mRNA_Ecto-sp13_S_contig5709.16093.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5709.16093.1
Unique NamemRNA_Ecto-sp13_S_contig5709.16093.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 4.480e-24
Identity = 64/124 (51.61%), Postives = 80/124 (64.52%), Query Frame = 3 
Query:   18 MSGGRPWRMKTRPSLQSWCCLGLVECPSGLSELFKSASLRWRSISVLEKEVPPSAPASSLLPSPPTARGRTGNSCLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVDARI 389
            M+G RPWR  TR +        LV   SG SE   + S+    +S+LEKE   SAPA   +P  PT  G + +SCL AL +ALN+TC+GESWYTSTKELQL SL+ C+ACR    +HLKVDA+I
Sbjct:   47 MNGARPWRAATRLAQ-------LVLVWSG-SEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPGPSRSSCLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQI 162
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.470e-19
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 3 
Query:  129 SLRWRSISVLEKEVPPSAPASSLLPSPPTARGRTGNSCLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVDA 383
            SL    + +LE+E   S P SS L SP    G T +SCLK LTVALN+TCDG+SWYTSTKELQL SL++CMACR    +HL VDA
Sbjct:   99 SLLRECVLLLEEEAAFSVPDSSPLQSPSCTLGPTRSSCLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDA 183
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 8.890e-18
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 3 
Query:  120 KSASLRWRSISVLEKEVPPSAPASSLLPSPPTARGRTGNSCLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVDARI 389
            ++ S+    +S+LEKE   SA  SS L    TA G   +SCL A+ VAL++TCDG+SWYTSTKELQL SL  C ACR    VHLKVD  I
Sbjct:   96 RALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKSWYTSTKELQLASLGFCTACRNHQTVHLKVDEHI 185
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 1.710e-14
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  219 RGRTGNSCLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVDARI 389
            +G T   CL+AL VALN+TCDG+SWYTSTKELQL SL  C+ACR    VHL VD +I
Sbjct:   44 KGPTRKFCLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQI 100
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.380e-14
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 3 
Query:  222 GRTGNSCLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVDARI 389
            G T N CL +L VALN+TCDG SWYTSTKELQ  SL+ C+ACR    +HLKVD +I
Sbjct:    8 GLTHNPCLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQI 63
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.480e-12
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:   20 EWGPAVANEDATKLAELVLPWSG*MPERAL*TLQKCISALEKHLCAGEGGSA 175
            EWGPAVA+ DATKLAELVL WSG  PERAL  ++ C+S LEK +     GS+
Sbjct:   14 EWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSS 65
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.050e-9
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 3 
Query:  240 CLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVD 380
            CL+A  VALN +CDG  WYTSTKELQL SL+ C+ CR    +HL V+
Sbjct:    7 CLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVN 53
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-6
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 3 
Query:  231 GNSCLKALTVALNKTCDGES--WYTSTKELQLTSLKICMACRTASHVHLKV 377
            G S L  L VALN+ CDG+   WY ST ELQL SL++C ACR+A  +H+ V
Sbjct:   86 GGSSLDTLIVALNQACDGQEKRWYVSTLELQLVSLELCGACRSAQLLHVFV 136
