S_contig5776:1213..1543Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5776 1214..1543 -
1681463800.6922314-UTR-Ecto-sp13_S_contig5776:1791..21331681463800.6922314-UTR-Ecto-sp13_S_contig5776:1791..2133Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5776 1792..2133 -
1681463800.7093937-UTR-Ecto-sp13_S_contig5776:2537..27211681463800.7093937-UTR-Ecto-sp13_S_contig5776:2537..2721Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5776 2538..2721 -
1681463800.721993-UTR-Ecto-sp13_S_contig5776:3411..38891681463800.721993-UTR-Ecto-sp13_S_contig5776:3411..3889Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5776 3412..3889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463800.7347791-CDS-Ecto-sp13_S_contig5776:3889..49061681463800.7347791-CDS-Ecto-sp13_S_contig5776:3889..4906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5776 3890..4906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5776.16203.1

>prot_Ecto-sp13_S_contig5776.16203.1 ID=prot_Ecto-sp13_S_contig5776.16203.1|Name=mRNA_Ecto-sp13_S_contig5776.16203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=339bp
MTDHAASSARQGKVHTTQPGRSGYKVRRHRASNKRDGCNGNNPQQNGPGS
ASGRGGSKTKKTGKLGYAAPISSVPPPSSGALSSSSLKQRPSFSVIISGD
ESGGSAGTDPPAAGRDMVTAGHRSSHHVKSDVKTLVTGSTATSSCADRIT
HAAVHNTTTPDSRASLDPCDGLKRGDMRLLSRPTALSTANRRMPAEIPSY
GRRRQRRMDPSNISSSSFRNSRKINSDSRKNMAQRIKHQRIIISRSSTCR
NSRRSPSMKHKQLVLRRRASRLIPPIISEAKKRELNPPAPRRDSSFTSFH
QQRQRTTRNGPRFLRKTRAAEKTATPGSTPSIPCAPRY*
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mRNA from alignment at Ecto-sp13_S_contig5776:402..4906-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5776.16203.1 ID=mRNA_Ecto-sp13_S_contig5776.16203.1|Name=mRNA_Ecto-sp13_S_contig5776.16203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5776:402..4906- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGATCATGCAGCCTCGTCCGCTCGCCAGGGGAAGGTTCACACAAC
CCAGCCCGGACGGTCTGGCTACAAGGTTCGGAGACACCGCGCATCCAACA
AACGTGACGGGTGCAACGGCAACAATCCTCAGCAGAACGGCCCGGGAAGC
GCTTCTGGTAGAGGGGGCAGCAAGACTAAGAAAACCGGTAAGCTTGGATA
CGCCGCGCCAATTTCCTCCGTGCCGCCACCATCTTCGGGCGCCTTATCAT
CATCTTCGCTGAAACAACGGCCGTCGTTTTCGGTAATTATTAGTGGTGAT
GAGAGTGGTGGCAGCGCCGGTACGGATCCGCCAGCAGCCGGTAGGGATAT
GGTCACAGCGGGGCATCGTTCCAGCCATCATGTGAAGAGCGATGTCAAGA
CCTTAGTAACTGGCTCTACAGCCACGTCTTCGTGTGCCGACCGGATCACC
CATGCCGCCGTGCACAACACCACGACACCAGACAGTAGGGCGTCACTGGA
TCCTTGTGATGGTCTCAAGCGAGGGGACATGAGGCTTCTCAGCAGGCCGA
CAGCGCTGAGTACGGCCAATCGTCGGATGCCAGCAGAGATCCCCTCGTAC
GGTCGTCGACGACAACGGCGCATGGATCCAAGCAACATCAGCAGCAGCAG
CTTCAGAAACAGCAGGAAAATAAACAGCGACAGCCGAAAAAACATGGCTC
AAAGAATCAAACACCAAAGAATCATCATCAGCAGGAGCAGCACCTGCAGA
AACAGCAGGAGGAGCCCAAGCATGAAGCACAAGCAGTTGGTACTTCGAAG
GCGAGCATCTCGCCTCATACCCCCGATCATCAGCGAGGCAAAGAAGAGAG
AACTGAACCCGCCCGCACCGCGAAGGGACTCGAGTTTTACGAGCTTTCAC
CAGCAACGTCAACGGACCACGAGGAACGGTCCCCGTTTCCTGAGAAAAAC
GCGGGCAGCAGAAAAAACGGCGACGCCGGGGTCGACTCCATCGATTCCTT
GTGCTCCTCGCTACTAGAGATTCTGGCCGAAAGCGAGGATGTTTCCTCCA
AAGCCGAGCTTGCAACCTTCACCTTGGGCGGGCGGAACAAGTTCCTCCCG
ACGGGGAAACCGCTGCTCGAAGAAACGACGCCGACAACTTCAGCGGTGAG
CAGCACATCGTCTTCTGCAGAAAGCAGGAAGAGCGATTTGTCCCCTGCTG
GCAGCATCCTTCCCAAACCGCAAGAGCTCGTCGATCACGGCCAAAGAGAC
CGCGAGAAGAAACGGACGAGGAACAGAAAGAAGGGGGAGAAAGAAAACGA
CGGCGGCGGCGGCGGTTCGCTGGTTCTTGGCAGCGTAGATGTGGCCGGCG
ACATCGCCCAGTGGGCTGCGGACAACAGCCGGGGAGGAGAGTTCACCAAG
GTGCTCGAAGCCGTCAGGCGAGACTCGGGAGTCGTGTCCGTCGACTTTCG
CGCGGTGCTGAAGCAAGGGAGGGGGAAAGGTGCAAGGGCCCAAATGTGAG
ATCAGGTGGCGGTGGGTTCCTATATACGTACAAAGGTTGATGAGGTTCCC
TCGTGTTGTCAATGTCTCGTCCATCTCGAAACCACCGAAGTAAACGTTGT
CCGAGACGACGTGTATGCGCGTGTGGGCACTCTCTAGCCTACTGTTTATG
GGTTTCTTCAAAACAGAAGATCTACAGTATTCCTATTCATGTTCGGAAAA
ACGCCCCAGGAGTGCCTTCATGACGGAAACGAAACCGAACCAACTTTAAG
CCTGGTATGGACGATTTGGGACGAATGTGTTGAGGGGCGAGTGCAAATCG
TTGTTGCCCTATTTTTATGGGGAGCACTTTGTGGAAAAATTTCAGACCCA
ACAAAGGACCACCACGGCAAAAAGTACAGCCAAGGAGGCCATGGCGAGTG
CCGAAAATTTGACTGCAGCAACATGAGCCCCTATCCTTTACCTTAGTTGT
TGAGCAAACACCGTCCACGTGGCGGTGATGAGGCTATGATATGCAGTATT
CACCCCCGAAGCCAATCACACGTTGGCCGTCAACACTCACATTGTACGTG
AAGTAGACGGGACTGTCGAATTGACATCCGGGCAGCAACAGCGGAAAAGA
AGGGCCAACAAACCTACGTAGCACGTGTGGGCACACGTCCTTCCTCCTTT
GTCCCTCCGTCGTTTTCGTCCGTACTTTCACGCAGCGATAAGGTACACGT
CGACATCCGCGCAGCGACTCCCGCGCAGGCGCGCATGGCGAGGGCGCTGC
TCCAGACGCATTTCAAGAGTCGGTCAGAGCTGCTGCGCCTGGAGCATGCC
CAGCGGTCCATGGAGGGCAGCCTGAAGGCCTTCGAGGCGAGACAGTGTTC
GCACGAAGCGCTGTGTACGGTAGAAATGCGACGTAGTCGATACGGCAGTA
TGGTGATGCGGGAAGTAAAAAGAGCGAGAGGTCTTCCTTGTGCCGTCTGT
CTCGGAGATAAGCAGATAAAAAACGATTCTCCTCGTACAAGAAGAGTTGA
AGAGAAATATTCGATATGTTCCTCGTGCATGTTTACACCCCGTTCTTCTT
TCCCTACCTATCCGTCTACACAGAGGCCAAGGTTCGCCCCCCCAACCCGG
CCATTTACCGCCTCGTCTATTCTGGTTCCATCAACCCGCTTCTAAACGTA
TGCGTGTACGGACGTGACTGACGCCTTCCATCCTTCACTCTCACTTCAAA
CCAAAACTACTGTCGGATGTCTACTATTCAAACCAAAACTACTGTCGGAT
GTCTACTAAAAACGAAACAATAGCGCGAGGTGTCCCAGGGCCTGCGCGTC
CAGTTCGCCTCCCGGCCGAAATGGATTGGGCTTCTCGTCGGCAAGGCTGG
GTCTCGAGTACGAGGATTGCGAAAATCCACAGGGTGCAGTATCGAGGTCA
TCGACGGCGGCGGCGGGGGTGGGCGGGGAGGTCCTGACGGGAATTGTGGA
GGGGGAGGGGGTGGTGGCGGTGGTGGCCACAAAGCGACCGGGGGCCAACC
CACTGCTCCCTCGTCGTGCAGGGTTGTGATCTGCGGGCCGGACGTGGGCA
GCGTGCAGAGAGCACGAGAAGAGATGGAGCTGACGGAAGTCAGGATGGCG
GTGAACCCTCAGCAGGTAAAGAAGACAGGGGAGGGTAAACGACGGGTTGG
TTCCAAGGACGCCCTGAAAAACTAAAGCATGCCTTCATGAGGAAACATTG
ATGAGTTGGAGGGGTGCTATAATAGAACGAACAAAGCACCACGACAACCA
AAGCGCTGCACTAGCTCGATCCCACTCGGTGCAGGTCCTTCTCCTCTCTA
TCGACCTCGATAATGCATGGTGTCTGGCCCTCGCCGTTGTGTCGTTCGAC
