mRNA_Ecto-sp13_S_contig5708.16091.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5708.16091.1
Unique NamemRNA_Ecto-sp13_S_contig5708.16091.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5708.16091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5708contigEcto-sp13_S_contig5708:4429..5224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size796
Hectar predicted targeting categoryother localisation
Exons1
Cds size465
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.8634298-UTR-Ecto-sp13_S_contig5708:4428..46261681463790.8634298-UTR-Ecto-sp13_S_contig5708:4428..4626Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5708 4429..4626 +
1681463790.8832617-UTR-Ecto-sp13_S_contig5708:5091..52241681463790.8832617-UTR-Ecto-sp13_S_contig5708:5091..5224Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5708 5092..5224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.8741658-CDS-Ecto-sp13_S_contig5708:4626..50911681463790.8741658-CDS-Ecto-sp13_S_contig5708:4626..5091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5708 4627..5091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5708.16091.1prot_Ecto-sp13_S_contig5708.16091.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5708 4627..5091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5708.16091.1

>prot_Ecto-sp13_S_contig5708.16091.1 ID=prot_Ecto-sp13_S_contig5708.16091.1|Name=mRNA_Ecto-sp13_S_contig5708.16091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MGGDPPRERLHVCRRSGWTLIRPRVLSTGGHTCTANLPWHACMRMHAYLY
LPYVPSVTSCTSTRINNASCVCLYSTRTRYAFLESQHSKKKRHGKTNNLP
SVDPLTAEIHLLHLYRLYTRQFPPPITADIAKPKHRRNKKERERPKRSQR
PVSS*
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mRNA from alignment at Ecto-sp13_S_contig5708:4429..5224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5708.16091.1 ID=mRNA_Ecto-sp13_S_contig5708.16091.1|Name=mRNA_Ecto-sp13_S_contig5708.16091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=796bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5708:4429..5224+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCTTCTTGTGTTCTTAGAATATTTTTCACCGGCAAAAATATTAGGAA
ACATAAAAATACAAAAACAGAAAGATATAATCGCCATTTTCGAATCCAAA
ATAATTCCCGAAAGAACACCACTGCTGCCACCGTCGTCGTCAAACAAGGC
TGAGATCTTTTTATTTTTAAAGGAATCTGCGTGCTTGATGGTGTGCTAAT
GGGAGGTGATCCTCCACGCGAAAGGCTACATGTGTGTAGGAGGAGTGGAT
GGACACTCATACGGCCGCGAGTCCTTTCGACAGGAGGACATACATGCACA
GCAAATCTCCCATGGCATGCATGCATGCGTATGCATGCATACTTGTATCT
GCCGTACGTACCATCGGTCACCTCTTGCACTAGTACTCGGATCAACAACG
CTTCTTGCGTTTGTTTGTATTCAACCCGTACCCGGTATGCATTCCTTGAG
TCACAACATTCGAAGAAAAAAAGACATGGAAAAACAAACAACCTTCCTTC
CGTCGATCCTCTTACAGCAGAAATCCATCTACTACATTTGTACCGACTTT
ACACCCGTCAATTTCCTCCTCCAATAACAGCAGACATTGCCAAGCCGAAG
CACCGACGAAATAAAAAAGAGAGAGAGCGCCCGAAACGCTCGCAACGCCC
GGTGTCTAGCTGAAGCAATTGGCCTGATTGTGGAGACCACGCCTAGGCAC
GGCAAGAACAGTATGTAACACAGCTGAAACTTACGGGCGGTGAGACAAGA
ACACAAAGCGCTCTCCCTACACCGGATAGACATCTGTGCGTGTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5708:4429..5224+

>mRNA_Ecto-sp13_S_contig5708.16091.1 ID=mRNA_Ecto-sp13_S_contig5708.16091.1|Name=mRNA_Ecto-sp13_S_contig5708.16091.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5708:4429..5224+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGTGATCCTCCACGCGAAAGGCTACATGTGTGTAGGAGGAGTGG
ATGGACACTCATACGGCCGCGAGTCCTTTCGACAGGAGGACATACATGCA
CAGCAAATCTCCCATGGCATGCATGCATGCGTATGCATGCATACTTGTAT
CTGCCGTACGTACCATCGGTCACCTCTTGCACTAGTACTCGGATCAACAA
CGCTTCTTGCGTTTGTTTGTATTCAACCCGTACCCGGTATGCATTCCTTG
AGTCACAACATTCGAAGAAAAAAAGACATGGAAAAACAAACAACCTTCCT
TCCGTCGATCCTCTTACAGCAGAAATCCATCTACTACATTTGTACCGACT
TTACACCCGTCAATTTCCTCCTCCAATAACAGCAGACATTGCCAAGCCGA
AGCACCGACGAAATAAAAAAGAGAGAGAGCGCCCGAAACGCTCGCAACGC
CCGGTGTCTAGCTGA
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