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BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Match: A0A6H5JA08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA08_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 3.680e-5
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 3 
Query:  240 CLKALTVALNKTCDGESWYTSTKELQLTSLKICMACRTASHVHLKVD 380
            CL AL +ALN+   GE WYTST +LQLTSL++C ACR+   + L V 
Sbjct:   43 CLDALIIALNQASGGE-WYTSTMQLQLTSLELCAACRSMHLLKLNVQ 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5709.16093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G2S9_ECTSI4.480e-2451.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE1.470e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUL5_ECTSI8.890e-1854.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRF9_9PHAE1.710e-1464.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH81_ECTSI2.380e-1464.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FH80_ECTSI2.480e-1261.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXS2_ECTSI1.050e-959.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FTK8_ECTSI2.710e-654.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA08_9PHAE3.680e-555.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5709contigEcto-sp13_S_contig5709:3938..6710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size389
Hectar predicted targeting categoryother localisation
Exons2
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.9410152-CDS-Ecto-sp13_S_contig5709:3937..41041681463790.9410152-CDS-Ecto-sp13_S_contig5709:3937..4104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5709 3938..4104 -
1681463790.952029-CDS-Ecto-sp13_S_contig5709:6488..66931681463790.952029-CDS-Ecto-sp13_S_contig5709:6488..6693Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5709 6489..6693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.9632215-UTR-Ecto-sp13_S_contig5709:6693..67101681463790.9632215-UTR-Ecto-sp13_S_contig5709:6693..6710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5709 6694..6710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5709.16093.1prot_Ecto-sp13_S_contig5709.16093.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5709 3938..6693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5709.16093.1

>prot_Ecto-sp13_S_contig5709.16093.1 ID=prot_Ecto-sp13_S_contig5709.16093.1|Name=mRNA_Ecto-sp13_S_contig5709.16093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
MSGGRPWRMKTRPSLQSWCCLGLVECPSGLSELFKSASLRWRSISVLEKE
VPPSAPASSLLPSPPTARGRTGNSCLKALTVALNKTCDGESWYTSTKELQ
LTSLKICMACRTASHVHLKVDARI
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mRNA from alignment at Ecto-sp13_S_contig5709:3938..6710-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5709.16093.1 ID=mRNA_Ecto-sp13_S_contig5709.16093.1|Name=mRNA_Ecto-sp13_S_contig5709.16093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5709:3938..6710- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTTGACCTTTAGGTACATGAGTGGGGGCCGGCCGTGGCGAATGAAGACG
CGACCAAGCTTGCAGAGCTGGTGCTGCCTTGGTCTGGTTGAATGCCCGAG
CGGGCTCTCTGAACTCTTCAAAAGTGCATCTCTGCGCTGGAGAAGCATCT
CTGTGCTGGAGAAGGAGGTTCCGCCGTCAGCCCCGGCTTCTTCTCTCCTT
CCTTCGCCTCCGACTGCGCGTGGTGAGTGCCGTGTTGATACCGAGAGTTC
GTGAATTGCCTCAACTCTGGCCGAGTTGAGGAGACCCCGCAAGGTTTTTG
TGAACGTTGTATCTTACTTCCAGGTTGGCGGTGTGTGTTTTATCGTCTCG
TCTGTTTCAAGTCGATCAAGACGCAACGGCCGCTTGGTCCAAAGAGTGTA
CCACATCGCGTTGAAAACCGAGATGTGCACGATCGTAGACGGATTCACCC
CAACCGTTATCGACGCAACGCTGCAGGCGGATAAAAACGTCGAGCGCCGG
CCTAGAAACCAAAATTTTTAGGCCTTCCCCACGTTCGTGTGCATAGGGAG
ATACAAAATGCGTTCCATTGCCATCCCAAGGGATAAAATTAACATCACTC
CTACAGCGGATGGCAATCATGCTAATACTCACATCAAAAACTCGCCGTGT
CTTTCTACACAAACATGTCTGTTTCGGGTGCCAGCTGAGTAAGTGCAGGG
TGATTCCATCAAGAGATGAAAGACGAGTTACTTGACGTGGCCTCATCAAA
TGTTTGACCTCGATGCGTCGACTGTGGAGTCCGGGTTGGAACATACTTTG
TTTGTCGGAAACACGACGAATGATACGCGTCTGTCAAGGCCACGGCTAAA
ATTGTTTAATTTTCCGCGAAAGTAGTCTTGTTTTATCCGCTGTTGGCACC
CATGGCGTCGGCACGATGTTAGTGTTGGGCGTGTTTTGTGTTTCTCTCGC
TTGACCGTGTGAAGTGTATTCTCCTGTTGGTGTGTGCCACCTTGTAGTCA
ACGGTAGTCTGTAACTTCCAACACATCATTTTTTGCGCGAAATGCCATGC
ATTCATGTTGTAACCATGAAACATTGTGGAAGAACGGCTCTCTGGTTGCG
TGCAGGAATCGCCGCCCACACACCCCACATGCAGCAAAGCCCACGGGTAT
ATGTGTACTTTGTCCTGATCACCAACCATGACACGAAGGGAAAGGAATTT
CTACCCAACAGCACGAACCCGTAACCGGAAATTCCTCCTCGTGTTCGGAC
TATCGTGGAACAAGTTGATTTTTTATGCACACGAGGTGACCGTTATTTCG
AGACTTGAACGGTCAAACTCTCGCCAGTCGTCCTCGAGCAATGGTGTTAC
AATTAGTAGACATTCAAGCATGTGCATCGTACATGAAGAGTGTCGAGTGA
GCATTGTTAACATCTCAACTTGATTGTGTGAAGCGCACCCTCGATTCTTT
GGTGTCTTTTTATCTAGTCCGCGTTTGTGTCTGGTCGGGAAATAAGCGAG
GTTTGCGCCCGCTCCGTTTATTTCCGCCTGGTATCCCGTACGACCTGAAA
ATGCATTTATGTACCCTGCTCTTGAATGGGTAGAGTAGCGAGCTTACGGG
CGTCAGTGCGGCAAGAGCTAGTCGCACATAATCTTCTCCAAACCTCCGAT
GTTGTTCGCATCTAGAGCTCCACGTCATATTCTATTAAGATTTGAAGGCA
GCAGCGAATACATCTATTTGGTGTCAATCTTGAACCTCGGATATCCAGAT
GTTGAACTGATGGTTGTGGCTCTGATCTCTCGATACTTCTCTCCTTTGGT
GACGCGGTGACAGCGGTTGGTTAGACTCTCTCGTTTTTTCCTTAGTTCCA
GCACAAAGAGGAGCGACAGAAAAGAGCGGTTCCGGGGGCCTCTATAACAA
GGTTTAGCGGCACCACACCCTGCATGGACTACTTGCGGTTAACGTACCTG
GTAGTTGTTACGAACGGTGTTCGGCCTCAAGGCTCGCCTTAGAAAATGGC
CAGAGCTCTAGCTGCACTGCTTTTGTCTTCGTGCGTCTTTTTTTGTTGTG
TGGGCTGCGTGACATCACAATCATTCCACACCTACTGAGGCTGCCGCTGG
TCCTACTGCAGCATCCCGTTGATCAACAAGGGCGCCAATATTCTAGGTAT
TTCATCCAGTAATTGTTTTCATGTGGGCTGTGCTTTGTTGAGCTCTACAA
GGATATGAAAATATTTGAAGCGAGATGTTGCTGGGTTCAAATGAATATGA
AGTCTCTTCTGCTCCTCTCCGCTGTCTCATGATAAAATTTTGTTTCGCCG
AGAGGGATGCGGAGCACCAGCAGTAATTTTCCCTCAGCAGTATCACTACT
GCTGTAGCGTACGGCCACCAGGACGAGTGAGCAAGAGACGCAGCAAACAA
ATGCATATCGGAGGATTTGAGGTTGCCCTGACCGGGCGATTTTTAAGGTT
TCAAGGAATTGCAGGCAATGTGCCGTCTCCTATTGGGTGTATCGTGGTCT
TTGACCAATTCCGGATTCTTTATTGGCCGGACTGAAACTTTTGGCAACTC
GTCATTTGCCCGCCTTCACTCGTGCATTCGTTCAAACACGATTGTCTCTT
CCTCAGGACGCACTGGTAACTCATGCTTGAAAGCCCTCACCGTTGCTCTG
AACAAGACGTGCGACGGGGAGAGTTGGTACACGTCGACGAAGGAGCTGCA
GCTGACGTCCCTGAAGATATGCATGGCGTGCAGAACTGCTAGCCACGTGC
ACTTGAAAGTTGACGCACGAATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5709:3938..6710-

>mRNA_Ecto-sp13_S_contig5709.16093.1 ID=mRNA_Ecto-sp13_S_contig5709.16093.1|Name=mRNA_Ecto-sp13_S_contig5709.16093.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5709:3938..6710- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGTGGGGGCCGGCCGTGGCGAATGAAGACGCGACCAAGCTTGCAGAG
CTGGTGCTGCCTTGGTCTGGTTGAATGCCCGAGCGGGCTCTCTGAACTCT
TCAAAAGTGCATCTCTGCGCTGGAGAAGCATCTCTGTGCTGGAGAAGGAG
GTTCCGCCGTCAGCCCCGGCTTCTTCTCTCCTTCCTTCGCCTCCGACTGC
GCGTGGACGCACTGGTAACTCATGCTTGAAAGCCCTCACCGTTGCTCTGA
ACAAGACGTGCGACGGGGAGAGTTGGTACACGTCGACGAAGGAGCTGCAG
CTGACGTCCCTGAAGATATGCATGGCGTGCAGAACTGCTAGCCACGTGCA
CTTGAAAGTTGACGCACGAATT
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