prot_Ecto-sp13_S_contig5748.16159.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5748.16159.1
Unique Nameprot_Ecto-sp13_S_contig5748.16159.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length510
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5748.16159.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 624 bits (1610), Expect = 1.410e-207
Identity = 436/509 (85.66%), Postives = 437/509 (85.85%), Query Frame = 0 
Query:   18 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSELVSATPATGGSVELDFLSYNTVIRACAAAGEAE---------------EALKTREEMRAAGIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPSPAAERGSAARVTSLATEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLENGVPPSPRVFHGLMEAYSRAGEWERAQQCLDDMRQ-GSGWLPGDDGRERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESEQRLARLGEEENASPSLGANNGVRTVPQLSEDDAAPRRSTDSYRLGMEACRRSGDTRGVMSTFVIMEEEGFEPDVACFNEALHACAEGGGRFERAAAFLEEMKEAGLCPDNVSYSAALLACESCPDQEGAAKTAFDL 510
            MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSE+ SA PA GGSVELDFLSYNTVIRACAAAGEAE               EALKTREEMRAA IPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                ERLENGVPPSPRV HGLMEAYSRAGEWERAQQCLDDMRQ GSGWLPGDDGRERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESEQRLAR GEEEN S SLGANNGVRTVPQLSEDDAAPRRSTDSYRLGMEACRR GDTRGVMSTFVIMEEEGFEPDVAC        AEGGGRFERAAAFLEEMKEAGLCPDNVSYSAALLACESC DQEGAAKTAFDL
Sbjct:    1 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASAPPAAGGSVELDFLSYNTVIRACAAAGEAEDVRDNDEAFFGGKALEALKTREEMRAADIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPWSQTLRHRQRRRQERLENGVPPSPRVIHGLMEAYSRAGEWERAQQCLDDMRQAGSGWLPGDDGRERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESEQRLAREGEEENVSLSLGANNGVRTVPQLSEDDAAPRRSTDSYRLGMEACRRGGDTRGVMSTFVIMEEEGFEPDVAC--------AEGGGRFERAAAFLEEMKEAGLCPDNVSYSAALLACESCHDQEGAAKTAFDL 488
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BLAST of mRNA_Ecto-sp13_S_contig5748.16159.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 2.480e-132
Identity = 270/442 (61.09%), Postives = 272/442 (61.54%), Query Frame = 0 
Query:    8 VDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSELVSATPATGGSVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPSPAAERGSAARVTSLATEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLENGVPPSPRVFHGLMEAYSRAGEWERAQQCLDDMRQGSGWLPGDDGRERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFXXXXXXXXXXXXXARATSLLAEMATLESEQRLARLGEEENASPSLGANN-GVRTVPQLSEDDAAPRRSTDSYRLGMEACRRSGDTRGVMSTFVIMEEEGFEPDV 448
            VDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSE+ SATPATGG VELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGI                     AAEAVVREMVA                                                                                                                                  YSRAGEWERAQQCLDDMRQGSGWLP DDG+ERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGI       XXXXXXXXXXXXX  ATSLLAEMATLESE RLARLGEEE ASPSLGANN GVRTVPQ SEDDAAPRRSTDSYRLGMEACRR GD RGVMSTFVIMEEEGFE DV
Sbjct:   91 VDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIXXXXXXXXXXXXXXXXXXXXXAAEAVVREMVA----------------------------------------------------------------------------------------------------------------------------------YSRAGEWERAQQCLDDMRQGSGWLPEDDGQERVGAGTGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIXXXXXXXXXXXXXXXXXXXXXXATSLLAEMATLESEHRLARLGEEEKASPSLGANNQGVRTVPQPSEDDAAPRRSTDSYRLGMEACRRGGDARGVMSTFVIMEEEGFEADV 402
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BLAST of mRNA_Ecto-sp13_S_contig5748.16159.1 vs. uniprot
Match: A0A835ZDL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL2_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.460e-5
Identity = 47/132 (35.61%), Postives = 67/132 (50.76%), Query Frame = 0 
Query:    6 GEVDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSELVSATPATGGSVELDFLSYNTVI----RACAAAGEAEEALKTREEMRAAGIPADAYTYEALSTACGLAGDWEAAEAVVREMV 133
            G++   L TL  ++++      PN    NA L A +R G    +   L +L S   A   SV  + +SYNT++    RA   AG    AL   ++MRAAG+P DA TY  L   C  AG+   AEA++ EM+
Sbjct:  105 GDMTTVLATLDTIKANRR----PNVFTLNAVLNAALRCGC---SDATLDQLWSQLTAAPCSVTPNTVSYNTLLKRFLRAPRGAGALASALAVAQQMRAAGVPLDAVTYNTLLNLCVRAGNLARAEALLAEML 229
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5748.16159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE1.410e-20785.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI2.480e-13261.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDL2_9STRA3.460e-535.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 246..377
e-value: 3.7E-15
score: 57.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 378..509
e-value: 3.5E-16
score: 61.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..232
e-value: 3.8E-27
score: 97.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 33..134
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 73..116
e-value: 2.3E-8
score: 34.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 439..494
e-value: 2.1E-5
score: 24.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 73..105
e-value: 4.3E-7
score: 27.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 31..58
e-value: 0.38
score: 11.1
coord: 259..283
e-value: 0.024
score: 14.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 105..135
score: 8.243
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 70..104
score: 11.301
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 306..340
score: 8.692
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 254..284
score: 8.385
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 412..446
score: 8.287
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 29..59
score: 7.366
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 447..482
score: 10.534
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..21
score: 5.316
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 415..489
coord: 250..369
coord: 6..133

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5748contigEcto-sp13_S_contig5748:66..5316 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5748.16159.1mRNA_Ecto-sp13_S_contig5748.16159.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5748 66..5316 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5748.16159.1 ID=prot_Ecto-sp13_S_contig5748.16159.1|Name=mRNA_Ecto-sp13_S_contig5748.16159.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=510bp
SLAHGGEVDLALRTLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREAR
GLLSELVSATPATGGSVELDFLSYNTVIRACAAAGEAEEALKTREEMRAA
GIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSSSSSSSSSSSSS
SSSSSSSSSAAAAAATSATAAEIPSPAAERGSAARVTSLATEEEAAAATA
ADVAAAAAAAAAGAGSGSSAEEEEEDEEEDSWSQTLRHRQRRRRERLENG
VPPSPRVFHGLMEAYSRAGEWERAQQCLDDMRQGSGWLPGDDGRERVGAG
TGVKPDSTSVGWAIQACAAAGQWDRALATFSGAKSDGIEPGQLCFDAALL
ACAVGGQGARATSLLAEMATLESEQRLARLGEEENASPSLGANNGVRTVP
QLSEDDAAPRRSTDSYRLGMEACRRSGDTRGVMSTFVIMEEEGFEPDVAC
FNEALHACAEGGGRFERAAAFLEEMKEAGLCPDNVSYSAALLACESCPDQ
EGAAKTAFDL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat