prot_Ecto-sp13_S_contig5693.16069.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5693.16069.1
Unique Nameprot_Ecto-sp13_S_contig5693.16069.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length36
Homology
BLAST of mRNA_Ecto-sp13_S_contig5693.16069.1 vs. uniprot
Match: D7G5I6_ECTSI (RRP7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5I6_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 4.410e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0
Query:    1 MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 35
            MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF
Sbjct:  295 MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 329          
BLAST of mRNA_Ecto-sp13_S_contig5693.16069.1 vs. uniprot
Match: A0A835Z5W2_9STRA (Ribosomal RNA-processing protein 7-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5W2_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 9.640e-6
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 35
            MRE +REQLATLR KFEQDKA++ +MK  RKF+PF
Sbjct:  242 MREAKREQLATLREKFEQDKAKIERMKAARKFKPF 276          
BLAST of mRNA_Ecto-sp13_S_contig5693.16069.1 vs. uniprot
Match: UPI001E1DA8E3 (ribosomal RNA-processing protein 7 homolog A-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA8E3)

HSP 1 Score: 47.4 bits (111), Expect = 4.680e-5
Identity = 24/35 (68.57%), Postives = 29/35 (82.86%), Query Frame = 0
Query:    1 MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 35
            MRET+REQ+A LR KFE+DK R+A MK  RKFRP+
Sbjct:  237 MRETKREQIANLRKKFEEDKQRIALMKASRKFRPY 271          
BLAST of mRNA_Ecto-sp13_S_contig5693.16069.1 vs. uniprot
Match: A0A4D9DEJ8_9STRA (RRM domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEJ8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 4.840e-5
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 0
Query:    1 MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF 35
            MRE +REQLA LR++FE+DKAR+ KMK  RKF+PF
Sbjct:  274 MREAKREQLARLRTRFEEDKARIEKMKAARKFKPF 308          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5693.16069.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G5I6_ECTSI4.410e-11100.00RRP7 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z5W2_9STRA9.640e-671.43Ribosomal RNA-processing protein 7-domain-containi... [more]
UPI001E1DA8E34.680e-568.57ribosomal RNA-processing protein 7 homolog A-like ... [more]
A0A4D9DEJ8_9STRA4.840e-568.57RRM domain-containing protein n=2 Tax=Monodopsidac... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
IPR024326Ribosomal RNA-processing protein 7, C-terminal domainPFAMPF12923RRP7coord: 1..35
e-value: 3.3E-11
score: 43.4
IPR040446Ribosomal RNA-processing protein 7PANTHERPTHR13191RIBOSOMAL RNA PROCESSING PROTEIN 7-RELATEDcoord: 2..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5693contigEcto-sp13_S_contig5693:8708..8815 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5693.16069.1mRNA_Ecto-sp13_S_contig5693.16069.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5693 8708..8824 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5693.16069.1 ID=prot_Ecto-sp13_S_contig5693.16069.1|Name=mRNA_Ecto-sp13_S_contig5693.16069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
MRETRREQLATLRSKFEQDKARVAKMKEQRKFRPF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024326RRP7_C
IPR040446RRP7