mRNA_Ecto-sp13_S_contig5714.16111.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5714.16111.1
Unique NamemRNA_Ecto-sp13_S_contig5714.16111.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5714.16111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5714contigEcto-sp13_S_contig5714:5079..8015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size324
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.2490902-UTR-Ecto-sp13_S_contig5714:5078..50921681463792.2490902-UTR-Ecto-sp13_S_contig5714:5078..5092Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5714 5079..5092 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463792.2661169-CDS-Ecto-sp13_S_contig5714:5092..51301681463792.2661169-CDS-Ecto-sp13_S_contig5714:5092..5130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5714 5093..5130 +
1681463792.2758718-CDS-Ecto-sp13_S_contig5714:7744..80151681463792.2758718-CDS-Ecto-sp13_S_contig5714:7744..8015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5714 7745..8015 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5714.16111.1prot_Ecto-sp13_S_contig5714.16111.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5714 5093..8015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5714.16111.1

>prot_Ecto-sp13_S_contig5714.16111.1 ID=prot_Ecto-sp13_S_contig5714.16111.1|Name=mRNA_Ecto-sp13_S_contig5714.16111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MEGASGGGGHPGGFCRRHAGLSTSLPQPLLSPRSAVASSVAALSLSPTES
TSSSSLAAAARSNTPAAQQQQQQQQQLSPPLLLQHQQQQLHRRKRSAPAS
TIS
back to top

mRNA from alignment at Ecto-sp13_S_contig5714:5079..8015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5714.16111.1 ID=mRNA_Ecto-sp13_S_contig5714.16111.1|Name=mRNA_Ecto-sp13_S_contig5714.16111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5714:5079..8015+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAGTTGGCCGTGATGGAGGGAGCGAGCGGGGGAGGAGGCCACCCTGGG
GGGTGAGAAAAAGTTGGCCCGCTTTTTTTTTGTTACTTTTTTCCCTCTCT
CTCTCTGTTGTATGCATAAAAGCGCGCGGCATGCATGCATATGCATGGAT
GCAGCATGTAGCAAGTTAGCGCTGCTGCTGGCTGACTGTCTGTTTCAAAT
CCGGAACGCGTTGCATCATGAGTCCGCGCCACAATGAATGATGTTGTTGG
TCGCCCTCTTGGCATCATCATTGATCGGTGTTTTTTGGTGTAGAAGGGAA
ACGGCCGGAGTTTCCACTCACACATATGCATGTGCATATGCATGCGTGCG
TGCGTACGCCGTCGGACCAAAACTAACCTAGCTCCAGAGACAATTTTTTC
TTTGCACTCCAGTTTTGGGCAGTCCTCCCCCAACAACGGCTCTGAGTTGG
GGTCCCTGCGGTTTAGACAGATGAATTCAACCCTAGGTAAGACAGAAGAA
ATTTATCCTCTGTTCCGCTCAAAAAGAGTTGTTCGGCGTGGGTCGGGAGC
GCGCCGCCGCCTGCTCCTCCTCCTCTTCGGGGGTGTACGGAGTAATTTGT
AGTACACATTCATGTTGTGTATGACTAGACGCCGGAATTCCGACATCCGA
AGCGACCGTCAAGAGGCCCGCGTCCGACCAGCTTACTGCAATATGCTCTT
GTTTGTGCCCCCACAGACGCTCGTTTCCTCATTTTATCTTTGCGGGAGGG
CTAATCCAACACCATCAACGACAGACAGGACGAGTTGTTTTCGGACATCA
TTGTTGACTCTGTATTTTCTTTTTTCGCTTATGCTAGTTTTATCTAAGAA
TCGGCAAGAGTCTTCTTTATGAGTACAGGTTTCCTGTATCCAGGTTTGTT
TCATTTTCTGTTTGGGTTCGTTGAACTTCGCTAGGGCTCTTCGGGATTTT
AACACGTCAGCTCTTGGGAAATGTCACAATGGCCAGCTGGCATGCAGGCG
TTGGGTGGTCCTGCTGCCTGCTTTTATTTTCGTCCTGCATCACTCCTCCG
ATGACACTGCTGTGCTCTCATGAGCCAGCCCACTCCGAAGGAACCCCTTG
CGCATATATTTATGTAAAATACGTTTTAGAGTTGAATTATTGACTGAGCT
TGTCGTACGCTCAAAAAAAAAATGCTAAGGGGCGTTATACCTAGACAGTG
GATAGCATTGTTCGCTTCCAAATTTCTAAGTTTCCAAATCCGTCCGTAGA
TCATAGAACCAGGACCTCGATTTGCGGCCGAGGATTTGAATTTTTCGCTT
TGAAATCTGCAAAGTTGCAATTTCTGGAAATTTAGACGCTAAACAGCTGT
GTTTCAAACGGCCCTACTCAGAGTATCCTGAAATCTGTTCTAGACTCACT
TTCGCAACTCCAAATTCCGCGAGAAAACAAAAGGTGACGCGTACCGTCCT
GCTGACTGCTGCATTTATTTGTCGTTGTTGCCTCTGCGTATTCAGCAGTA
CGAACTTTTTATTTCTATTTTCTGAATATGACCCAACGAATCCATTCCTG
TCGAAAAAAAGAGTTTAAGATAGATTATCAACGAGCTCATAGCGTCAAAG
AAGCTACCTGCATTTTCCACTATTTACCGAGCAGCACACGGCAGCAGTAT
CCCCCCTGTGGGTAACAAGCTCAACAAGACAGTTTGGTAGCCGCCTTATG
CATGTCTTTTTTTCTAAAGGGGGCGGGCGTTGCATGCATTGTTTTTTTCG
ACAGAGGCCTCTCTGCGGATTTATTTGGTGCCGACGTCTGTCGCCCGTCG
GACAAAGAAATGTTTGTTTTCTAAAGAAGAAGGCGAGGAGGTCGGTTCGT
TGTCCAGTTCCGATAAAAAAATAGAAGGAAAATTACACGATACGGAGATG
TTGGCCAAGAAGAAGAAAAAGGCTCATCATCAGGTCGCACGTGACAGCAA
TGGCTGGGTTGTTCGGTCGGCAAGTTTGCAGAGCTACCCTCACAAACATG
CATACGTTCTGGCTGTGTTCCGGAGGAAAGAAAAGGAAAACGACAAAAAA
AATAGGAGAAGAAGGACGTGCAAGGAAAGAGGGAAGGACTCCTCTTCGAC
TATCGAACACAAGCACGGCAGATGAAAACGCAGAAAAACCAACTCCCGCA
TCTCCCTTGCTCCTGCCTGAACTTGGGCCGCCAGACATTACTTGAGTGAA
CCGAAAGGTGTGTGGGCGTCTGGAATAATGGGACAGGCAGCAATACCCAC
GCATACTCAACAAGGAGACATGGCCATTCTAAGTAGAGTTTGTAAATGCA
CACACAAATACACACACAAACGGAGATATCACTAATTCTAGAAAGAGTCA
GTAGCACATACAGCATCGAGACATGAACCAACCCCAACGACTCACTACTG
GAGTATTATTCGAGCATCTGAAGTTCTTCTCCAATACCCAATTCCTCCAT
GTAGTCTATTCGACACGATCTGTATCGAAAATGCGGGGGGTTTTCGCGGT
CACAATGAAAAACAACACTGGAAACATTTTGTTGACCGGATCCATGCAAA
CGTTGCGCATGGACAAATAGTATCCATTCCTCACCGACTCTGTCTACCAT
TACCCCGCTGATCCCCCCCGCTACCTTTACCCCGCTGATGCCCCCCCCCC
CCCCCCTCCTCGGCAGGTTCTGCCGGCGCCACGCGGGCCTGTCAACCTCT
CTCCCCCAGCCCTTGCTCTCCCCTCGTTCCGCGGTGGCTTCTTCGGTGGC
CGCCCTATCGCTGTCGCCGACAGAGTCCACTTCCTCGTCCTCTCTCGCCG
CCGCCGCTAGATCCAACACCCCGGCCGCACAGCAGCAGCAGCAGCAGCAG
CAGCAGCTCTCCCCGCCGTTACTACTACAACATCAGCAGCAGCAGCTGCA
TCGCAGGAAACGGTCCGCCCCCGCTTCTACCATCTCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5714:5079..8015+

>mRNA_Ecto-sp13_S_contig5714.16111.1 ID=mRNA_Ecto-sp13_S_contig5714.16111.1|Name=mRNA_Ecto-sp13_S_contig5714.16111.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5714:5079..8015+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGAGCGAGCGGGGGAGGAGGCCACCCTGGGGGGTTCTGCCGGCG
CCACGCGGGCCTGTCAACCTCTCTCCCCCAGCCCTTGCTCTCCCCTCGTT
CCGCGGTGGCTTCTTCGGTGGCCGCCCTATCGCTGTCGCCGACAGAGTCC
ACTTCCTCGTCCTCTCTCGCCGCCGCCGCTAGATCCAACACCCCGGCCGC
ACAGCAGCAGCAGCAGCAGCAGCAGCAGCTCTCCCCGCCGTTACTACTAC
AACATCAGCAGCAGCAGCTGCATCGCAGGAAACGGTCCGCCCCCGCTTCT
ACCATCTCC
back to top