mRNA_Ecto-sp13_S_contig57103.16100.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig57103.16100.1
Unique NamemRNA_Ecto-sp13_S_contig57103.16100.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: D8LDS0_ECTSI (Lactamase_B domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS0_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 1.960e-50
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 
Query:    1 MVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEGGAGP 246
            MVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLK FMGKMGIKNCVELSWWEEVEVEGG GP
Sbjct:  136 MVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKRFMGKMGIKNCVELSWWEEVEVEGGDGP 217
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A7V8G3P9_9BURK (Lactamase_B domain-containing protein n=4 Tax=unclassified Variovorax TaxID=663243 RepID=A0A7V8G3P9_9BURK)

HSP 1 Score: 103 bits (256), Expect = 3.060e-24
Identity = 46/83 (55.42%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:    7 GPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAV----GDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEGGAG 243
            GPKRF+PP L+++ELPR+D+VL+SHNHYDHLD  SVKA+    G  PL+VVP G+  ++ + GI N VEL WW+ +E+  G G
Sbjct:  143 GPKRFQPPGLALAELPRVDLVLISHNHYDHLDEASVKALAAQAGGSPLFVVPLGIAPWLAERGIANAVELDWWDSLELPAGTG 225
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A1Y1XX77_9FUNG (Metallo-hydrolase/oxidoreductase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1XX77_9FUNG)

HSP 1 Score: 102 bits (253), Expect = 5.310e-24
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1 
Query:    4 VGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEV 228
            VGPKR+ PP   + ELP+ID+V++SHNHYDHLD  +VKA+GDGP + VP G K +   +GI+N VE  WW+E EV
Sbjct:  127 VGPKRYTPPPCKIEELPKIDIVVISHNHYDHLDYNTVKALGDGPRYFVPLGNKKWFESVGIRNVVECDWWDETEV 201
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A836CLM8_9STRA (Beta-lactamase superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM8_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.280e-23
Identity = 43/72 (59.72%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    7 GPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEV 222
            GPKR+ PPA+ VSELP +D VLLSHNHYDHL   +V+ +G+ PLW+VP G+K +M   GI +CVE+SWW+ V
Sbjct:  138 GPKRYTPPAMRVSELPPLDFVLLSHNHYDHLCYETVQEIGNAPLWIVPKGVKRWMRGAGIDHCVEMSWWDHV 209
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A2V1H1A9_9GAMM (MBL fold metallo-hydrolase n=2 Tax=Pelagibaculum spongiae TaxID=2080658 RepID=A0A2V1H1A9_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 3.050e-23
Identity = 42/76 (55.26%), Postives = 55/76 (72.37%), Query Frame = 1 
Query:    7 GPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEG 234
            GPKR+ P A+ + +LP ID+V++SHNHYDHLD  +VKA+GD PLW+VP GLK +   +GI N  EL WW E   +G
Sbjct:  129 GPKRYTPVAIKLEDLPEIDLVVISHNHYDHLDKDTVKALGDKPLWLVPLGLKSWFTSLGIDNVQELDWWSEYRFKG 204
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A383D783_9ZZZZ (Lactamase_B domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A383D783_9ZZZZ)

HSP 1 Score: 96.7 bits (239), Expect = 7.140e-23
Identity = 41/76 (53.95%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:    7 GPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEG 234
            GPKRF PPA+S+  LPRID+ ++SHNHYDHLD  SVKA+G+   WV P G + +   +GI    EL WWE   +EG
Sbjct:   33 GPKRFTPPAMSIEALPRIDIAVISHNHYDHLDRESVKALGNSVHWVAPLGHRTWFEDLGITRLTELDWWESASIEG 108
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A2P1VHU0_9BURK (MBL fold metallo-hydrolase n=6 Tax=Variovorax TaxID=34072 RepID=A0A2P1VHU0_9BURK)

HSP 1 Score: 98.6 bits (244), Expect = 1.360e-22
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    4 VGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAV----GDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEV 222
            VGPKRF+PP +++ +LPRID+VL+SHNHYDHLD  SVKA+    G  PL+VVP G+K ++ + G+ N VEL WW+ V
Sbjct:  133 VGPKRFQPPGVALKDLPRIDLVLISHNHYDHLDEDSVKALNAQAGGPPLFVVPLGIKPWLAERGVTNAVELDWWDSV 209
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A4Q7VVS3_9BURK (N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D n=1 Tax=Rivibacter subsaxonicus TaxID=457575 RepID=A0A4Q7VVS3_9BURK)

HSP 1 Score: 98.2 bits (243), Expect = 1.770e-22
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:    4 VGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAV----GDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEGGAG 243
            +GP R +PPAL+ +ELP IDVVL+SHNHYDHLD  SV A+    G  PL++VP GLK ++  +GI N VEL WW+  +V GG G
Sbjct:  145 IGPLRAQPPALAAAELPHIDVVLISHNHYDHLDEASVVALNAQAGGPPLFIVPLGLKAWLAGVGIANAVELDWWDGHKVPGGQG 228
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A8B8B126_CRAVI (N-acetylphosphatidylethanolamine-hydrolyzing phospholipase D n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8B126_CRAVI)

HSP 1 Score: 97.1 bits (240), Expect = 2.840e-22
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1 
Query:    4 VGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVG----DGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEGGAG 243
            +GPKR+RPP   +++LP ID +++SHNHYDHLD GSVK++     D   W V SG K +M   G KN VELSWWEE E+ G  G
Sbjct:  109 MGPKRYRPPPCKINDLPHIDAIIISHNHYDHLDHGSVKSLNSKYDDKITWFVASGTKEWMINAGCKNVVELSWWEEAELPGKPG 192
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BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Match: A0A679JC20_VARPD (Lactamase_B domain-containing protein n=1 Tax=Variovorax paradoxus TaxID=34073 RepID=A0A679JC20_VARPD)

HSP 1 Score: 97.1 bits (240), Expect = 5.650e-22
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    7 GPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAV----GDGPLWVVPSGLKGFMGKMGIKNCVELSWWEEVEVEGGAG 243
            GPKRF+PP +++ +LP ID+VL+SHNHYDHLD GSVKA+    G  PL+VVP G+  ++ + GI N VEL WW+ + +    G
Sbjct:  138 GPKRFQPPGIALKDLPHIDLVLISHNHYDHLDEGSVKALNAQAGGPPLFVVPLGIAPWLAERGIANAVELDWWDSITLPSSTG 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig57103.16100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDS0_ECTSI1.960e-5097.56Lactamase_B domain-containing protein n=1 Tax=Ecto... [more]
A0A7V8G3P9_9BURK3.060e-2455.42Lactamase_B domain-containing protein n=4 Tax=uncl... [more]
A0A1Y1XX77_9FUNG5.310e-2457.33Metallo-hydrolase/oxidoreductase n=1 Tax=Basidiobo... [more]
A0A836CLM8_9STRA1.280e-2359.72Beta-lactamase superfamily domain-containing prote... [more]
A0A2V1H1A9_9GAMM3.050e-2355.26MBL fold metallo-hydrolase n=2 Tax=Pelagibaculum s... [more]
A0A383D783_9ZZZZ7.140e-2353.95Lactamase_B domain-containing protein (Fragment) n... [more]
A0A2P1VHU0_9BURK1.360e-2257.14MBL fold metallo-hydrolase n=6 Tax=Variovorax TaxI... [more]
A0A4Q7VVS3_9BURK1.770e-2255.95N-acyl-phosphatidylethanolamine-hydrolysing phosph... [more]
A0A8B8B126_CRAVI2.840e-2253.57N-acetylphosphatidylethanolamine-hydrolyzing phosp... [more]
A0A679JC20_VARPD5.650e-2251.81Lactamase_B domain-containing protein n=1 Tax=Vari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig57103contigEcto-sp13_S_contig57103:27..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score170.6
Seed ortholog evalue3e-40
Seed eggNOG ortholog2880.D8LDS0
Preferred nameNAPEPLD
Model size248
KEGG koko:K13985
KEGG Pathwayko04723,map04723
Hectar predicted targeting categoryother localisation
GOsGO:0001523,GO:0001659,GO:0001750,GO:0003674,GO:0003824,GO:0004620,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005768,GO:0005769,GO:0005794,GO:0005829,GO:0005886,GO:0005929,GO:0006066,GO:0006576,GO:0006629,GO:0006644,GO:0006650,GO:0006720,GO:0006721,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007568,GO:0008081,GO:0008150,GO:0008152,GO:0008270,GO:0009308,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016101,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0019866,GO:0031090,GO:0031224,GO:0031253,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031347,GO:0031349,GO:0031410,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032592,GO:0034308,GO:0034641,GO:0035900,GO:0036477,GO:0042439,GO:0042578,GO:0042592,GO:0042622,GO:0042802,GO:0042995,GO:0043005,GO:0043025,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044106,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044441,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044463,GO:0044464,GO:0045595,GO:0045597,GO:0045598,GO:0045600,GO:0046337,GO:0046486,GO:0046872,GO:0046914,GO:0048518,GO:0048519,GO:0048521,GO:0048522,GO:0048583,GO:0048584,GO:0048871,GO:0050727,GO:0050729,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0060170,GO:0060259,GO:0065007,GO:0065008,GO:0070013,GO:0070290,GO:0070291,GO:0070292,GO:0071704,GO:0071944,GO:0080134,GO:0090335,GO:0090336,GO:0097458,GO:0097708,GO:0097730,GO:0097731,GO:0097733,GO:0098573,GO:0098588,GO:0098590,GO:0120025,GO:0120038,GO:1901564,GO:1901615,GO:1903998,GO:1903999,GO:2000252
Exons2
EggNOG free text desc.N-acetylphosphatidylethanolamine-hydrolysing phospholipas activity
EggNOG OGsCOG2220@1,KOG3798@2759
EC3.1.4.54
Cds size246
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463791.5974011-CDS-Ecto-sp13_S_contig57103:26..1901681463791.5974011-CDS-Ecto-sp13_S_contig57103:26..190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57103 27..190 +
1681463791.6143398-CDS-Ecto-sp13_S_contig57103:756..8381681463791.6143398-CDS-Ecto-sp13_S_contig57103:756..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig57103 757..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig57103.16100.1prot_Ecto-sp13_S_contig57103.16100.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig57103 27..838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig57103.16100.1

>prot_Ecto-sp13_S_contig57103.16100.1 ID=prot_Ecto-sp13_S_contig57103.16100.1|Name=mRNA_Ecto-sp13_S_contig57103.16100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MVGPKRFRPPALSVSELPRIDVVLLSHNHYDHLDTGSVKAVGDGPLWVVP
SGLKGFMGKMGIKNCVELSWWEEVEVEGGAGP
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mRNA from alignment at Ecto-sp13_S_contig57103:27..838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig57103.16100.1 ID=mRNA_Ecto-sp13_S_contig57103.16100.1|Name=mRNA_Ecto-sp13_S_contig57103.16100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=812bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57103:27..838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGTCCGAAGCGGTTCAGGCCTCCAGCCCTGTCCGTGTCCGAGTT
GCCCCGCATCGACGTGGTGCTACTGAGCCACAACCACTACGACCACCTGG
ATACGGGGTCGGTGAAGGCGGTAGGGGATGGCCCGCTGTGGGTGGTACCG
TCGGGCTTGAAAGGGTGAGAAGGGTGGAGGGAAGACTGAGAAAGGGGAGA
GAGAGCAGGGGGCGGGGGGGCAGGCAGAGAAGGGGAGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGAGAAGGAGAGACAGAGAGAGAAGACGACG
CCCCTTCGGTACAGTAGTCCCACGCCCTCAAAACACATTTATACGGCAGC
AATCTTGTACATCACTAGTGGATCTGGTGGGGTTGGGGGGGGGGGTTTCT
TGCGTCTCCTGCGGCACTTGGAAGAGAGCGACTGAGGCGCAGTCAATCCT
ATGGCGTCGGCTTGACTTTGTTTCGGCCTCGGACCATCACGGGCGGCCTC
CCGAGTCTACACCATAGACGCCACTACCATCACCGTCATTGTAGATCTGG
ACACGCGCACCCGGTCGACACGAGCACAACTGACAGGCGTGGACACATTG
GCTGCCCCAAGCACGTCAGCACCCCCACTCCCATCCCCATCCCCAACAAC
AAAAACAACAACACCCTTCGTTGAACTTCCGGTGTTTTGTTTACGGACTG
TTGTGTGGCCCCCGTTGGCCGTATGCATAGGTTCATGGGCAAGATGGGCA
TCAAGAACTGCGTGGAGCTGTCCTGGTGGGAAGAGGTGGAGGTGGAGGGT
GGAGCCGGTCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig57103:27..838+

>mRNA_Ecto-sp13_S_contig57103.16100.1 ID=mRNA_Ecto-sp13_S_contig57103.16100.1|Name=mRNA_Ecto-sp13_S_contig57103.16100.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig57103:27..838+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGGTCCGAAGCGGTTCAGGCCTCCAGCCCTGTCCGTGTCCGAGTT
GCCCCGCATCGACGTGGTGCTACTGAGCCACAACCACTACGACCACCTGG
ATACGGGGTCGGTGAAGGCGGTAGGGGATGGCCCGCTGTGGGTGGTACCG
TCGGGCTTGAAAGGGTTCATGGGCAAGATGGGCATCAAGAACTGCGTGGA
GCTGTCCTGGTGGGAAGAGGTGGAGGTGGAGGGTGGAGCCGGTCCA
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