TCCCCCCCCTCAGGCTGCCTTGCTGGGGCGTCTCCCCCGCACTAAACTGC
TAGACCTTCGACAGCAGAGCCAGTGCATGGTGGTCGATCTTCAGTCTGAT
TCGGCGTGTCAAGAGAGGCAACAACAACAACAACAACAACAACAACAACA
ACAAGAGAACGCTCCTCCCACCAAGAACAATTATTCGTCGTCGGGAGCTG
TGACGGGGGTGATGTCGGTTAGAGTGATCGGGCCCCGTCCTACGGTGGAC
AGCGCGCGCGTGCTCCTCGGAGTGGTCCTGGAGTACATGGATCGGGAGAG
GGAACTGCGCGAGGGCGACAACGTCGTGCGGGAAAGGCTTCTGGTGAGAA
GCGAGACTTTGCCACCGTTCCAAGATTTCGGCGGAGTGTTGCACTCACAT
ACGCCCGAACGATGCGGAGTAGAAAGCACACGGCAACAAGCATTGTGCCG
CAAGCAGACCGTTTGTCGCTACCTCTACTGCGTGTAGACTAGATGTGTAC
CGAATGTTTACGGACGCGTGTTGTCCGATGTGGTGCCGTGCGGTGGGGTT
AGGACGCGTAACCATTCCGCTCTTGTATAGTTTGCTTTATCGGCGGGAGA
TTGTGTGGTTTCGTAAGGTCGTCAAATCCAACCGGCGATGACGGCGTCCA
ACGATACAAGTACCACGCATATCAATCACCGTCTATCCAAGCTGCGATAA
CGTTGTCTCGGGCTGCAACCTGATTCACCCCTCCCGCCCGCCACCAACCG
CAACCCGCCCGCGGACGTGTTTTGAGTCGTGTCCAGGCCATGCAGGCGAG
CTTCGGGCACCCAGGCACCGCTCGGCCCGCGGTATGGGCTGGAAAAGCAG
GGAGAGGTGGCTATGGTAAGAGAGCACCACCACCGGGAACATCACCAAAC
TCGACGGGCGAAAACCGACAGGCCAACCAGCGGGATAGCTAGCTCGCTCG
CATAGCCTATTGCCATCATTGACCACAGTCGTTGAGTGAGCGAGATGCGT
CACAAAAAATCATCAGAAGGTAATAGATGTGTGGCCACCCGGATTGAAGC
TCATACACGCCATAAATGTGTGTCGTGCGAGCACTGATTTCAAGTGATGA
AGAAAAAACAAAAATGCAGCAGAGTGATGGGACTGTTTGCTGGAGGAGAC
CTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5776:402..4906-

>mRNA_Ecto-sp13_S_contig5776.16203.1 ID=mRNA_Ecto-sp13_S_contig5776.16203.1|Name=mRNA_Ecto-sp13_S_contig5776.16203.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1017bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5776:402..4906- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGATCATGCAGCCTCGTCCGCTCGCCAGGGGAAGGTTCACACAAC
CCAGCCCGGACGGTCTGGCTACAAGGTTCGGAGACACCGCGCATCCAACA
AACGTGACGGGTGCAACGGCAACAATCCTCAGCAGAACGGCCCGGGAAGC
GCTTCTGGTAGAGGGGGCAGCAAGACTAAGAAAACCGGTAAGCTTGGATA
CGCCGCGCCAATTTCCTCCGTGCCGCCACCATCTTCGGGCGCCTTATCAT
CATCTTCGCTGAAACAACGGCCGTCGTTTTCGGTAATTATTAGTGGTGAT
GAGAGTGGTGGCAGCGCCGGTACGGATCCGCCAGCAGCCGGTAGGGATAT
GGTCACAGCGGGGCATCGTTCCAGCCATCATGTGAAGAGCGATGTCAAGA
CCTTAGTAACTGGCTCTACAGCCACGTCTTCGTGTGCCGACCGGATCACC
CATGCCGCCGTGCACAACACCACGACACCAGACAGTAGGGCGTCACTGGA
TCCTTGTGATGGTCTCAAGCGAGGGGACATGAGGCTTCTCAGCAGGCCGA
CAGCGCTGAGTACGGCCAATCGTCGGATGCCAGCAGAGATCCCCTCGTAC
GGTCGTCGACGACAACGGCGCATGGATCCAAGCAACATCAGCAGCAGCAG
CTTCAGAAACAGCAGGAAAATAAACAGCGACAGCCGAAAAAACATGGCTC
AAAGAATCAAACACCAAAGAATCATCATCAGCAGGAGCAGCACCTGCAGA
AACAGCAGGAGGAGCCCAAGCATGAAGCACAAGCAGTTGGTACTTCGAAG
GCGAGCATCTCGCCTCATACCCCCGATCATCAGCGAGGCAAAGAAGAGAG
AACTGAACCCGCCCGCACCGCGAAGGGACTCGAGTTTTACGAGCTTTCAC
CAGCAACGTCAACGGACCACGAGGAACGGTCCCCGTTTCCTGAGAAAAAC
GCGGGCAGCAGAAAAAACGGCGACGCCGGGGTCGACTCCATCGATTCCTT
GTGCTCCTCGCTACTAG
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