prot_Ecto-sp13_S_contig57387.16146.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig57387.16146.1
Unique Nameprot_Ecto-sp13_S_contig57387.16146.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57387.16146.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 2.800e-19
Identity = 48/79 (60.76%), Postives = 58/79 (73.42%), Query Frame = 0 
Query:    1 MGSQRDWDLVTVMEGSYLDEHAVLVIGKLFGLSSTGIVQEDSRTKRLFNAISSPIEMVLVCPYLGGEDTLELSLIRHPR 79
            MGSQRDWD+VTVM+GSYLDE+A+L+IGKLFGL    IVQED RT RLF+AI++P E  L  P   GE  L    + HP+
Sbjct:   78 MGSQRDWDIVTVMDGSYLDENAILIIGKLFGLPGAQIVQEDERTGRLFDAINAP-EEELGAPRPLGEHLL----LHHPQ 151
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BLAST of mRNA_Ecto-sp13_S_contig57387.16146.1 vs. uniprot
Match: A0A6H5JMG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG0_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.020e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0 
Query:    1 MGSQRDWDLVTVMEGSYLDEHAVLVIGKLFGLSSTGIVQEDSRTKRLFNA 50
            MGSQRDW+ +T++ G +L EHAVL+IGKL GL    I+ ED    +L++A
Sbjct:   58 MGSQRDWEFITMLAGFFLHEHAVLIIGKLLGLPDLQIIHEDIAKIQLYDA 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57387.16146.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPM1_ECTSI2.800e-1960.76PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMG0_9PHAE1.020e-852.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57387contigEcto-sp13_S_contig57387:494..730 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57387.16146.1mRNA_Ecto-sp13_S_contig57387.16146.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig57387 464..730 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig57387.16146.1 ID=prot_Ecto-sp13_S_contig57387.16146.1|Name=mRNA_Ecto-sp13_S_contig57387.16146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MGSQRDWDLVTVMEGSYLDEHAVLVIGKLFGLSSTGIVQEDSRTKRLFNA
ISSPIEMVLVCPYLGGEDTLELSLIRHPR
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