mRNA_Ecto-sp13_S_contig5760.16182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: D8LRD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD9_ECTSI) HSP 1 Score: 154 bits (389), Expect = 5.740e-42 Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCE GSVSPRER CGGPSRMCPAGSGWPIMVDSG
Sbjct: 383 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCEPGSVSPRERVCGGPSRMCPAGSGWPIMVDSG 453
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: A0A6H5JG60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG60_9PHAE) HSP 1 Score: 151 bits (381), Expect = 6.770e-41 Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCE GSVS RERACGGPS+MCPAGSGWPIMVDSG
Sbjct: 184 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCEPGSVSSRERACGGPSQMCPAGSGWPIMVDSG 254
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: A0A7S3M821_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M821_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.150e-17 Identity = 41/72 (56.94%), Postives = 48/72 (66.67%), Query Frame = 1
Query: 1 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSM-GFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
PG YA GILY CPAG +GA+ GLS+ CSGPCS+ G+YC GS+SP R CGG CP + PI V SG
Sbjct: 298 PGHYAFNGILYVCPAGFYGATSGLSTATCSGPCSVPGYYCPAGSISPVMRYCGGDDVFCPPYTVAPIRVHSG 369
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: UPI0007116385 (hypothetical protein n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007116385) HSP 1 Score: 78.2 bits (191), Expect = 3.300e-15 Identity = 37/71 (52.11%), Postives = 42/71 (59.15%), Query Frame = 1
Query: 1 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
PG Y G LY+CPAG FG S+GLSS CSG C GF C GS S CG + CP GS +P+ VD G
Sbjct: 516 PGHYCMNGSLYSCPAGFFGDSYGLSSISCSGACHHGFICPSGSSSSFTIDCGNATVYCPTGSSYPLFVDDG 586
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: W4GA05_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GA05_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.110e-14 Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 4 GSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
GS+ D CPAG+FGA+ GL SPLCSGPCS G++C GS SP ++ CG P+ CP G+ V +G
Sbjct: 29 GSFWDGSACTLCPAGMFGATRGLISPLCSGPCSGGYFCPVGSTSPVQQQCGSPNYYCPPGTPLRRTVATG 98
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: H6S462_PLAVT (Uncharacterized protein (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S462_PLAVT) HSP 1 Score: 72.8 bits (177), Expect = 8.350e-14 Identity = 36/76 (47.37%), Postives = 46/76 (60.53%), Query Frame = 1
Query: 1 PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCER----GSVSPRERACGGPSRMCPAGSG-WPIMVDSG 213
PG + GI Y CPAG +GA+ GLS+PLCSG C+ G+YC SVS + CG CP G+G P++V SG
Sbjct: 51 PGYFCRHGIRYQCPAGTYGATSGLSTPLCSGKCAPGYYCPSYPGLPSVSQTQNECGSSLTYCPEGTGNAPLVVPSG 126
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: D8M6U0_BLAHO (Uncharacterized protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M6U0_BLAHO) HSP 1 Score: 72.8 bits (177), Expect = 2.590e-13 Identity = 30/70 (42.86%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 4 GSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
G+Y + Y CPAG +G + GLS+PLCSG C GFYC G+++ CG + CP GS P++ G
Sbjct: 28 GNYCKNNVQYICPAGTYGNTLGLSTPLCSGLCVAGFYCPEGTINYVLNRCGAVDKYCPQGSSTPLLAPEG 97
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: D0N264_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N264_PHYIT) HSP 1 Score: 70.5 bits (171), Expect = 1.610e-12 Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 1
Query: 4 GSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
G+Y D CP G FGA GL+S CSG C+ GF+C +GS S RE+ CG + CP+GS VD G
Sbjct: 27 GAYFDGAKCLPCPGGTFGAVPGLASSSCSGLCTAGFFCPKGSTSSREKLCGASTFYCPSGSAERHPVDEG 96
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: A0A6A3NR02_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NR02_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 5.780e-12 Identity = 31/59 (52.54%), Postives = 34/59 (57.63%), Query Frame = 1
Query: 37 CPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
CP G FG + GL+S CSGPCS GFYC RGS S + CG CP GS P V G
Sbjct: 291 CPGGTFGNATGLASAACSGPCSAGFYCPRGSTSATQLPCGSVDVFCPLGSALPTPVSPG 349
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Match: H3HDW3_PHYRM (Cellulose synthase 3 n=2 Tax=Peronosporaceae TaxID=4777 RepID=H3HDW3_PHYRM) HSP 1 Score: 68.6 bits (166), Expect = 8.030e-12 Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 37 CPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERACGGPSRMCPAGSGWPIMVDSG 213
CPAG FG+ GL+S CSG C+ G+YC RGS S + CG + CP GS P+ V SG
Sbjct: 1242 CPAGTFGSVSGLASAACSGLCTAGYYCPRGSTSDTQLPCGSVNVFCPPGSALPVQVASG 1300 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5760.16182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig5760.16182.1 >prot_Ecto-sp13_S_contig5760.16182.1 ID=prot_Ecto-sp13_S_contig5760.16182.1|Name=mRNA_Ecto-sp13_S_contig5760.16182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp PGSYADQGILYTCPAGVFGASHGLSSPLCSGPCSMGFYCERGSVSPRERAback to top mRNA from alignment at Ecto-sp13_S_contig5760:664..879+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig5760.16182.1 ID=mRNA_Ecto-sp13_S_contig5760.16182.1|Name=mRNA_Ecto-sp13_S_contig5760.16182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5760:664..879+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5760:664..879+ >mRNA_Ecto-sp13_S_contig5760.16182.1 ID=mRNA_Ecto-sp13_S_contig5760.16182.1|Name=mRNA_Ecto-sp13_S_contig5760.16182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5760:664..879+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |