mRNA_Ecto-sp13_S_contig5702.16083.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5702.16083.1
Unique NamemRNA_Ecto-sp13_S_contig5702.16083.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5702.16083.1 vs. uniprot
Match: D8LBC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC0_ECTSI)

HSP 1 Score: 477 bits (1227), Expect = 1.410e-165
Identity = 236/244 (96.72%), Postives = 239/244 (97.95%), Query Frame = 1 
Query:  181 QGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAKAPKTLPSAGSDAFRLTSDKVEQMQTDLTSDFARYRFLLDLMEGNTDWEQANTIMAVYQGYPVEGEEEEEGGRPGVRQGWLAAFPGATPPDLSSAEGLVEALQADFPDDPDLLDGLEVIVETVYGGEAKRLHQGDPDNGVPPEPLYLRRSTLCKWLYLVGFLSDDIKRAPDDPEQLAELISGRARLKHQKK 912
            +GDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAKAPKTLPSAGSDAF LTSDK EQMQ DLTSDFARYRFLLDLMEGNTDWEQANTIMAVYQGYPVEGEEEEE GRPGVR+GW A+FPGATPPDLSSAEGLVEALQADFPDDPDLLDGLEVIVETVYGGEAKRLHQGDPDNGVPPEPLYLRRSTLCKWLYLVGFLSDDIKRAPDDPEQLAELISGRARLKHQKK
Sbjct:  154 KGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAKAPKTLPSAGSDAFCLTSDKAEQMQADLTSDFARYRFLLDLMEGNTDWEQANTIMAVYQGYPVEGEEEEESGRPGVRRGWSASFPGATPPDLSSAEGLVEALQADFPDDPDLLDGLEVIVETVYGGEAKRLHQGDPDNGVPPEPLYLRRSTLCKWLYLVGFLSDDIKRAPDDPEQLAELISGRARLKHQKK 397
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BLAST of mRNA_Ecto-sp13_S_contig5702.16083.1 vs. uniprot
Match: A0A7S2UZ53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ53_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.140e-20
Identity = 77/254 (30.31%), Postives = 123/254 (48.43%), Query Frame = 1 
Query:  181 QGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGA-ETSGCSAKAPKTLPSAGS---------DA-------FRLTSDKVEQMQTDLTSDFARYRFLLDLMEGNTD----WEQANTIMAVYQGYPVEGEEEEEGGRPGVRQGWLAAFPGATPPDL---SSAEGLVEALQADFPDDPDLLDGLEVIVETVYGGEAKRL--HQGDPDNGVPPEPLYLRRSTLCKWL----YLVGFLSDDIKRAPD 852
            +G T +  +V+ +G A+E+ DMGDA+VGAWD+ANL SDFLM+++   E  GCSA +    P             DA       +  T + VE+    +++++ RY F  + +E + D    W   +TI+A+   Y          G   V + W   +P   PP++         +E L+ D+P++PD LD L+  ++ +YG EA +L    GD +        + +R T+ KWL    +L  F  D  K   D
Sbjct:   99 EGKTQIMDVVVAVGEALEKVDMGDAYVGAWDVANLCSDFLMQRLDDHEPIGCSAVSSVPFPGEEEGISSSEEEDDAVEPTALKWMFTKEAVEETTEAMSTNWRRYLFQQNFLEPSEDEAMTWPHMSTIVAMLLNYKPPTTPGGPVGTEDVEERWREGYP--EPPNVFLEKDNTAFLEMLELDYPENPDDLDFLDEFIDQLYGMEAHKLACKSGDVE--------FSQRRTIVKWLQDRNFLASFPPDPAKNGRD 342
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BLAST of mRNA_Ecto-sp13_S_contig5702.16083.1 vs. uniprot
Match: A0A835Z1S2_9STRA (1,3-beta-glucan synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.010e-15
Identity = 41/89 (46.07%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:  181 QGDTDMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAKAPKTLPSAGSDAFRLTSDKVEQMQTDLTSDFARYR 447
            +G TD+  L++D+G+ +E FDMGDAFVG WD+ANLVSDF++ +MG E + CS K P+ + + G   F  T++ V  +Q +L  +F R R
Sbjct:   65 RGTTDLNQLIMDVGTTLESFDMGDAFVGGWDVANLVSDFMLARMGLERACCSTKLPEGISATGDTVF-ATAESVSSLQRELHGEFERPR 152
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BLAST of mRNA_Ecto-sp13_S_contig5702.16083.1 vs. uniprot
Match: A0A7S2B2L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B2L4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.010e-8
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:  193 DMTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGC 333
            D+T++++ +G  ME+ DMGDAFVG WD+AN  SD LM +MG ET  C
Sbjct:   26 DLTSVMMYLGEVMEKTDMGDAFVGPWDVANACSDLLMARMGRETCDC 72
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BLAST of mRNA_Ecto-sp13_S_contig5702.16083.1 vs. uniprot
Match: A0A7S2TY21_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TY21_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 2.370e-5
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 1 
Query:  181 QGDTDMTTLVLDMGSAM---EQFDMGDAFVGAWDIANLVSDFLMEKM-GAETSGCSAKAPKTLPS 363
            +G  D+T +VL++G  +   +QFDMGDAFVG WD+AN+V D L+ ++ G + + C+      +PS
Sbjct:  143 EGINDVTLMVLEIGGFLSDPKQFDMGDAFVGGWDVANMVGDLLIARIAGPDGADCACSDVVVIPS 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5702.16083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LBC0_ECTSI1.410e-16596.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UZ53_9STRA1.140e-2030.31Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z1S2_9STRA1.010e-1546.071,3-beta-glucan synthase n=1 Tax=Tribonema minus T... [more]
A0A7S2B2L4_9STRA2.010e-855.32Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2TY21_9EUKA2.370e-541.54Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5702contigEcto-sp13_S_contig5702:261..2370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score473.0
Seed ortholog evalue8.2e-131
Seed eggNOG ortholog2880.D8LBC0
Model size1083
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CZVC@1,2SBU5@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_004480.1
Cds size720
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.3392787-UTR-Ecto-sp13_S_contig5702:260..4551681463790.3392787-UTR-Ecto-sp13_S_contig5702:260..455Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5702 261..455 +
1681463790.381728-UTR-Ecto-sp13_S_contig5702:2202..23701681463790.381728-UTR-Ecto-sp13_S_contig5702:2202..2370Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5702 2203..2370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463790.3496137-CDS-Ecto-sp13_S_contig5702:455..6281681463790.3496137-CDS-Ecto-sp13_S_contig5702:455..628Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5702 456..628 +
1681463790.3605917-CDS-Ecto-sp13_S_contig5702:1062..14231681463790.3605917-CDS-Ecto-sp13_S_contig5702:1062..1423Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5702 1063..1423 +
1681463790.372284-CDS-Ecto-sp13_S_contig5702:2016..22021681463790.372284-CDS-Ecto-sp13_S_contig5702:2016..2202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5702 2017..2202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5702.16083.1prot_Ecto-sp13_S_contig5702.16083.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5702 456..2202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5702.16083.1

>prot_Ecto-sp13_S_contig5702.16083.1 ID=prot_Ecto-sp13_S_contig5702.16083.1|Name=mRNA_Ecto-sp13_S_contig5702.16083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MTTLVLDMGSAMEQFDMGDAFVGAWDIANLVSDFLMEKMGAETSGCSAKA
PKTLPSAGSDAFRLTSDKVEQMQTDLTSDFARYRFLLDLMEGNTDWEQAN
TIMAVYQGYPVEGEEEEEGGRPGVRQGWLAAFPGATPPDLSSAEGLVEAL
QADFPDDPDLLDGLEVIVETVYGGEAKRLHQGDPDNGVPPEPLYLRRSTL
CKWLYLVGFLSDDIKRAPDDPEQLAELISGRARLKHQKK*
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mRNA from alignment at Ecto-sp13_S_contig5702:261..2370+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5702.16083.1 ID=mRNA_Ecto-sp13_S_contig5702.16083.1|Name=mRNA_Ecto-sp13_S_contig5702.16083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2110bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5702:261..2370+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCCCCCACACCCCTCGAAGTCATGTGCCGACCAACCCATCGAGACCCTA
