mRNA_Ecto-sp13_S_contig5769.16191.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5769.16191.1
Unique NamemRNA_Ecto-sp13_S_contig5769.16191.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5769.16191.1 vs. uniprot
Match: A0A6H5L192_9PHAE (HOOK domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L192_9PHAE)

HSP 1 Score: 389 bits (999), Expect = 1.420e-123
Identity = 210/248 (84.68%), Postives = 217/248 (87.50%), Query Frame = 1 
Query:   91 MDGRHEQGLVAWANTFSSSFPEGAAPAVSVADFTNGDALIPIARTILGDDHDDDDNDGQATASGWARVISYLLSADLIEKDVQVPTEEDTKRDMAVTCLEALLHHTCQDSCAGRATFIRQIMSLDTDVQSVLRHVVAGEEPSDEDGDACSSEAGSPSRDDGNGGASSSFPGSPTASAAAHLSPDSGGSRGRRASITTSGSSYDSSRSDEEGDLGLKSWYSPHPR-SARRKSKVPTGGGTGERAARVGP 831
            MDGRHEQGLVAWANTFSSSFPEGAAPA S+A FTNGDALIPIARTILGD+HDD D+DGQATASGWA VISYL SADLIEKD+QVPTEED+KRDMAVTCLEALLHHTCQD+CAGRATFIRQIMSLDTDVQSVLRHVVAGEEP DEDGDA SSEAGSP RDD            P A AAAHLSP SG SR RR SITTSGSSYDSS SDEE  LGL+SWYSPHPR SARRKSKVPTGGGTG RAARVGP
Sbjct:    1 MDGRHEQGLVAWANTFSSSFPEGAAPAASLAHFTNGDALIPIARTILGDNHDDHDSDGQATASGWAGVISYLHSADLIEKDLQVPTEEDSKRDMAVTCLEALLHHTCQDTCAGRATFIRQIMSLDTDVQSVLRHVVAGEEPLDEDGDASSSEAGSPYRDDRXXXXXXXXXXXPAAIAAAHLSPGSGASRRRRTSITTSGSSYDSSHSDEEDGLGLESWYSPHPRRSARRKSKVPTGGGTGGRAARVGP 248
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5769.16191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L192_9PHAE1.420e-12384.68HOOK domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5769contigEcto-sp13_S_contig5769:4559..5389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score376.3
Seed ortholog evalue1.2e-101
Seed eggNOG ortholog2880.D7G849
Model size832
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2APQW@1,2RZH8@2759
Ec32 ortholog descriptionHook-related protein family
Ec32 orthologEc-12_001500.1
Cds size831
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463799.5045955-CDS-Ecto-sp13_S_contig5769:4558..53891681463799.5045955-CDS-Ecto-sp13_S_contig5769:4558..5389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5769 4559..5389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5769.16191.1prot_Ecto-sp13_S_contig5769.16191.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5769 4559..5389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5769.16191.1

>prot_Ecto-sp13_S_contig5769.16191.1 ID=prot_Ecto-sp13_S_contig5769.16191.1|Name=mRNA_Ecto-sp13_S_contig5769.16191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=277bp
TPACCTVAPHKGTTISNGTELCILEADLILMDGRHEQGLVAWANTFSSSF
PEGAAPAVSVADFTNGDALIPIARTILGDDHDDDDNDGQATASGWARVIS
YLLSADLIEKDVQVPTEEDTKRDMAVTCLEALLHHTCQDSCAGRATFIRQ
IMSLDTDVQSVLRHVVAGEEPSDEDGDACSSEAGSPSRDDGNGGASSSFP
GSPTASAAAHLSPDSGGSRGRRASITTSGSSYDSSRSDEEGDLGLKSWYS
PHPRSARRKSKVPTGGGTGERAARVGP
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mRNA from alignment at Ecto-sp13_S_contig5769:4559..5389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5769.16191.1 ID=mRNA_Ecto-sp13_S_contig5769.16191.1|Name=mRNA_Ecto-sp13_S_contig5769.16191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5769:4559..5389+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACCTGCCTGCTGCACGGTTGCTCCTCACAAAGGGACAACCATCTCCAA
CGGCACAGAGCTGTGTATTCTTGAGGCTGACTTGATACTCATGGATGGTC
GCCATGAGCAAGGTCTCGTGGCGTGGGCAAACACGTTCAGCTCTTCCTTC
CCAGAAGGGGCAGCACCGGCAGTCTCTGTGGCGGACTTCACCAACGGCGA
CGCTCTCATCCCGATCGCCCGCACTATCTTAGGCGACGACCACGACGACG
ACGATAACGATGGGCAAGCAACCGCTTCTGGGTGGGCCCGCGTCATCTCA
TATCTGCTCTCGGCCGATTTGATCGAGAAAGATGTTCAAGTCCCCACCGA
GGAAGACACCAAGAGAGACATGGCAGTTACGTGTCTGGAGGCCCTGTTGC
ACCACACTTGCCAAGACAGCTGCGCCGGCCGAGCGACCTTCATCCGCCAA
ATCATGTCCCTCGACACCGACGTGCAGAGCGTTCTGAGGCATGTCGTGGC
CGGCGAGGAGCCGTCGGACGAAGACGGCGACGCGTGCAGCTCCGAAGCCG
GCTCCCCTTCCAGGGATGACGGCAACGGCGGCGCCAGCAGCAGCTTCCCG
GGATCCCCCACCGCGAGCGCGGCGGCACACCTGTCTCCTGACAGTGGCGG
CAGCCGCGGGCGCCGCGCTAGCATCACCACTAGCGGGTCGTCCTACGACA
GCAGCCGCTCTGACGAAGAAGGCGACCTCGGATTGAAAAGCTGGTACTCC
CCCCACCCAAGGAGCGCCCGCCGGAAGTCCAAGGTCCCGACAGGGGGCGG
GACGGGGGAACGCGCGGCGCGCGTGGGGCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5769:4559..5389+

>mRNA_Ecto-sp13_S_contig5769.16191.1 ID=mRNA_Ecto-sp13_S_contig5769.16191.1|Name=mRNA_Ecto-sp13_S_contig5769.16191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=831bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5769:4559..5389+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACACCTGCCTGCTGCACGGTTGCTCCTCACAAAGGGACAACCATCTCCAA
CGGCACAGAGCTGTGTATTCTTGAGGCTGACTTGATACTCATGGATGGTC
GCCATGAGCAAGGTCTCGTGGCGTGGGCAAACACGTTCAGCTCTTCCTTC
CCAGAAGGGGCAGCACCGGCAGTCTCTGTGGCGGACTTCACCAACGGCGA
CGCTCTCATCCCGATCGCCCGCACTATCTTAGGCGACGACCACGACGACG
ACGATAACGATGGGCAAGCAACCGCTTCTGGGTGGGCCCGCGTCATCTCA
TATCTGCTCTCGGCCGATTTGATCGAGAAAGATGTTCAAGTCCCCACCGA
GGAAGACACCAAGAGAGACATGGCAGTTACGTGTCTGGAGGCCCTGTTGC
ACCACACTTGCCAAGACAGCTGCGCCGGCCGAGCGACCTTCATCCGCCAA
ATCATGTCCCTCGACACCGACGTGCAGAGCGTTCTGAGGCATGTCGTGGC
CGGCGAGGAGCCGTCGGACGAAGACGGCGACGCGTGCAGCTCCGAAGCCG
GCTCCCCTTCCAGGGATGACGGCAACGGCGGCGCCAGCAGCAGCTTCCCG
GGATCCCCCACCGCGAGCGCGGCGGCACACCTGTCTCCTGACAGTGGCGG
CAGCCGCGGGCGCCGCGCTAGCATCACCACTAGCGGGTCGTCCTACGACA
GCAGCCGCTCTGACGAAGAAGGCGACCTCGGATTGAAAAGCTGGTACTCC
CCCCACCCAAGGAGCGCCCGCCGGAAGTCCAAGGTCCCGACAGGGGGCGG
GACGGGGGAACGCGCGGCGCGCGTGGGGCCA
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