mRNA_Ecto-sp13_S_contig5710.16098.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5710.16098.1
Unique NamemRNA_Ecto-sp13_S_contig5710.16098.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5710.16098.1 vs. uniprot
Match: D7FLM8_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM8_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 4.590e-47
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:   97 MTAEAWNRHSTKGWRRGQLESLKLMSKSQAALLRAYAVDRIHERDSLVEAALAFVVSTAETPSNIEGSGSTSANDENVYDAKAVQELLEWRERLG 381
            MTAE WNRHST+GWRRGQLESLKLMSKSQAALLRAYAVDRIHERDSLVEAALAFVVSTAET S+I GSGSTSANDEN YDAKAVQELLEWRERLG
Sbjct:    1 MTAEGWNRHSTEGWRRGQLESLKLMSKSQAALLRAYAVDRIHERDSLVEAALAFVVSTAETTSSIGGSGSTSANDENGYDAKAVQELLEWRERLG 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5710.16098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLM8_ECTSI4.590e-4793.68Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5710contigEcto-sp13_S_contig5710:4534..5358 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score174.1
Seed ortholog evalue4.2e-41
Seed eggNOG ortholog2880.D7FLM8
Model size383
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
Ec32 ortholog descriptionKinesin-like protein
Ec32 orthologEc-17_000550.3
Cds size381
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463791.4746988-CDS-Ecto-sp13_S_contig5710:4533..47311681463791.4746988-CDS-Ecto-sp13_S_contig5710:4533..4731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5710 4534..4731 -
1681463791.4904685-CDS-Ecto-sp13_S_contig5710:5175..53581681463791.4904685-CDS-Ecto-sp13_S_contig5710:5175..5358Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5710 5176..5358 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5710.16098.1prot_Ecto-sp13_S_contig5710.16098.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5710 4534..5358 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5710.16098.1

>prot_Ecto-sp13_S_contig5710.16098.1 ID=prot_Ecto-sp13_S_contig5710.16098.1|Name=mRNA_Ecto-sp13_S_contig5710.16098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
LRRRRKIEDTSQNFLLLVTGHASVPVGHVVLAMTAEAWNRHSTKGWRRGQ
LESLKLMSKSQAALLRAYAVDRIHERDSLVEAALAFVVSTAETPSNIEGS
GSTSANDENVYDAKAVQELLEWRERLG
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mRNA from alignment at Ecto-sp13_S_contig5710:4534..5358-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5710.16098.1 ID=mRNA_Ecto-sp13_S_contig5710.16098.1|Name=mRNA_Ecto-sp13_S_contig5710.16098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5710:4534..5358- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACGACGTAGACGAAAGATTGAAGACACAAGCCAGAACTTTCTCCTGTT
GGTCACAGGGCACGCCTCAGTACCAGTGGGGCACGTAGTATTAGCAATGA
CCGCCGAGGCTTGGAATCGCCATTCCACAAAGGGCTGGCGTCGAGGGCAG
CTGGAGAGTCTAAAGCTCATGAGCAAGAGCCAGGTGAGCGAGGCGGTATG
CTGCACCGTATGTATGGAGTACCGGTATCCTGGTGTTTTCCGATACAAGC
GGACGAGAGAGTTGCAGTGGTACACATCATTCCACCTGCAACACCTGCCA
CCATGGCGTGGCGTGCTTTTGGTGGAGGAGTGCTTGCACATGGATACTGC
AAGAATTGTAGGCAATAGAACATCTTGCACCATTCGTCGGCACTACTGTA
CAGCAGTCCGTCCAGACTAGATATGCATGTAAAGACTCCAGACTCCGAGC
GGGGTATAATCTACACGGTATGGTACCCATCATACACGCAATGACTTGAT
GTTCCCAGGCTCGAAAGACTTATGAGATTGCTACCGCCTGTAGGGGAGTG
GGATACGATGACAAGATTTTTCGGTCACCCTATGCTTGCGGTCGCGATCA
ACCTGCTGTCGGCGCGACACGCTTCAGGCAGCGTTACTTCGCGCGTACGC
TGTCGATCGGATTCACGAGAGAGACTCGCTAGTAGAGGCAGCCCTGGCTT
TCGTCGTCAGCACCGCGGAAACGCCGAGCAACATCGAAGGCAGTGGATCG
ACAAGCGCAAATGACGAGAACGTATACGATGCGAAAGCAGTTCAGGAACT
GCTGGAGTGGCGAGAAAGGCTCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5710:4534..5358-

>mRNA_Ecto-sp13_S_contig5710.16098.1 ID=mRNA_Ecto-sp13_S_contig5710.16098.1|Name=mRNA_Ecto-sp13_S_contig5710.16098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5710:4534..5358- (Ectocarpus species13 EcNAP12_S_4_19m)
CTACGACGTAGACGAAAGATTGAAGACACAAGCCAGAACTTTCTCCTGTT
GGTCACAGGGCACGCCTCAGTACCAGTGGGGCACGTAGTATTAGCAATGA
CCGCCGAGGCTTGGAATCGCCATTCCACAAAGGGCTGGCGTCGAGGGCAG
CTGGAGAGTCTAAAGCTCATGAGCAAGAGCCAGGCAGCGTTACTTCGCGC
GTACGCTGTCGATCGGATTCACGAGAGAGACTCGCTAGTAGAGGCAGCCC
TGGCTTTCGTCGTCAGCACCGCGGAAACGCCGAGCAACATCGAAGGCAGT
GGATCGACAAGCGCAAATGACGAGAACGTATACGATGCGAAAGCAGTTCA
GGAACTGCTGGAGTGGCGAGAAAGGCTCGGG
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