mRNA_Ecto-sp13_S_contig5697.16072.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5697.16072.1
Unique NamemRNA_Ecto-sp13_S_contig5697.16072.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: A0A6H5L4Q8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q8_9PHAE)

HSP 1 Score: 808 bits (2086), Expect = 2.070e-289
Identity = 455/502 (90.64%), Postives = 464/502 (92.43%), Query Frame = 3
Query:    3 TSHHAQDFVQASRTGTCFARGMETPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTSLDDGRSATDSRVGFDPVATSEPSPLLETQESGMEEGRGGQLELTPLTQSNSLDDVDDXXXXXXXXXXXXXXXXSEECSSARATVSNAAGGDGSGHIAVVPDSKGRGASSAREKLIGGAINIASNDRAT-LGDASETASKIDTDRYGVGNSFGDGGSNRNGSGDRFLQPPREAPSGGASLSSPVGLSETLGFAGSTKGTPSGRRGHIGNDSGKRVTGFSTQDGGDTSCAAGESQTATRTSAVWRECLVPVRLLEEKRVRAILFVYGIYSVSKQ 1505
            TS HAQDFVQAS TGTCF   M TPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAI+KCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGL+GRYPYLLPNVVGASIAFSGLPMVFFFLKETT+LDDGRS T SRVGFDPVATSEPS LLETQ+SGMEEGRGGQLELTPLTQSNSLDDVD XXXXXXXXXXXXXXXX    SSARA VSNAAGGDG GH AVVPDSKGRGASSAREK  GGAIN  SNDR   LGD SETASKID DRY VGNSFGDGGSNRN SGDRFLQPPREAPSGGASLSSPVG   TLGFAGSTKG+PSGRR +IG+D G RVTGFST+DGGD SCAAGESQ ATR SAVWRECLVPVRLLE KRVRAILFVYGIYSVS+Q
Sbjct:   13 TSRHAQDFVQASPTGTCFG-DMGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLYGRYPYLLPNVVGASIAFSGLPMVFFFLKETTNLDDGRSVTQSRVGFDPVATSEPSTLLETQDSGMEEGRGGQLELTPLTQSNSLDDVD-XXXXXXXXXXXXXXXXXXXXSSARAMVSNAAGGDGGGHRAVVPDSKGRGASSAREKSTGGAINHPSNDRVVALGDESETASKIDADRYRVGNSFGDGGSNRNSSGDRFLQPPREAPSGGASLSSPVGRIATLGFAGSTKGSPSGRRDYIGDDLGNRVTGFSTEDGGDASCAAGESQIATRRSAVWRECLVPVRLLEVKRVRAILFVYGIYSVSEQ 512          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: D8LRH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH7_ECTSI)

HSP 1 Score: 798 bits (2061), Expect = 9.860e-283
Identity = 436/480 (90.83%), Postives = 444/480 (92.50%), Query Frame = 3
Query:   66 METPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTSLDDGRSATDSRVGFDPVATSEPSPLLETQESGMEEGRGGQLELTPLTQSNSLDDVDDXXXXXXXXXXXXXXXXSEECSSARATVSNAAGGDGSGHIAVVPDSKGRGASSAREKLIGGAINIASNDRATLGDASETASK-IDTDRYGVGNSFGDGGSNRNGSGDRFLQPPREAPSGGASLSSPVGLSETLGFAGSTKGTPSGRRGHIGNDSGKRVTGFSTQDGGDTSCAAGESQTAT-RTSAVWRECLVPVRLLEEKRVRAILFVYGIYSVS 1499
            M TPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGV DDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAI+KCMISEICGKQHE VGMGY+TGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETT+L DGRS TD+R GFDPVATSEPSPLLETQE+GMEEGRGGQLELTPLTQSNSLDDVD XXXXXXX         SEECSSARATVS AAGGDG GH AVVPDSKGRG SSA EK IGGAINI SNDR TLGD SETASK ID DRYGVGNSFGDGGSNRN SGDRFLQPPREAPSGGAS SSPVG SETLGFAGSTKG+PSGRR HIG+D G RVTGFST+DGGDTSCAAGESQTAT R SAVWRECLVPVRLLEEKRVRAILFVYGIYS S
Sbjct:    1 MGTPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVADDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAISKCMISEICGKQHETVGMGYITGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTNLGDGRSVTDTRAGFDPVATSEPSPLLETQETGMEEGRGGQLELTPLTQSNSLDDVDXXXXXXXXHLAELLGERSEECSSARATVSTAAGGDGGGHRAVVPDSKGRGGSSAWEKSIGGAINIPSNDRVTLGDESETASKKIDVDRYGVGNSFGDGGSNRNSSGDRFLQPPREAPSGGASHSSPVGRSETLGFAGSTKGSPSGRRDHIGDDLGNRVTGFSTEDGGDTSCAAGESQTATTRRSAVWRECLVPVRLLEEKRVRAILFVYGIYSFS 480          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: A0A6H5KX19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX19_9PHAE)

HSP 1 Score: 734 bits (1894), Expect = 1.970e-257
Identity = 425/509 (83.50%), Postives = 433/509 (85.07%), Query Frame = 3
Query:    6 SHHAQDFVQASRTGTCF---ARGMETPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTSLDDGRSATDSRVGFDPVATSEPSPLLETQESGMEEGRGGQLELTPLTQSNSLDDVDDXXXXXXXXXXXXXXXXSEECSSARATVSNAAGGDGSGHIAVVPDSKGRGASSAREKLIGGAINIASNDRAT-LGDASETA-SKIDTDRYGVGNSFGDGGSNRNGSGDRFLQPPREAPSGGASLSSPVGLSETLGFAGSTKGT-------PSGRRGHIGNDSGKRVTGFSTQDGGDTSCAAGESQTATRTSAVWRECLVPVRLLEEKRVRAILFVYGIYSV 1496
            S HA DFVQAS TG CF   ARGMETPFPWLPMLALAIGLVSHSYS SSLFPYVGYMVQHLGVTDD+DEAGYYAG LASAFMVGRF   XXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMN L+ I+KCMISEICGKQHE VGMGYVTGC SFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKET +LDDGRS TDSRVGFD VAT EPS LLETQ+SGMEEGRGGQLE+ PLTQSNSLDDVD XXXXXXXXXXXXXXXX                     H AVVPDSKGRGASSAREK  GGAIN  SNDR   LGD SETA  KID DRYGVGNSFGDGGSNRN SGDRFLQPPREAPSGGASLSSPVG SE LG AGSTKG        PSGRRGHIG+D G RVTGFST+DG D SCAAGESQ A RTSAVWRECLVPVRLLEEKRVRAIL VY IYSV
Sbjct:   46 SRHALDFVQASPTGNCFELDARGMETPFPWLPMLALAIGLVSHSYSFSSLFPYVGYMVQHLGVTDDRDEAGYYAGCLASAFMVGRFATSXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNALMGISKCMISEICGKQHETVGMGYVTGCSSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETLNLDDGRSVTDSRVGFDLVATPEPSTLLETQDSGMEEGRGGQLEMAPLTQSNSLDDVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-HRAVVPDSKGRGASSAREKSTGGAINHPSNDRVVALGDKSETARKKIDVDRYGVGNSFGDGGSNRNSSGDRFLQPPREAPSGGASLSSPVGRSEILGLAGSTKGNKGYSQQHPSGRRGHIGDDLGNRVTGFSTEDGSDASCAAGESQIAMRTSAVWRECLVPVRLLEEKRVRAILVVYCIYSV 553          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: D8LRH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRH9_ECTSI)

HSP 1 Score: 348 bits (894), Expect = 1.960e-107
Identity = 214/474 (45.15%), Postives = 273/474 (57.59%), Query Frame = 3
Query:   72 TPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTSLDDGRSATDSRVGFDPVATSEPSPLLETQESGMEEGRGGQLELTPLTQSNSLDDVDDXXXXXXXXXXXXXXXXSEECSSARATVSNAAGGDGSGHIAVVPDSKGRGASSAREKLIGGAINIASNDRATLGDASETASKIDTDRYGVGNSFGDGGSNRNGSGDRFLQPPREAPSGGASLSSPVGLSETLGFAGSTKGTPSGRRGHIGNDSGKRVTGFSTQDGGDTSCAAGESQTATRTSAVWRECLVPVRLLEEKRVRAILFVYGIYS 1493
            TPFPWLPMLA+AIGLVSHSY+L+SLFPYVGYMVQHLGVTDDKDEAGYYAGY++SAFMVGR          AD +GRLPV+Y GL+S+ VLS+AFGLST+F WAL CRFLLG +NGL+ I+K M SE+CGK+HE  GM YV GC S GLVIGP  GGLLA+PATHYP VFS+SGLFGR+PYLLPN+VGA IA +GLP VFFFLKET  + + R   DS   F  ++ SE    +ET E+   E  GG +E+TP  ++ +  + D                   E S A        G  G+     + +  GR +     +L+  +   +++D    GD  + A+           +FG GG  R  + +RF    R                + L                      ++  GF   D G      GE +   R S  WRECLVP++LL E+R R ++FVY ++S
Sbjct:   24 TPFPWLPMLAIAIGLVSHSYALTSLFPYVGYMVQHLGVTDDKDEAGYYAGYVSSAFMVGRVGSSYFWGRFADSHGRLPVIYAGLTSMVVLSIAFGLSTSFLWALGCRFLLGVLNGLLGISKAMTSEVCGKEHEATGMAYVLGCASIGLVIGPGLGGLLAEPATHYPTVFSQSGLFGRFPYLLPNIVGAGIALTGLPFVFFFLKETRHVHNNRG--DSSGEFKLLSVSEAG-TVETHEAATVE-EGGMVEMTPTARTQNTLESD---TNGSGRDNILLADRRAEGSRAVRYDGGIEGRSGTADCYDIDEDHGRNSGEQSRQLLSASGRSSNDDYVDDGDERDEAA-----------AFGAGGG-RKSNRERFRTTTRAL--------------QRL----------------------EKAKGFGDSDSG------GEGRWGRR-STCWRECLVPIQLLTERRTRNVMFVYALFS 435          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: D8LP17_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP17_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 2.070e-55
Identity = 116/261 (44.44%), Postives = 152/261 (58.24%), Query Frame = 3
Query:   72 TPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKET-TSLDDGRSATDSRVGFDPVATSEPSPLLETQESGMEEGRGGQLELTPLTQSNSLD 851
            T FP+ P++ LA+ L ++ Y+LS+LFPYVG M  HL      +E+GYYAGY+AS+F  GRF         AD  GR PVV +GLSSI   S+ FGLST+F  A+  RF+LG  NG++   + +  E+CG +H   GM Y+ G    GLV+G A GGLLAQPA+ YP VFS +G+F RYP+LLPN+VGA  A   L +V  FL ET TS      A   R  F P A +     +      + +    QLE  PL  +   D
Sbjct:   14 TAFPYRPVVILALVLTTNGYTLSNLFPYVGTMTMHLLGLSTTNESGYYAGYVASSFTFGRFLTAYVWGNAADTIGRKPVVIVGLSSIMACSVVFGLSTSFAMAVGSRFVLGLTNGIMPAVRTLTREVCGPEHVVSGMNYIAGSKGVGLVMGTAIGGLLAQPASTYPGVFSATGVFARYPFLLPNLVGAGFALVMLALVIVFLPETRTSNKADARAAPRREAF-PAANA-----ISVAGRKLRKSSRSQLEYKPLKDNEEAD 268          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: A0A7R9UB92_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UB92_9STRA)

HSP 1 Score: 197 bits (502), Expect = 1.210e-53
Identity = 96/205 (46.83%), Postives = 135/205 (65.85%), Query Frame = 3
Query:   78 FPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTS 692
            +P   +L  A+ + +H++SL+SLFPYVGYMV  +G TDD D+AGYYAG++ +AFM GR          ADRYGR PV+ IG +SI VLS+ FG+ST F  AL  RFL+G  NG+   +K +++E+C +  +   MG+VTG WS GL++GPA GG+ A+     P      G+FGR+PYLLPN++ A+IA       +F+L ET +
Sbjct:   26 YPLRQLLVAAVAMFAHAFSLTSLFPYVGYMVVDIGATDDVDKAGYYAGFVGAAFMAGRTVSSFFWGIYADRYGRKPVILIGCASIAVLSVLFGVSTTFSMALVTRFLIGLGNGIAGTSKTIVAELCSEDFQPRAMGFVTGTWSLGLILGPALGGVTARQTLGLP------GIFGRFPYLLPNLITAAIACYAFYQTWFYLPETAA 224          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: D8LET2_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET2_ECTSI)

HSP 1 Score: 187 bits (476), Expect = 2.810e-50
Identity = 102/242 (42.15%), Postives = 144/242 (59.50%), Query Frame = 3
Query:   63 GMETPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICG-KQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKETTSLDDGRSATDSRVGFDPVATSEPSPLLETQES 785
            G  + FP   ++ LA+  V HSY+  SLFPYVG M + L   +  + +G+YAGY+ASA+M+G F         +D  GR PV+ +GL ++ VLSL FGLST +  A++ RF+LG MNG++   +  + E+C    H    M Y+ G  +  +V G A GGLL QP  HYPNVFS +GLFGR+P+LLPN+VG  +A   LP+V   + ET   +D    T SR  F  V++ E +  L  + S
Sbjct:   13 GNVSTFPIRTIVVLALCAVVHSYTSISLFPYVGTMAKELLDLESTNTSGFYAGYVASAYMLGHFLSGYLWGYASDSVGRKPVILVGLLAVAVLSLTFGLSTTYELAISSRFVLGVMNGIMPAIRTTVYEVCTTNSHVVQAMAYIDGAKAVTIVFGSAMGGLLVQPVDHYPNVFSGTGLFGRFPFLLPNLVGVGLALLILPIVIACVPETKDFED----TCSRSRFSSVSSGEATSGLSAESS 250          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: A0A7C9AF44_OPUST (MFS domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AF44_OPUST)

HSP 1 Score: 187 bits (474), Expect = 2.340e-49
Identity = 90/202 (44.55%), Postives = 134/202 (66.34%), Query Frame = 3
Query:   81 PWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKET 686
            PW  + ++ I ++ ++  +SSLFP++ +MV+   +   +++ GYYAG++ SAFM+GR          ADRYGR PV+  G +++ + +  FGLS  FW A++ RFLLG++NGL+   K  ISE+C ++H+ VGM  +T  W  GL+IGPA GGLLAQPA  YP+V SE  LF R+PYLLP +V  SI  + + ++ F+L ET
Sbjct:   34 PWKTLASVWIIVLCNALPISSLFPFLYFMVRDFHIAQQEEDVGYYAGFVGSAFMLGRALTSVFWGTIADRYGRKPVMIFGAAAVVIFNTLFGLSVNFWMAVSTRFLLGSLNGLLGPAKAYISEVCREEHQAVGMSVITTAWGIGLIIGPALGGLLAQPAEKYPHVVSEGSLFARFPYLLPCLV-ISIFAAVVTVITFWLPET 234          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: A0A6H5K5T8_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T8_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.370e-49
Identity = 99/222 (44.59%), Postives = 136/222 (61.26%), Query Frame = 3
Query:   78 FPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGR-------------------YPYLLPNVVGASIAFSGLPMVFFFLKET 686
            FP   ++ LA+ +  HSY+L SLFPYVG MV  L   +  +EAG+YAGY+ASAF  GRF          D  GR PV+ +GL SI + SL FGLST++ WA++ R +LG  NG++A  +  ++E+CG +H  VGM Y+  C +  +V+G   GG+LAQPA HYP++FS +GLFGR                   YP+LLPN+VGAS A   + +V  +L ET
Sbjct:   34 FPTRLVIILALAMTVHSYALVSLFPYVGMMVSDLLSLETLNEAGFYAGYVASAFTFGRFLSGYAWGHVTDSAGRKPVIVLGLMSIIIFSLTFGLSTSYAWAVSSRLILGLTNGIMAALRVSLNEVCGPKHVLVGMNYLNSCRAISMVVGTGVGGVLAQPAVHYPSLFSATGLFGRWAKNPKRRRLRLMFFPRSRYPFLLPNLVGASCALVIMVLVIIYLPET 255          
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Match: A0A7S1CJ88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CJ88_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.260e-48
Identity = 95/228 (41.67%), Postives = 143/228 (62.72%), Query Frame = 3
Query:   12 HAQDFVQASRTGTCFA-RGMETPF--PWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYYAGYLASAFMVGRFXXXXXXXXXADRYGRLPVVYIGLSSIGVLSLAFGLSTAFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGLVIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMVFFFLKET 686
            HA D   ASR G+  A R  E P+  P   +  LAI L +++ +++ LFP+VG+MV+ LG+T D+ E G+YAG++ SAFMVGR          +D++GR PV+ +GL SI V + AFGLS++F  A+  R + G  N ++   K   SE+  K  +   M ++TGCW  G+++GPA GG+LA+PA+ YP+ F+  G+F RYPYLLPN+V +++A       + +  ET
Sbjct:   26 HAGDV--ASRGGSDDAQRAGERPYRYPREQVGVLAIVLFANALNVTMLFPFVGFMVEDLGMTHDRAELGFYAGWIGSAFMVGRTCTSFAWGTWSDKHGRRPVLLLGLVSIVVTAAAFGLSSSFAMAIVARLIAGLCNAIVGTAKTCASEMTSKADQGRAMVWITGCWGLGIIVGPAVGGMLARPASQYPSAFAADGVFARYPYLLPNLVTSAVAVVATLACWLWFDET 251          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5697.16072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q8_9PHAE2.070e-28990.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH7_ECTSI9.860e-28390.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KX19_9PHAE1.970e-25783.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRH9_ECTSI1.960e-10745.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LP17_ECTSI2.070e-5544.44MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7R9UB92_9STRA1.210e-5346.83Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
D8LET2_ECTSI2.810e-5042.15MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7C9AF44_OPUST2.340e-4944.55MFS domain-containing protein (Fragment) n=1 Tax=O... [more]
A0A6H5K5T8_9PHAE2.370e-4944.59MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S1CJ88_9STRA8.260e-4841.67Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5697contigEcto-sp13_S_contig5697:2..7275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score807.0
Seed ortholog evalue4.9e-231
Seed eggNOG ortholog2880.D8LRH7
Model size1970
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2615@1,KOG2615@2759
Cds size1476
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5697.16072.1prot_Ecto-sp13_S_contig5697.16072.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5697 431..5386 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463788.3712032-UTR-Ecto-sp13_S_contig5697:1..4301681463788.3712032-UTR-Ecto-sp13_S_contig5697:1..430Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5697 2..430 -
1681463788.4647264-UTR-Ecto-sp13_S_contig5697:5386..53941681463788.4647264-UTR-Ecto-sp13_S_contig5697:5386..5394Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5697 5387..5394 -
1681463788.4748604-UTR-Ecto-sp13_S_contig5697:7218..72751681463788.4748604-UTR-Ecto-sp13_S_contig5697:7218..7275Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5697 7219..7275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463788.3833053-CDS-Ecto-sp13_S_contig5697:430..12471681463788.3833053-CDS-Ecto-sp13_S_contig5697:430..1247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5697 431..1247 -
1681463788.396524-CDS-Ecto-sp13_S_contig5697:1679..18021681463788.396524-CDS-Ecto-sp13_S_contig5697:1679..1802Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5697 1680..1802 -
1681463788.405601-CDS-Ecto-sp13_S_contig5697:2263..23691681463788.405601-CDS-Ecto-sp13_S_contig5697:2263..2369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5697 2264..2369 -
1681463788.43601-CDS-Ecto-sp13_S_contig5697:4191..42951681463788.43601-CDS-Ecto-sp13_S_contig5697:4191..4295Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5697 4192..4295 -
1681463788.4461894-CDS-Ecto-sp13_S_contig5697:4665..48491681463788.4461894-CDS-Ecto-sp13_S_contig5697:4665..4849Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5697 4666..4849 -
1681463788.4553761-CDS-Ecto-sp13_S_contig5697:5244..53861681463788.4553761-CDS-Ecto-sp13_S_contig5697:5244..5386Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5697 5245..5386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5697.16072.1

>prot_Ecto-sp13_S_contig5697.16072.1 ID=prot_Ecto-sp13_S_contig5697.16072.1|Name=mRNA_Ecto-sp13_S_contig5697.16072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=492bp
METPFPWLPMLALAIGLVSHSYSLSSLFPYVGYMVQHLGVTDDKDEAGYY
AGYLASAFMVGRFATSYFWGRFADRYGRLPVVYIGLSSIGVLSLAFGLST
AFWWALTCRFLLGAMNGLIAITKCMISEICGKQHEKVGMGYVTGCWSFGL
VIGPAFGGLLAQPATHYPNVFSESGLFGRYPYLLPNVVGASIAFSGLPMV
FFFLKETTSLDDGRSATDSRVGFDPVATSEPSPLLETQESGMEEGRGGQL
ELTPLTQSNSLDDVDDDDDHADEHLAELLEERSEECSSARATVSNAAGGD
GSGHIAVVPDSKGRGASSAREKLIGGAINIASNDRATLGDASETASKIDT
DRYGVGNSFGDGGSNRNGSGDRFLQPPREAPSGGASLSSPVGLSETLGFA
GSTKGTPSGRRGHIGNDSGKRVTGFSTQDGGDTSCAAGESQTATRTSAVW
RECLVPVRLLEEKRVRAILFVYGIYSVSKQLCAFLSTAFKM*
back to top

mRNA from alignment at Ecto-sp13_S_contig5697:2..7275-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5697.16072.1 ID=mRNA_Ecto-sp13_S_contig5697.16072.1|Name=mRNA_Ecto-sp13_S_contig5697.16072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7274bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5697:2..7275- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACTTCCCATCACGCGCAGGACTTCGTCCAAGCTTCTCGAACTGGAACC TGCTTTGGTGAGCAGCACGTTGCAACGTATGCATGAATACTTGAACTGAC ACAGGCGGGGCGTCGATGCCATAGTGAAGATACCAACAAAGCCGTGGAGT TGAGTGTTGCATGGCTGCTACTGTCACGGACGAACTCAAGCTGCCATTTC ATGAGTTTCCCTCTATTCCTTGTGTAGCTGTTGGTGTTCGGGAGAGAAAT CGTTTGACATCGAGGAGCTCCGCTCGAAGAGTGAGCAACTCTCATGATCC GGCAACCATGGTCGGTACGGGCCAGTTTGAACTTAAAACTTGCACACGAC GGTGCCCAGGTGCAAGATGGGACAAAAAATGACAAAACGTCCCTGCCTTA CCCTCCTCCTGTGGGAGCCAGGCTGATGAGTCAGATGTATATCGGAAGGC TCCTGCTGGCGCTGATGGCGCTCCTGCTTTATTATCGTGGATGGAATGAA AATACACGCGATTGATCGGGCATTTGAAAAAATCAAGACAAACATGCGAT CCATATGCGTACACACACCAACAAAATTGTGACGCTACAGGAATATTAGC TAAGAGGACGGTGAAAGAAAGAAGGAGTATTAAAGCAGCAACAACATGCA AGGTCCGACACGAACACGAGTATAATTTTATACACACACAGAGAGACTAG CCGTTCGAGACAAAACCACAGTCGCAAGGGATGTGGTTGAGTCTTTTCAG TGAGTGGAGGAACCGGCTAGGTCTGGACTTACGACACTCCCTCACGGGGT CCCAGATCATGACGTTTGGAAGAGTGTAGTGCTTCCAACCGCACTGAGAC TGGCGTATTTTCTTTGGTTAGCCGATTAGCGCGGTCGATGCCGATAATAA AGACACTCACACAATCAATACTGGAGTGATTGACTTCCACGGCCCTGGGA AAGGATCTATGTCCCCACATGCTCGCGGAAGTACAAAAACATGATGCCAC ATTTTTCACCAAGACTGTTTCGTCGCGTTCAGCGAGCTACAACAACAGCA ACAGCAGCAGTACCACCAACAGGCCTATCATGCACACTAGACAGACTATT CCCTGGTACCTGACCGTCATCAGTGTTGTTGCACGTTGCCATGTTGACCT GTTCGCTCACACCACACACAAGCCGGTCTCGAGTTGCAGCCGAATGCGGT TACTCATTATGAGAGTTAGTGACCCCGCTGAGTCCACACTTTGTACGTGG GTTGTATGACGTGTCCTTTAGGGAGTGTCCGGTAATGCGGTGAAAAAGTG AGATCCTGTTCGTGCTTTGTCTTCCATTCTGGGCTCCAGTCTTGTAGTCT ACTTCACCTTTCGGTATGCGTTTGATGCACCAGCCTTTCCTTCTTCTGTG CGTGCCTTCAAGCTTCAAACGCTATTCGAAGGGTTCACCCATCTCCTTTC TCTTGAACCTCGCATCTTTTTGTAGAGTCTCGGTATGCGGTGACTTAGAC CCTCCGGATATATCCGAACTAATTCACAACTTATGGATGTCAGAGGTTGT AGAGAAGCAGACTCGAAAACATGGTGACAATCACAATGTTTAGTGTGATT GGAGAAAGAGGTAGTAAAGCCCCATAGCCAACGTATTCGCAGAGCCACCT TTACAAGCTGGTTATCTCTTGTAGATGTAGAATGGACTGTTATCTGAAGA ACAAATTTTATACCTAGTTGTTCTTTTGTCCCTAGAGGTTCACCGTAAAA GCAAGCATCCGATGCCGGATCTGACACCCGGGACGTATGTGTGGGGATAT GCAGTGGGTGCGAACGGCAACTTGAAGCAGACCGAACGCCCTCCCAACGA ACGGTCCCGTCGTCGCGTGTCTTTCCAACAGCCAGGGGCATGGAGACTCC TTTTCCATGGCTGCCGATGCTCGCCCTCGCGATCGGCCTCGTGAGCCATT CGTACTCCCTGTCAAGCCTTTTCCCCTACGTGGGGTACATGGTGCAGCAC CTCGGGGTCACCGACGACAAGGATGAGGCAGGTGAGTACTACACTCGCAC TCATGACTGTGTGGCTTTCTGTTGGAACGGAACATGCCACCCTCTTGGCT TCTGATTCATTCATGGGAGAGGGGCGAGATCCTCACAAGGTGTGTTTAGT CGAGACGCATTTTACCCCACGCATTACGGGACACTTTCGGCCTGAAAAAA CTAGGTGCCTTCGCGTGACATACTGCATGTGTAACGTTGCCCTCACCCAA TCAAACATGTAGTGAGCACCGCGCTAGGCCAGCAGCTCACGTACACATAC CAACTCAGCTCAACACCACCGGGAACACGAAATTCAACTAAAACTCCACG CGCAGATGACCGTCGACCCCTCCCCGTCCCCCCCGCCCGAACAAACAAAA CACACGAAACGAACACCAACCAACAGGATACTACGCCGGCTACCTGGCGT CCGCCTTCATGGTTGGTCGGTTCGCCACCTCGTACTTTTGGGGCCGCTTC GCAGACCGCTACGGGCGGCTGCCGGTGGTGTACATCGGACTCAGCTCCAT CGGCGTCCTGTCTTTGGCTTTCGGGCTGTCGACCGCCTTCTGGTGGGCCC TCACTTGCCGGTGAGGGTTAGGATTAGGGTTAGGATTAGGGTTTGGGTTA AGATTGGACCTATAGATGAGGCCTTGAGTGTATGCTCTCGTACGTTACGC AAGATACCGCACCTCCCTGAGAAAATTCTAAGGCCAAGTGGGTAGCTTGA CAACAGGAATGGTGTGCGCGTCGATTGGGATGGCCCTGGAAAGATCTCGT CCAAGACCTTCAAAGCATCCAATCGTTTCGTATCGGCGACCCTCTTGTCT TGGGGAGAAAACGACCTTCTCGATTTTCGCATGAGGAGGGCTGTACCCAT CTTTTGCGATCATGTTCAAAGGCAGCGAAGAATGCATCGACTTGAGTTAC TATTCACGCCGACGGCCTCCCACCCACTAGGTTTCTCCTGGGAGCGATGA ACGGCCTCATAGCTATAACGAAGTGCATGATCTCCGAGATCTGCGGGAAG CAGCACGAGAAGGTTGGAATGGGCTACGTCACAGGTAAAAGTCTAAGCCA CTGTTGTGCTTGGGTAAGTATAATTGGAACTCAGGACATGTGGCTAGACG TCCCGCACCTCATTCTTGTGTTTTCTATGTTTCTACTGTCAGGACGCCAA TCCCCAGTAGAGCTTTGCTAGGGTTATTCCGGGGTTGGGGTAGGGTTAGT TTTGCAGTATGTCGGCTCGGGGAAACGAACGTCATCATTCCTGTTCCACA TTTCCTAAACGAGGAGCACACACACAACCACATTTTCGATGCATGAGTGA GGATGCTTTTTAGAGGTTGCGAAGAGGTTTGCTGCAGTCTACAGTACCAC CTACATCTTATATGGACTGCACGAACCTCATAGCGCCGGAATGATTTTCC TTCTCCCTTCCGTGCACACAAGATGTTTGAGGCGTTTCGTCTGAGTTCGA AGAGCTTGTTTAGTGCGACTGTCTTGGGTTTCGACGGATATGTAAGCGTG GGCGCCTTGGTTCTCAAGCAATGCCCTCGAAGTAAACCAAAACTCGCTCT TTTTATCTCACAAGGTTCGCGATTTTTACGGAGTTTTGCAGTTGGGCGTA GGCCGAGTCGTCCCTCTTCCCCAAGACGCCCGTGTGTCCAATCTTCTTTC AACTGGATATTCCCTCTGCAAAACTCAGGCACGTATGAGAAAAAGAGGCT CCACAGTGTCAGCACATCTCGCTGGTCCTGCATTCTTCCAGAGAAGGGCT AATCTACGTTATAGGTGGAGCACTGTTGGCGGTCCAGGGCCTCCTGCACA TCCAGGCCGCAGTCGAACCGGATTGGATCACGTTGGAGTGCGCCCGTGTC AACAGCTGGAGCCACGGATCTACCTAGCAAGCTTGCCTCTTTCAGGCCAG CGACGCATGCACAAACTGGCGGAGGCGCGACCGGAGGTCCTCATCGGCAA TGCCTGCCGCCGATACAACGCTCACAGCCAGGGAGAGAATGCCGTGTGCC AGGCGACGGTTTTATCATCGCCTGGCGCGCGGCCTTCTCTCCCTGGCTGT GAGTGTTGTATCGGCGGCAGGCATTGCCGATGAGGATCTCCGGTCGTGCC TCCGCCAGTGGGTGTATGGTTTGCTCGCCCGAAAATAGTCGAGCGTATCA GGTGGATTCCCTGGCTCCAGCTGTTGACACGGGCGCACTCCAATGTGATC CAATGCTCTACGTCATCACCAAGTTACACACTCTCACCTGCACAGATTTT GTAACAGCTGTTCTCTATGAGTTCGATTGAAGACTGCCAAGCGTTCAATC ATCACAGCATAAGCGAGCAAGCTGCAGTGCTCCAAGCGTGCATGCAATTC CAACTCCTCCGGTACAGCACTCCATCATCCAGTCGGTCATGCGTGGTCAT CACTCACGGTCGCGAATACGGCTCCATAGCGCTCAGATCAGAACATCTGC TTTCCCTTCTCTGGCGTCGTGAAAGTCGTTGGTCTTGCATATCTTCCATC GTTTCTTGGCTCTGTTCTCGACTCTTTTTCAAAATATTTGACTGTACACG TCCAAGTATGTATCATAATCGTCGCAGCATCATCGAACGTTAAATCTAAC CGTAGAATTGTTTTTGAATCCCGTATACTCATCACTGGCACAATTTAAGG GGCGATGGAGAACCATCGTAGTGTCAGTGCTTTTCGGGACTCAACCACCA GTGTTTGAGGTATATTTCTTGGTTCTACGGCGGTACGAACAACGCTCTGC GTGCGGGCAAGTCCATGACGGATCCCCTAATGACGCCAACCAGCCCGTGC ATCAAACAGCAGGCCATCCGAATCTAAGATGTTACTCGTCACACTTGCCG ATCAAGGTTGCTGGTCCTTTGGCCTCGTCATCGGCCCGGCCTTCGGAGGT CTACTGGCCCAACCAGCAACGCACTACCCGAACGTCTTTTCGGAGTCGGG GCTGTTCGGAAGGTTCGTCTATTAGCATACGTGTGTTTTAGGTAGCGTGT CGTTTGTTGCTTAAACGCTGTGCGGCGAGGTTTCTTCATTCCACATGTAG TTGTGAAGCCTCACAAGTTTGGGACCCTCACAAGTTTGCCAGAGAACCTC CCGGGTTCCCTGGAGCGAACGGGATCGAGGGAATCCCTGCGGAAACACAA CATCACTTGGTGCCAAAAACGAACTTTTCAAGCGGGAAGCGATTGTACTT CCGTCAGGGGAGATCAATGTTGTCCGTTTAGCATTCCTGTAAGTAGTTGC ACGTTCTCGGCGTACAGAGCGCTCTTAGCTCTTAGCTCTTAGCTCATAGC TCTTAGCTCTTAGGGTTAACCTCTTAGCGAGAGCTGTTTCTACTGTACGT TAGTGATACCATGCCATACCCATGGTAGATGGCATTGACAACCTACATCG CTGTCGGCCCTCCACCCATCTAGGTACCCCTACCTGCTTCCGAACGTGGT CGGGGCGAGTATAGCCTTCAGCGGTTTGCCCATGGTGTTTTTTTTCCTTA AGGAGACCACAAGCTTGGACGACGGCAGGAGCGCAACCGATAGCAGGTCA GGAGATACGCGATGAAACCATGCCCGTTCAAGGCAGACACCGGACAGGCA TGAAACCTGGTAGCAGCGATGGACGACGAATATAACAATATAAATTCAAT TGTGCAGTGAAATCGGCATTTCAGAAAATGCCGCACGTTCGCGTTAGCCG GCGTCCCGTCGCGTTAGTCCTTGGTTTGTTGTAGCATTAAACGCCTTCAG GTGCCGTGATGCGCGTGGCCCTATCCCTCCCCTCTCCAGCATCTGATGCT ATTGCTGTGATGCGTGTTTGTCGGTGCACCCCTGAACAACGTTCCCTAGC ATCGTTCCTTCGTCTGGGTCATTGCGGACATGAAAATTAAGGTCTGTGGA AGCCTCGTTTGTGATGACCTGGCGTGCTTTTCAATAGCGCCCCCTTCTCC