mRNA_Ecto-sp13_S_contig5703.16084.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5703.16084.1
Unique NamemRNA_Ecto-sp13_S_contig5703.16084.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5703.16084.1 vs. uniprot
Match: A0A6H5JZ95_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ95_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.730e-17
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 2 
Query:    2 RTARVVKAMETTDRGFYTPQDAYEDRQEGGAREINDWLEACGP 130
            R+ARVVKAME TDRGFYTPQDAYEDRQEGGAREIND LEAC P
Sbjct:   66 RSARVVKAMEATDRGFYTPQDAYEDRQEGGAREINDGLEACRP 108
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BLAST of mRNA_Ecto-sp13_S_contig5703.16084.1 vs. uniprot
Match: D7FPW4_ECTSI (Protein-L-isoaspartate (D-aspartate) O-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPW4_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.870e-7
Identity = 25/28 (89.29%), Postives = 27/28 (96.43%), Query Frame = 2 
Query:    2 RTARVVKAMETTDRGFYTPQDAYEDRQE 85
            R+ARVVKAMETTDRGFYTPQDAYEDR +
Sbjct:  126 RSARVVKAMETTDRGFYTPQDAYEDRPQ 153
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5703.16084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ95_9PHAE5.730e-1790.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPW4_ECTSI5.870e-789.29Protein-L-isoaspartate (D-aspartate) O-methyltrans... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5703contigEcto-sp13_S_contig5703:671..958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size271
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size108
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.4343867-UTR-Ecto-sp13_S_contig5703:670..7501681463790.4343867-UTR-Ecto-sp13_S_contig5703:670..750Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5703 671..750 -
1681463790.461412-UTR-Ecto-sp13_S_contig5703:767..8251681463790.461412-UTR-Ecto-sp13_S_contig5703:767..825Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5703 768..825 -
1681463790.4928792-UTR-Ecto-sp13_S_contig5703:933..9581681463790.4928792-UTR-Ecto-sp13_S_contig5703:933..958Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5703 934..958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.4734535-CDS-Ecto-sp13_S_contig5703:825..9331681463790.4734535-CDS-Ecto-sp13_S_contig5703:825..933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5703 826..933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5703.16084.1prot_Ecto-sp13_S_contig5703.16084.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5703 826..933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5703.16084.1

>prot_Ecto-sp13_S_contig5703.16084.1 ID=prot_Ecto-sp13_S_contig5703.16084.1|Name=mRNA_Ecto-sp13_S_contig5703.16084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
METTDRGFYTPQDAYEDRQEGGAREINDWLEACGP*
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mRNA from alignment at Ecto-sp13_S_contig5703:671..958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5703.16084.1 ID=mRNA_Ecto-sp13_S_contig5703.16084.1|Name=mRNA_Ecto-sp13_S_contig5703.16084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5703:671..958- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACGGCGAGGGTGGTCAAGGCCATGGAGACCACCGATCGAGGATTCT
ACACCCCTCAAGATGCGTACGAGGACAGGCAAGAGGGTGGGGCGAGGGAG
ATTAACGATTGGCTGGAGGCTTGTGGGCCGTGAATACATCACTCTCCATC
CTTGCGAACCACATTAGACGTGTCCCTGGCGTGGCTATAGCGCGGGATGA
TGGCGTAGTTGATGTTCTCAAAAGGGTGTTTCCGTTTCGAACAGGTGTGT
GTCCTTGCATGCTAACTCCGCCAACACAAAAAGGACCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5703:671..958-

>mRNA_Ecto-sp13_S_contig5703.16084.1 ID=mRNA_Ecto-sp13_S_contig5703.16084.1|Name=mRNA_Ecto-sp13_S_contig5703.16084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5703:671..958- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGACCACCGATCGAGGATTCTACACCCCTCAAGATGCGTACGAGGA
CAGGCAAGAGGGTGGGGCGAGGGAGATTAACGATTGGCTGGAGGCTTGTG
GGCCGTGA
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