mRNA_Ecto-sp13_S_contig569.16063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FY55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY55_ECTSI) HSP 1 Score: 208 bits (530), Expect = 1.880e-67 Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = 1
Query: 1 QQRDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFD 351
Q RDGFHPR+STTTDATL GFIR I+G LTEVP+ISG TV+ LA GSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGK +AGTLVNNIVEAIAEKVEVMM GVY PEDFD
Sbjct: 8 QLRDGFHPRRSTTTDATLAGFIRAPITGVLTEVPFISGGTVQALAGGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKNVAGTLVNNIVEAIAEKVEVMMTGVYTPEDFD 124
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FY54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY54_ECTSI) HSP 1 Score: 128 bits (321), Expect = 1.150e-35 Identity = 64/118 (54.24%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 4 QRDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFDQK 357
+R FHPRKS D TL FIR I+G LTEVP I T + LA G EPI THQL GKFLALSP P+C EHC+ F WL K + +N+IVEAIAEK + +PGVY+ + F +K
Sbjct: 5 ERIPFHPRKSVIRDETLAEFIRAGITGTLTEVPGIGVATKKALAEGDEPIKTTHQLFGKFLALSPDEPDCEEHCNSFKFWLQDKNVGNGQLNSIVEAIAEKAQTWIPGVYDADTFKEK 122
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: A0A6H5JXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL8_9PHAE) HSP 1 Score: 122 bits (307), Expect = 1.580e-33 Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 7 RDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFDQK 357
R FHPR+STT+D L FI I+G TEVP I T+E LARG EPI THQL G FLALSP P+C EHC+RF WL K + ++ IVEAIAEK + +PGV++ + F ++
Sbjct: 7 RTPFHPRRSTTSDNQLAEFIAGPITGITTEVPGIGLVTMETLARGDEPINRTHQLFGIFLALSPDEPDCAEHCNRFKYWLQDKNVGPRFLDEIVEAIAEKTQTWIPGVFSADAFPEE 123
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FY53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY53_ECTSI) HSP 1 Score: 118 bits (296), Expect = 5.650e-32 Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 31 STTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPG 327
+TT D L FIR +I G+L+EVP I+ T + LA+G EPI THQLIGKFLALSP P+ VEHC+RF WL K +A L+NNIVEAIAEK E ++PG
Sbjct: 15 TTTRDDALAEFIRAKIEGNLSEVPSIAEATTKELAKGDEPIKTTHQLIGKFLALSPDEPDGVEHCNRFKYWLQDKNVANHLLNNIVEAIAEKTECLIPG 113
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 4.130e-24 Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 13 GFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLA--RGSEPITNTHQLIGKFLAL-----SPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
G+ P++S +D L FIR+ ++GDLTEVP I+ + E+LA G + +TNT+QLIGKFLAL + + VEHCD+F+ WL K I + IV AIAEKV +PG+Y+ + +
Sbjct: 5 GYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNR-SGIVNAIAEKVNTWIPGIYDADSY 122
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: M4BRS7_HYAAE (Uncharacterized protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4BRS7_HYAAE) HSP 1 Score: 95.1 bits (235), Expect = 1.340e-22 Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLAR----GSEPITNTHQLIGKFLALSPQRPN-------CVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
DG+ P+KS + TL F+R ++GDLTEVP I V L+ G+E +TNT QLIGKFL L + C HCD F+ WL K I + IV AIAEKV M+PG+Y+ DF
Sbjct: 3 DGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVTKLSEASEDGNEAVTNTFQLIGKFLMLKENSDDNDDGVIDCAAHCDAFWFWLKSKGITAYR-SGIVMAIAEKVNTMLPGIYDAADF 125
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: A0A2D4C4D0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D0_PYTIN) HSP 1 Score: 92.4 bits (228), Expect = 1.450e-21 Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 1
Query: 10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEP--ITNTHQLIGKFLALSPQRP-------NCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
+G+ P+KS + TL F+R ++GDLTEVP I V LA G E + NT QLIGKFL L +C EHCD F+ WL K I + IV AIAEKV M+PG+Y+ +F
Sbjct: 3 EGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVGKLAAGEEGDRVENTFQLIGKFLMLKQSTDKNEDGLIDCAEHCDAFWYWLKSKGIQAYR-SGIVMAIAEKVNTMLPGIYDAAEF 123
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D0P1T3_PHYIT (Uncharacterized protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0P1T3_PHYIT) HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21 Identity = 53/123 (43.09%), Postives = 68/123 (55.28%), Query Frame = 1
Query: 10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLAR---GSEPITNTHQLIGKFLALSPQRPN-------CVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
DG+ P+KS + TL F+R ++GDLTEVP I V L G + +TNT QLIGKFL L + C HCD F+ WL K I + IV AIAEKV M+PG+Y+ +F
Sbjct: 3 DGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVAKLGEAEDGEDAVTNTFQLIGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYR-SGIVMAIAEKVNTMLPGIYDAAEF 124
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: W4H2H6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4H2H6_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21 Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEP---ITNTHQLIGKFLALSPQRPN------CVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFD 351
DG+ P KS D TL F+R ++G LTEVP I + LA+G +P ITNT QL+GKF+ L + C HCD F+ WL K I+ + + IV AIAEK+ M+PGVY+ DF+
Sbjct: 4 DGYDPAKSRIADDTLADFLRAPLTGVLTEVPGIGPAAAKNLAKGDDPADQITNTFQLMGKFMLLKRNEDDTDEPIDCRTHCDAFWHWLKSKGIS-SYRSGIVMAIAEKMNTMIPGVYDACDFN 125
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21 Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 13 GFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLA--RGSEPITNTHQLIGKFLAL-----SPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFD 351
G+ P++S TD L FIR I+G+LTEVP I V+ LA GS + NT+QLIGKFL+L S + +EHCDRF+ WL I+ + + IV AIAEK +PG+Y+ + +D
Sbjct: 6 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGIS-SYRSGIVNAIAEKCNTWIPGIYDEDQYD 124 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig569.16063.1 >prot_Ecto-sp13_S_contig569.16063.1 ID=prot_Ecto-sp13_S_contig569.16063.1|Name=mRNA_Ecto-sp13_S_contig569.16063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp QQRDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPback to top mRNA from alignment at Ecto-sp13_S_contig569:15769..17409- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig569.16063.1 ID=mRNA_Ecto-sp13_S_contig569.16063.1|Name=mRNA_Ecto-sp13_S_contig569.16063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig569:15769..17409- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig569:15769..17409- >mRNA_Ecto-sp13_S_contig569.16063.1 ID=mRNA_Ecto-sp13_S_contig569.16063.1|Name=mRNA_Ecto-sp13_S_contig569.16063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig569:15769..17409- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |