mRNA_Ecto-sp13_S_contig577.16194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig577.16194.1
Unique NamemRNA_Ecto-sp13_S_contig577.16194.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig577.16194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig577contigEcto-sp13_S_contig577:23353..23940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size291
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463799.531097-UTR-Ecto-sp13_S_contig577:23352..234091681463799.531097-UTR-Ecto-sp13_S_contig577:23352..23409Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig577 23353..23409 -
1681463799.557789-UTR-Ecto-sp13_S_contig577:23877..239401681463799.557789-UTR-Ecto-sp13_S_contig577:23877..23940Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig577 23878..23940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463799.5405474-CDS-Ecto-sp13_S_contig577:23409..234671681463799.5405474-CDS-Ecto-sp13_S_contig577:23409..23467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig577 23410..23467 -
1681463799.549267-CDS-Ecto-sp13_S_contig577:23764..238771681463799.549267-CDS-Ecto-sp13_S_contig577:23764..23877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig577 23765..23877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig577.16194.1prot_Ecto-sp13_S_contig577.16194.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig577 23410..23877 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig577.16194.1

>prot_Ecto-sp13_S_contig577.16194.1 ID=prot_Ecto-sp13_S_contig577.16194.1|Name=mRNA_Ecto-sp13_S_contig577.16194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
MGLTRLLLPSQATRLGGFVLIYYTRAVTRASLTVLPTSGYHHTNREDNCT
YLLGVQ*
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mRNA from alignment at Ecto-sp13_S_contig577:23353..23940-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig577.16194.1 ID=mRNA_Ecto-sp13_S_contig577.16194.1|Name=mRNA_Ecto-sp13_S_contig577.16194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig577:23353..23940- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGGCAGCTTCGATTCCATTTTCTCAAGATGATGTGCCGCGCATCATAGC
CCGAAGGCCCACAATGGGGCTCACACGGCTCCTCCTGCCATCGCAAGCTA
CAAGGTTGGGCGGATTCGTTCTGATCTACTACACTCGTGCTGTGACGAGA
GCCAGTTTGACGGTGCTACCGACAAGGTACAGAGGTGTGTTGTCTTCTTG
GTACATACACACGACTTAAACGGGAGCAGCGTGTACGCTACACACCACGG
TCGGTCGTGTCATGTGCAGTAGCATACACGCTCCTTTACTGGGTGTGTGC
TCTATCTTGCCGACAGAGAAGAGAATTTTCGAAAATCGTTTTGGACGGAT
ATCAGTTTTTTTTCTTTTTCATGCGGGTAAGTGACGTCTCCATTCCCGAG
CGTTCCGCCGCGTCTCCCCCGGTTCCCACTTCCCACTTCGTGCACCGCTT
TCTCTCCGTTTCCTCGTGCACAGCGGGTACCATCACACCAACAGAGAGGA
CAACTGTACATACCTTCTTGGAGTGCAGTAGCAGCAGAAGGCAAGGGCAG
ACTTCTCTCCGACGGGGACAACTCCGCACAAATCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig577:23353..23940-

>mRNA_Ecto-sp13_S_contig577.16194.1 ID=mRNA_Ecto-sp13_S_contig577.16194.1|Name=mRNA_Ecto-sp13_S_contig577.16194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig577:23353..23940- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCTCACACGGCTCCTCCTGCCATCGCAAGCTACAAGGTTGGGCGG
ATTCGTTCTGATCTACTACACTCGTGCTGTGACGAGAGCCAGTTTGACGG
TGCTACCGACAAGCGGGTACCATCACACCAACAGAGAGGACAACTGTACA
TACCTTCTTGGAGTGCAGTAG
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