mRNA_Ecto-sp13_S_contig5775.16202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5775.16202.1
Unique NamemRNA_Ecto-sp13_S_contig5775.16202.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5775.16202.1 vs. uniprot
Match: D7FJ94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ94_ECTSI)

HSP 1 Score: 286 bits (733), Expect = 2.010e-88
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:    1 MDQRKRAPSGRSEPPGAGGGETFAEAPAPTVPVEVLDTVFEFLDGNGLLSCEAVSYCWRRATDRTNLWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYRETFLDGNRGNRSTVLDWNMEAVTGGAADGAEGMEGGDPEQ 420
            MDQRKRAPSGRSEPPGAGGGE FAEAPAPTVPVEVLDTVFEFLDGNGLLSCEAVSYCWRRATDR +LWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYRETFLDGNRGNRSTVLDWNMEAVTGGAADGA+GMEGGDPEQ
Sbjct:    1 MDQRKRAPSGRSEPPGAGGGEAFAEAPAPTVPVEVLDTVFEFLDGNGLLSCEAVSYCWRRATDRAHLWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYRETFLDGNRGNRSTVLDWNMEAVTGGAADGADGMEGGDPEQ 140
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5775.16202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ94_ECTSI2.010e-8897.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5775contigEcto-sp13_S_contig5775:5563..8406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score289.3
Seed ortholog evalue1e-75
Seed eggNOG ortholog2880.D7FJ94
Model size435
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Zinc-binding domain, present in Dystrophin, CREB-binding protein.
EggNOG OGs28J50@1,2QRH6@2759
Cds size435
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463800.6149025-CDS-Ecto-sp13_S_contig5775:5562..57901681463800.6149025-CDS-Ecto-sp13_S_contig5775:5562..5790Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 5563..5790 -
1681463800.6261287-CDS-Ecto-sp13_S_contig5775:6419..65031681463800.6261287-CDS-Ecto-sp13_S_contig5775:6419..6503Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 6420..6503 -
1681463800.6361895-CDS-Ecto-sp13_S_contig5775:8283..84061681463800.6361895-CDS-Ecto-sp13_S_contig5775:8283..8406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5775 8284..8406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5775.16202.1prot_Ecto-sp13_S_contig5775.16202.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5775 5563..8406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5775.16202.1

>prot_Ecto-sp13_S_contig5775.16202.1 ID=prot_Ecto-sp13_S_contig5775.16202.1|Name=mRNA_Ecto-sp13_S_contig5775.16202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MDQRKRAPSGRSEPPGAGGGETFAEAPAPTVPVEVLDTVFEFLDGNGLLS
CEAVSYCWRRATDRTNLWQRACMSAFPHLRDYYFSRSPYTCCSAYEGDYR
ETFLDGNRGNRSTVLDWNMEAVTGGAADGAEGMEGGDPEQASEG*
back to top

mRNA from alignment at Ecto-sp13_S_contig5775:5563..8406-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5775.16202.1 ID=mRNA_Ecto-sp13_S_contig5775.16202.1|Name=mRNA_Ecto-sp13_S_contig5775.16202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2844bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5775:5563..8406- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCAAAGGAAGAGGGCTCCGAGCGGGAGGAGCGAGCCGCCTGGAGC
TGGAGGAGGCGAGACCTTCGCCGAAGCACCGGCCCCGACGGTTCCTGTGG
AGGTGCTCGACACGGTGTTCGAGGTGGGCCTGATGACAACAACCCTATCT
ACCGACGGCAGCCTGATATTTTCCGTTATCTCTTGAAAACAATGTGCCGG
AATTCCACCGCCGCCGTTCGACGAAAAATGCGGAAGACCCTGCGGGCAGC
GCTGGCTCCTTGGCAACGTCCAATGCCACTGCCGTGTTCTCGAACACTGG
CGTGGTCGGGCGTGCGTGCGTTTTTTGGAGGGGGCTTTGTCTCCCACCTG
TCTGTCGGCTGACCCTGATTTCTTTTTCAGGCGGGAGATTTTGACGGCGG
TGTGTTGTTGGGCATTTTGTTTGCTTGCCTTGCAGATACAACCACAAGAT
TCTTTTCAACCGAAATTCACTACATGTACTACACTTCTTTCGTGTACATC
GGCGGAGAATATATACTCCTCTCTACTTCTTACCATAGCAGATCACACAT
CCTGGCGTAGGGTCGCTCTTGCTACATAGCGGGACGCGGTAGATGCAGCA
GATGTGTGCATGTGGCGGGCGAGAGAGACAGAAATAGAACCACGACCAGC
ACCAAACGGAAAGCGTTGTTCCTTCCACAAGACATCTTGCACGCCAAGAG
CGACGGCGGGATGTTTGCAACTTTTGGCAACAAGTTGTTANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCATGGAGACCACAGGATATTGTAGTTGGATATGAGTACAGTATCTTC
TCACGGGGAGTCTTAATTTCCCGCTTTCTGTGTATCCGTGGGTAAAGATA
CCGTCGTTCCAAGTATGTACCGGCGGTGCGATGTTGGATCTATACAGCCG
CATGGAAGTCATTTCCGTACACGCGTCGTTTCGGCCATGAGGCTGATTTT
TGGCGCTTGCAAGCATCTCCTAGCAGCTGTTGTACGTACTGTGGGAGGTA
AACAAATGTCGGTGAGATATCCCCCCGCATGTCGAAGCAACTTCGCTGCA
GAGCGTGCCGGTTCCGTGAGTACACATGATGGAAACAATTGCTCAACGCT
TGCTAAGCAATTCAGACAGAACGGCTGAAACGCCAAACCGAGTGCGACGC
CGACCAAACATGCAGGTAGGCCATTGAGACTCTGCAAAATCGACGCTATC
GAACAGCTGCTAAAAGGCGACGTGGCGGCCAATAAGAAACGCCAAGCGAA
TTAGTTGCTGATGTGATTTTTCCCGACTCGTGTATGTGAAGGATATGTTG
CAAAACAAGACAATAACCCCATTTTGAGTCACGAGGTACGGGGAGCCTCA
ACCTCGAGCTTGCTCCGTTGACCGTTTCGTATTATCCGGAGTCCGTTAGG
TCCTAGTTGTATCCTGCTGGGTACTGGGCCTTTTCTTCTGTTTGGCTCAT
CTCTCCAACTTTCTTTTTTTGGCGGCGTTTCAACCTCAACGGTGCCGTCT
CAGTTTCTGGACGGGAACGGGCTGCTGTCATGCGAGGCCGTCTCGTACTG
CTGGCGGCGTGCCACCGATCGGACAAACTTGTGGCAGGTGAGGGGCCGGG
CTCACCAGGTGATCCGAGATTATTTTTTGCTTCTAAAAGGGGAGCTCTTT
TCTTCCCGCTCTCTGCTAAGAAAGTTCCCCTTCGGGTGATTGTGGCGTTA
TCTCGAACGGCCAGCCTTTCTTTGGTTTAAATGCATTTTTACATTTTCTT
CAAAATGGGGGGCAAGTGTTAGACGGGAACGGTCCCACTCCATGGACGCG
CATCAGCGGGAGACATCGCGTGCTTAGCGTCGTCGTACCCCGGCCGTACG
GTCGGAGTGATGCGGAAACTAAGTGAATTAGTGCTCGTCAATAGAGTCCG
AGGGCTTGATGCTGGGGGAGGGCAGGTTCGACGACTCAAGGTAGCGGGGA
CTTAATTTTTCCCCGCAAGTGCGTTTGGGGTAAAGCGTGACTCGTGCGTT
ATTGTAGACGGGGTGGTGCGTGACGACGCCGGGAGTGACTGGTGTTCTTC
CCACGAGAGACTACCATACCACCCCCTCCACTGCAGCAAGAAACTCCTTC
ATGGGGAGAAGTCACGCTATCTCCGCTGAGGCTTTTTTGTGTGTCTTGAT
GCAAGACTATAAACTCACGTATCCGCTATATTGTCCGACCTGGTCTGCCT
CCCTCCCCCCTCCCAGCGGGCGTGCATGTCTGCTTTCCCCCACCTGCGGG
ACTACTACTTTAGCCGGTCGCCGTACACGTGCTGCAGCGCGTACGAAGGG
GACTACAGAGAAACATTCCTCGACGGCAACCGAGGTAACCGCTCCACGGT
ATTGGACTGGAACATGGAGGCTGTAACGGGGGGCGCCGCGGACGGGGCTG
AAGGAATGGAGGGGGGGGACCCCGAACAGGCGAGTGAGGGATGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5775:5563..8406-

>mRNA_Ecto-sp13_S_contig5775.16202.1 ID=mRNA_Ecto-sp13_S_contig5775.16202.1|Name=mRNA_Ecto-sp13_S_contig5775.16202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5775:5563..8406- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATCAAAGGAAGAGGGCTCCGAGCGGGAGGAGCGAGCCGCCTGGAGC
TGGAGGAGGCGAGACCTTCGCCGAAGCACCGGCCCCGACGGTTCCTGTGG
AGGTGCTCGACACGGTGTTCGAGTTTCTGGACGGGAACGGGCTGCTGTCA
TGCGAGGCCGTCTCGTACTGCTGGCGGCGTGCCACCGATCGGACAAACTT
GTGGCAGCGGGCGTGCATGTCTGCTTTCCCCCACCTGCGGGACTACTACT
TTAGCCGGTCGCCGTACACGTGCTGCAGCGCGTACGAAGGGGACTACAGA
GAAACATTCCTCGACGGCAACCGAGGTAACCGCTCCACGGTATTGGACTG
GAACATGGAGGCTGTAACGGGGGGCGCCGCGGACGGGGCTGAAGGAATGG
AGGGGGGGGACCCCGAACAGGCGAGTGAGGGATGA
back to top