mRNA_Ecto-sp13_S_contig57387.16146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57387.16146.1
Unique NamemRNA_Ecto-sp13_S_contig57387.16146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57387.16146.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 1.290e-22
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 1 
Query:    1 LEKLAKSNADMGSQRDWDLVTVMEGSYLDEHAVLVIGKLFGLSSTGIVQEDSRTKRLFNAISSPIEMVLVCPYLGGEDTLELSLIRHPR 267
            L KLAKS+A MGSQRDWD+VTVM+GSYLDE+A+L+IGKLFGL    IVQED RT RLF+AI++P E  L  P   GE  L    + HP+
Sbjct:   68 LAKLAKSDARMGSQRDWDIVTVMDGSYLDENAILIIGKLFGLPGAQIVQEDERTGRLFDAINAP-EEELGAPRPLGEHLL----LHHPQ 151
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BLAST of mRNA_Ecto-sp13_S_contig57387.16146.1 vs. uniprot
Match: A0A6H5JMG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.810e-10
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    1 LEKLAKSNADMGSQRDWDLVTVMEGSYLDEHAVLVIGKLFGLSSTGIVQEDSRTKRLFNA 180
            + +L +S A+MGSQRDW+ +T++ G +L EHAVL+IGKL GL    I+ ED    +L++A
Sbjct:   48 ITELVQSAANMGSQRDWEFITMLAGFFLHEHAVLIIGKLLGLPDLQIIHEDIAKIQLYDA 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57387.16146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPM1_ECTSI1.290e-2261.80PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMG0_9PHAE2.810e-1048.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57387contigEcto-sp13_S_contig57387:464..730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463794.9722602-UTR-Ecto-sp13_S_contig57387:463..4931681463794.9722602-UTR-Ecto-sp13_S_contig57387:463..493Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig57387 464..493 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463794.9821215-CDS-Ecto-sp13_S_contig57387:493..7301681463794.9821215-CDS-Ecto-sp13_S_contig57387:493..730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57387 494..730 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57387.16146.1prot_Ecto-sp13_S_contig57387.16146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57387 494..730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57387.16146.1

>prot_Ecto-sp13_S_contig57387.16146.1 ID=prot_Ecto-sp13_S_contig57387.16146.1|Name=mRNA_Ecto-sp13_S_contig57387.16146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MGSQRDWDLVTVMEGSYLDEHAVLVIGKLFGLSSTGIVQEDSRTKRLFNA
ISSPIEMVLVCPYLGGEDTLELSLIRHPR
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mRNA from alignment at Ecto-sp13_S_contig57387:464..730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57387.16146.1 ID=mRNA_Ecto-sp13_S_contig57387.16146.1|Name=mRNA_Ecto-sp13_S_contig57387.16146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57387:464..730+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGAGAAGCTGGCCAAGTCGAATGCGGACATGGGCAGCCAGCGCGACTG
GGATCTCGTCACCGTGATGGAAGGGTCCTACCTGGACGAGCACGCCGTCC
TGGTCATCGGGAAACTTTTCGGCCTTTCGAGCACGGGGATCGTCCAAGAG
GATAGCCGGACTAAACGGCTGTTCAACGCAATCTCCTCTCCCATAGAGAT
GGTGTTGGTATGTCCATACTTGGGAGGAGAAGACACGCTTGAACTCTCTC
TGATTAGGCACCCGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57387:464..730+

>mRNA_Ecto-sp13_S_contig57387.16146.1 ID=mRNA_Ecto-sp13_S_contig57387.16146.1|Name=mRNA_Ecto-sp13_S_contig57387.16146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57387:464..730+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAGCCAGCGCGACTGGGATCTCGTCACCGTGATGGAAGGGTCCTA
CCTGGACGAGCACGCCGTCCTGGTCATCGGGAAACTTTTCGGCCTTTCGA
GCACGGGGATCGTCCAAGAGGATAGCCGGACTAAACGGCTGTTCAACGCA
ATCTCCTCTCCCATAGAGATGGTGTTGGTATGTCCATACTTGGGAGGAGA
AGACACGCTTGAACTCTCTCTGATTAGGCACCCGCGG
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