TCTCCCTGGCACCGCGCGTTAACCATAGGGTCGGGTTCGATCCTGTCGCG ACATCAGAACCGAGCCCTCTCCTGGAAACCCAGGAATCGGGGATGGAAGA GGGGAGGGGCGGGCAGCTTGAGTTGACTCCGCTGACGCAGTCGAATTCTC TGGATGACGTGGACGACGACGACGACCACGCCGACGAGCATCTGGCCGAA CTTCTCGAGGAACGTTCTGAGGAATGCTCCTCGGCAAGGGCTACGGTTTC AAACGCCGCTGGTGGTGATGGTAGCGGACACATCGCCGTCGTGCCTGATT CGAAGGGTCGTGGAGCTAGTTCTGCCCGGGAGAAATTGATCGGCGGCGCA ATCAATATCGCTAGCAACGACAGGGCTACGCTTGGAGACGCAAGCGAAAC CGCTAGCAAGATCGATACTGATCGTTACGGCGTTGGTAATAGTTTTGGGG ACGGCGGAAGCAACCGCAACGGCAGCGGAGATCGATTTTTGCAGCCTCCG AGGGAGGCACCCAGTGGAGGAGCATCGCTTTCATCTCCAGTTGGATTGAG TGAGACACTGGGCTTTGCGGGCAGTACCAAGGGAACTCCTAGTGGAAGAC GAGGCCACATCGGAAACGACTCGGGGAAAAGGGTCACCGGATTCAGCACC CAAGACGGTGGTGACACGAGTTGTGCCGCCGGAGAGAGCCAAACAGCTAC GCGTACAAGCGCGGTCTGGCGAGAGTGTCTCGTCCCGGTTAGGCTGCTGG AGGAGAAGCGTGTCCGCGCCATTCTCTTCGTGTACGGCATCTACTCGGTG AGCAAGCAACTCTGTGCCTTTTTGAGCACGGCGTTTAAAATGTGATTACG CTCAACGTGGGGACGGTGTTGTTCTTCCAACCTGCACAGAGATGGTATCT ACCACGTGCAAGATTCGTCATGCTTTTCTCGGTCGCCCCCGTAAATGTCG CTCGATGGTTACGCGAGTTCGAACGAGTGCAGTCAACACAAGAACTCTCG TATCACCCGTATACTCAGTGGCACGTCCGATTATGTGCTACTCTGCAGGA AACACGACGCCTCGGTCACACACATCTCCCAGCGTGTGTTTTCACCGCGC TTCGCCCCAAACACGATACTCTTGACGCACCCTCAAGAACAATCATGGGC TCATACTCTCCACAATGAAGGTTCTTCCAAGATTTTCCATTCCAGATGGA AATCGAATGCCCTCTCAAAGATTCAACTACAGGATCAACCAATGTTGGTT GACACTCAAGTATGTTTGTGATGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5697:2..7275-

>mRNA_Ecto-sp13_S_contig5697.16072.1 ID=mRNA_Ecto-sp13_S_contig5697.16072.1|Name=mRNA_Ecto-sp13_S_contig5697.16072.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1476bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5697:2..7275- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGACTCCTTTTCCATGGCTGCCGATGCTCGCCCTCGCGATCGGCCT
CGTGAGCCATTCGTACTCCCTGTCAAGCCTTTTCCCCTACGTGGGGTACA
TGGTGCAGCACCTCGGGGTCACCGACGACAAGGATGAGGCAGGATACTAC
GCCGGCTACCTGGCGTCCGCCTTCATGGTTGGTCGGTTCGCCACCTCGTA
CTTTTGGGGCCGCTTCGCAGACCGCTACGGGCGGCTGCCGGTGGTGTACA
TCGGACTCAGCTCCATCGGCGTCCTGTCTTTGGCTTTCGGGCTGTCGACC
GCCTTCTGGTGGGCCCTCACTTGCCGGTTTCTCCTGGGAGCGATGAACGG
CCTCATAGCTATAACGAAGTGCATGATCTCCGAGATCTGCGGGAAGCAGC
ACGAGAAGGTTGGAATGGGCTACGTCACAGGTTGCTGGTCCTTTGGCCTC
GTCATCGGCCCGGCCTTCGGAGGTCTACTGGCCCAACCAGCAACGCACTA
CCCGAACGTCTTTTCGGAGTCGGGGCTGTTCGGAAGGTACCCCTACCTGC
TTCCGAACGTGGTCGGGGCGAGTATAGCCTTCAGCGGTTTGCCCATGGTG
TTTTTTTTCCTTAAGGAGACCACAAGCTTGGACGACGGCAGGAGCGCAAC
CGATAGCAGGGTCGGGTTCGATCCTGTCGCGACATCAGAACCGAGCCCTC
TCCTGGAAACCCAGGAATCGGGGATGGAAGAGGGGAGGGGCGGGCAGCTT
GAGTTGACTCCGCTGACGCAGTCGAATTCTCTGGATGACGTGGACGACGA
CGACGACCACGCCGACGAGCATCTGGCCGAACTTCTCGAGGAACGTTCTG
AGGAATGCTCCTCGGCAAGGGCTACGGTTTCAAACGCCGCTGGTGGTGAT
GGTAGCGGACACATCGCCGTCGTGCCTGATTCGAAGGGTCGTGGAGCTAG
TTCTGCCCGGGAGAAATTGATCGGCGGCGCAATCAATATCGCTAGCAACG
ACAGGGCTACGCTTGGAGACGCAAGCGAAACCGCTAGCAAGATCGATACT
GATCGTTACGGCGTTGGTAATAGTTTTGGGGACGGCGGAAGCAACCGCAA
CGGCAGCGGAGATCGATTTTTGCAGCCTCCGAGGGAGGCACCCAGTGGAG
GAGCATCGCTTTCATCTCCAGTTGGATTGAGTGAGACACTGGGCTTTGCG
GGCAGTACCAAGGGAACTCCTAGTGGAAGACGAGGCCACATCGGAAACGA
CTCGGGGAAAAGGGTCACCGGATTCAGCACCCAAGACGGTGGTGACACGA
GTTGTGCCGCCGGAGAGAGCCAAACAGCTACGCGTACAAGCGCGGTCTGG
CGAGAGTGTCTCGTCCCGGTTAGGCTGCTGGAGGAGAAGCGTGTCCGCGC
CATTCTCTTCGTGTACGGCATCTACTCGGTGAGCAAGCAACTCTGTGCCT
TTTTGAGCACGGCGTTTAAAATGTGA
back to top