mRNA_Ecto-sp13_S_contig569.16063.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig569.16063.1
Unique NamemRNA_Ecto-sp13_S_contig569.16063.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FY55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY55_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 1.880e-67
Identity = 101/117 (86.32%), Postives = 106/117 (90.60%), Query Frame = 1
Query:    1 QQRDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFD 351
            Q RDGFHPR+STTTDATL GFIR  I+G LTEVP+ISG TV+ LA GSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGK +AGTLVNNIVEAIAEKVEVMM GVY PEDFD
Sbjct:    8 QLRDGFHPRRSTTTDATLAGFIRAPITGVLTEVPFISGGTVQALAGGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKNVAGTLVNNIVEAIAEKVEVMMTGVYTPEDFD 124          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FY54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY54_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.150e-35
Identity = 64/118 (54.24%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    4 QRDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFDQK 357
            +R  FHPRKS   D TL  FIR  I+G LTEVP I   T + LA G EPI  THQL GKFLALSP  P+C EHC+ F  WL  K +    +N+IVEAIAEK +  +PGVY+ + F +K
Sbjct:    5 ERIPFHPRKSVIRDETLAEFIRAGITGTLTEVPGIGVATKKALAEGDEPIKTTHQLFGKFLALSPDEPDCEEHCNSFKFWLQDKNVGNGQLNSIVEAIAEKAQTWIPGVYDADTFKEK 122          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: A0A6H5JXL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXL8_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.580e-33
Identity = 61/117 (52.14%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    7 RDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFDQK 357
            R  FHPR+STT+D  L  FI   I+G  TEVP I   T+E LARG EPI  THQL G FLALSP  P+C EHC+RF  WL  K +    ++ IVEAIAEK +  +PGV++ + F ++
Sbjct:    7 RTPFHPRRSTTSDNQLAEFIAGPITGITTEVPGIGLVTMETLARGDEPINRTHQLFGIFLALSPDEPDCAEHCNRFKYWLQDKNVGPRFLDEIVEAIAEKTQTWIPGVFSADAFPEE 123          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FY53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY53_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 5.650e-32
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   31 STTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEPITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPG 327
            +TT D  L  FIR +I G+L+EVP I+  T + LA+G EPI  THQLIGKFLALSP  P+ VEHC+RF  WL  K +A  L+NNIVEAIAEK E ++PG
Sbjct:   15 TTTRDDALAEFIRAKIEGNLSEVPSIAEATTKELAKGDEPIKTTHQLIGKFLALSPDEPDGVEHCNRFKYWLQDKNVANHLLNNIVEAIAEKTECLIPG 113          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D7FQ44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ44_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.130e-24
Identity = 53/119 (44.54%), Postives = 76/119 (63.87%), Query Frame = 1
Query:   13 GFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLA--RGSEPITNTHQLIGKFLAL-----SPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
            G+ P++S  +D  L  FIR+ ++GDLTEVP I+ +  E+LA   G + +TNT+QLIGKFLAL     +    + VEHCD+F+ WL  K I     + IV AIAEKV   +PG+Y+ + +
Sbjct:    5 GYDPKRSKVSDDKLAEFIRSAVTGDLTEVPGIAARGAEILADGEGDDKVTNTYQLIGKFLALRGPDKTDHEVDSVEHCDKFWYWLQAKGINSNR-SGIVNAIAEKVNTWIPGIYDADSY 122          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: M4BRS7_HYAAE (Uncharacterized protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4BRS7_HYAAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.340e-22
Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLAR----GSEPITNTHQLIGKFLALSPQRPN-------CVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