ACCGTTGACGAATGGGAAAACAGTTTTGTGCAATCTCTTGCTTGACTGCA
GTTTCTCCCTCCCTCTCTCTCTGGCGTTGTCCGTCGTCATCGACACGTTT
CTTCCGCACGCGGCGGTTATCACTGAATGGCAGGGCGACACTGACATGAC
CACCCTGGTGCTAGACATGGGGTCAGCGATGGAGCAGTTCGACATGGGGG
ACGCGTTCGTTGGGGCGTGGGACATCGCCAACCTTGTGTCGGACTTCCTG
ATGGAGAAGATGGGAGCGGAGACGAGCGGCTGCAGCGCCAAGGCCCCCAA
GACCCTGCCCTCCGCTGGGTGTGTTGTGGTTTGGTTTCATTTGCCGGTCG
TGCAATACTGTCTGGAATTATGTCAAGAAATATTGGCGGCACATAGCTGT
ATTGGACGGGCAGACACGCCAAACAAGGGCACTTTGGTCGGCGGCACGTG
AAAAGCCAAAATTGGCTTCAAGAATATTTGTGTGCCTGATGCCCGTGCCA
CCAAAGAACGACTAAGGCATCTGCTGGCAACCTCATTGCTTGACTGTTCC
GATGGATCATCCACCTCGCAGATGAAGTCGTGGCTTAGCCGCGGACCACC
TGTTGTTCACCAAACCACTGTGTCCCGGCAATCTGATGTACCCTTTCTTG
TCTGTTGGCTGTGGTTTTTGTCTCTTTTTTGTCGCTACCACCCGGGGGAA
CGGTGACGACCGGTGCCACCGGACCGAAAATACCGTCTGCGGCCGAGGAC
AGCAGCGACGCGTTCCGTCTCACCTCGGACAAGGTGGAACAGATGCAGAC
GGACCTAACGTCCGACTTCGCCCGGTACCGCTTCCTGCTGGACTTGATGG
AGGGCAACACCGACTGGGAGCAGGCGAACACGATCATGGCCGTGTACCAG
GGCTACCCCGTCGAGGGCGAGGAGGAGGAGGAGGGTGGCCGGCCGGGGGT
GCGCCAGGGGTGGTTGGCCGCGTTTCCTGGGGCAACGCCCCCGGACTTGA
GCTCGGCGGAGGGCCTGGTGGAGGCCTTGCAAGCAGACTTTCCGGACGAT
CCGGATCTGCTCGATGGACTGGAGGTGATCGTGGAGACCGTGTACGGAGG
CGAGGCGAAAAGGGTGAGAGCTTATGTATGAGTTCGGTTACCATTCCACT
GTATGCAAGAGGAGAGTTGGTTTGGTTACAAAAACCACAGCATAGGTCTT
ACTAGCTGTTCGTGGTGACCCTCCCTCTCCCGGCTGCGTGCCGCACGTGT
GTGTTTTGAGACAGCGCGCCGCGAACCTTCGCGATTTTTCAGAGGGTGTT
GTAGGGACTGTTTGCGTCAGAGGCGTGAGGCGGGGTACGATTTCCTTGAC
CGGAGAACTGTAAGTGTTGTCTCTCAGGCGTTGTTTGTGTCTGTGTGCAA
CGAAACCAAATTGCCTGCGAATTTGCTTCGAGGCGAGTCAAATCCAGTGG
TTCTAGGAAGGAAAACATGAAGGAGCGTGTCTTGTAGAACAATCGTGCTG
GTTGGGTAATCTACCAGCCCCCAGCCTTTTTCATCTGCGTGGCTCATTGT
GTGTGTTTGTCATCCGGGCACTGTTGAATGCTCTGCCTCTGTTCACTTTC
CTCGCTTTCGCTCATCGGCTATTTGGTTTCCCGCGCTGTTTGTTTGCGTG
CTCGTTCTCGCGAACGCACCGCATTTCCTCCTGATTGCCCTTACTGGCTG
GCGCAGCTGCACCAAGGTGACCCAGACAACGGTGTCCCTCCCGAGCCGCT
GTACTTAAGACGATCGACCTTGTGCAAGTGGCTCTACCTCGTGGGGTTTC
TGTCGGACGATATCAAGAGAGCACCGGACGATCCGGAGCAGCTCGCAGAA
CTTATTTCGGGGAGGGCGCGGCTGAAACATCAAAAGAAATAAGGAACAGT
CGGTGTTGCACGGCTTGGGGGGAACGTAAGCATGTCGCTTTTTCGGCTGT
CCCGAAGGGAGACTACGAGGGGTGGACAGCGGACAAGCCTGAACGAGTAA
TGACTAGAACGAGAGGAGAGATCCAGCGATGTCGGTAGTCCACGAGGTGT
GGTCCGAATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5702:261..2370+

>mRNA_Ecto-sp13_S_contig5702.16083.1 ID=mRNA_Ecto-sp13_S_contig5702.16083.1|Name=mRNA_Ecto-sp13_S_contig5702.16083.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5702:261..2370+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCACCCTGGTGCTAGACATGGGGTCAGCGATGGAGCAGTTCGACAT
GGGGGACGCGTTCGTTGGGGCGTGGGACATCGCCAACCTTGTGTCGGACT
TCCTGATGGAGAAGATGGGAGCGGAGACGAGCGGCTGCAGCGCCAAGGCC
CCCAAGACCCTGCCCTCCGCTGGCAGCGACGCGTTCCGTCTCACCTCGGA
CAAGGTGGAACAGATGCAGACGGACCTAACGTCCGACTTCGCCCGGTACC
GCTTCCTGCTGGACTTGATGGAGGGCAACACCGACTGGGAGCAGGCGAAC
ACGATCATGGCCGTGTACCAGGGCTACCCCGTCGAGGGCGAGGAGGAGGA
GGAGGGTGGCCGGCCGGGGGTGCGCCAGGGGTGGTTGGCCGCGTTTCCTG
GGGCAACGCCCCCGGACTTGAGCTCGGCGGAGGGCCTGGTGGAGGCCTTG
CAAGCAGACTTTCCGGACGATCCGGATCTGCTCGATGGACTGGAGGTGAT
CGTGGAGACCGTGTACGGAGGCGAGGCGAAAAGGCTGCACCAAGGTGACC
CAGACAACGGTGTCCCTCCCGAGCCGCTGTACTTAAGACGATCGACCTTG
TGCAAGTGGCTCTACCTCGTGGGGTTTCTGTCGGACGATATCAAGAGAGC
ACCGGACGATCCGGAGCAGCTCGCAGAACTTATTTCGGGGAGGGCGCGGC
TGAAACATCAAAAGAAATAA
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