            DG+ P+KS   + TL  F+R  ++GDLTEVP I    V  L+     G+E +TNT QLIGKFL L     +       C  HCD F+ WL  K I     + IV AIAEKV  M+PG+Y+  DF
Sbjct:    3 DGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVTKLSEASEDGNEAVTNTFQLIGKFLMLKENSDDNDDGVIDCAAHCDAFWFWLKSKGITAYR-SGIVMAIAEKVNTMLPGIYDAADF 125          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: A0A2D4C4D0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D0_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 1.450e-21
Identity = 54/122 (44.26%), Postives = 69/122 (56.56%), Query Frame = 1
Query:   10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEP--ITNTHQLIGKFLALSPQRP-------NCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
            +G+ P+KS   + TL  F+R  ++GDLTEVP I    V  LA G E   + NT QLIGKFL L            +C EHCD F+ WL  K I     + IV AIAEKV  M+PG+Y+  +F
Sbjct:    3 EGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVGKLAAGEEGDRVENTFQLIGKFLMLKQSTDKNEDGLIDCAEHCDAFWYWLKSKGIQAYR-SGIVMAIAEKVNTMLPGIYDAAEF 123          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: D0P1T3_PHYIT (Uncharacterized protein n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0P1T3_PHYIT)

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21
Identity = 53/123 (43.09%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLAR---GSEPITNTHQLIGKFLALSPQRPN-------CVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDF 348
            DG+ P+KS   + TL  F+R  ++GDLTEVP I    V  L     G + +TNT QLIGKFL L     +       C  HCD F+ WL  K I     + IV AIAEKV  M+PG+Y+  +F
Sbjct:    3 DGYDPQKSRVAEDTLADFLRAPLTGDLTEVPGIGKAAVAKLGEAEDGEDAVTNTFQLIGKFLMLKANSDDNDDGVIDCAAHCDAFWFWLKSKGITAYR-SGIVMAIAEKVNTMLPGIYDAAEF 124          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: W4H2H6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4H2H6_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 1
Query:   10 DGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEP---ITNTHQLIGKFLALSPQRPN------CVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFD 351
            DG+ P KS   D TL  F+R  ++G LTEVP I     + LA+G +P   ITNT QL+GKF+ L     +      C  HCD F+ WL  K I+ +  + IV AIAEK+  M+PGVY+  DF+
Sbjct:    4 DGYDPAKSRIADDTLADFLRAPLTGVLTEVPGIGPAAAKNLAKGDDPADQITNTFQLMGKFMLLKRNEDDTDEPIDCRTHCDAFWHWLKSKGIS-SYRSGIVMAIAEKMNTMIPGVYDACDFN 125          
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Match: A0A835Z4N7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4N7_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.100e-21
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1
Query:   13 GFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLA--RGSEPITNTHQLIGKFLAL-----SPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIAEKVEVMMPGVYNPEDFD 351
            G+ P++S  TD  L  FIR  I+G+LTEVP I    V+ LA   GS  + NT+QLIGKFL+L     S +    +EHCDRF+ WL    I+ +  + IV AIAEK    +PG+Y+ + +D
Sbjct:    6 GYDPKRSKVTDEKLAEFIRQPITGELTEVPGIGPAAVKKLAAGEGSNKVANTYQLIGKFLSLKGGDDSGKTIQTIEHCDRFWYWLKEMGIS-SYRSGIVNAIAEKCNTWIPGIYDEDQYD 124          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig569.16063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY55_ECTSI1.880e-6786.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY54_ECTSI1.150e-3554.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXL8_9PHAE1.580e-3352.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FY53_ECTSI5.650e-3259.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQ44_ECTSI4.130e-2444.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
M4BRS7_HYAAE1.340e-2244.35Uncharacterized protein n=7 Tax=Peronosporaceae Ta... [more]
A0A2D4C4D0_PYTIN1.450e-2144.26Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
D0P1T3_PHYIT2.100e-2143.09Uncharacterized protein n=18 Tax=Peronosporaceae T... [more]
W4H2H6_9STRA2.100e-2143.90Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A835Z4N7_9STRA2.100e-2144.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig569contigEcto-sp13_S_contig569:15769..17409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score101.3
Seed ortholog evalue3.3e-19
Seed eggNOG ortholog2880.D7FQ44
Model size404
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2ARS8@1,2RZN0@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_003730.1
Cds size363
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.6735916-UTR-Ecto-sp13_S_contig569:15768..158091681463787.6735916-UTR-Ecto-sp13_S_contig569:15768..15809Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig569 15769..15809 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463787.6889422-CDS-Ecto-sp13_S_contig569:15809..158471681463787.6889422-CDS-Ecto-sp13_S_contig569:15809..15847Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig569 15810..15847 -
1681463787.7002666-CDS-Ecto-sp13_S_contig569:16246..163671681463787.7002666-CDS-Ecto-sp13_S_contig569:16246..16367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig569 16247..16367 -
1681463787.7114332-CDS-Ecto-sp13_S_contig569:16850..169581681463787.7114332-CDS-Ecto-sp13_S_contig569:16850..16958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig569 16851..16958 -
1681463787.7327013-CDS-Ecto-sp13_S_contig569:17313..174091681463787.7327013-CDS-Ecto-sp13_S_contig569:17313..17409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig569 17314..17409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig569.16063.1prot_Ecto-sp13_S_contig569.16063.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig569 15810..17409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig569.16063.1

>prot_Ecto-sp13_S_contig569.16063.1 ID=prot_Ecto-sp13_S_contig569.16063.1|Name=mRNA_Ecto-sp13_S_contig569.16063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=121bp
QQRDGFHPRKSTTTDATLVGFIRTRISGDLTEVPYISGQTVEVLARGSEP
ITNTHQLIGKFLALSPQRPNCVEHCDRFYKWLLGKKIAGTLVNNIVEAIA
EKVEVMMPGVYNPEDFDQKR*
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mRNA from alignment at Ecto-sp13_S_contig569:15769..17409-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig569.16063.1 ID=mRNA_Ecto-sp13_S_contig569.16063.1|Name=mRNA_Ecto-sp13_S_contig569.16063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1641bp|location=Sequence derived from alignment at Ecto-sp13_S_contig569:15769..17409- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAACGAGATGGCTTCCACCCGAGGAAGAGCACGACTACGGACGCCAC CCTTGTTGGATTCATCCGTACCCGGATCAGTGGAGACCTAACCGAGGTGC CGAAGAATTATGAACATTTAGTGCTACAAGTATAATATTCAGTCTAGCAT AGTTTAAACTTTAGGCTGTGCGACGCGGTCATTTCAGTCAATTATTGCCA GTTGGCGTTCCTGTTTCAGCTAACTGGCAGACTGCCGCCGCCTTTTGTTC ATTAACGGTGTGTACGACATTCTCCACCTTTGCCAAACAGGCCCAGAGTG TTAAATGTCGTTTGTATATGTGGTCGAGTTTCTCACAAGTGAACCTGCGG TCTTTCATGCGAATATGCAGCAGGAAATACATGCAGTTGGCTAATAACGC TGTGATACTCGAATACGATGCTTATGTCTTGGCCGGTGCGAAAAAAACTA GGTACCTTACATCTCCGGACAAACTGTGGAGGTGCTGGCTAGAGGAAGCG AACCCATCACCAACACCCACCAGCTGATCGGAAAGTTTCTGGCACTATCC CCCCAAAGGGTATGTTGCGGATGTCGCTGCTGTGGTGCTCTGATGGAGCC GCGATCATGCCAAAGTTGATAAACAAGTCGAATTCGAGAGATGACCACCG GGTGAAAATTTCGCATCCGCCACCATAGTTGGAGCCTAACAATGACCTAG GACCAAGTCAAGGTCGGGGGTGGGTACAGGTGTGAGTACCCGTAGGTGAA ATGACGTTGTTGTACCGATCAGTCCACCAATCAGCTACATTAGATAAAAA ATATTAAATTTTGCACACATGCGTCGAAAAAAAAAGGTTATGGAAGTGCG CCATCGGCGAAGGTGGGCACCGCTCCTCGATTCTCACACTGCCAAACACC TCCTCATTTGTTGTAGACACATTTCTCTGCCTAGCTGTGACAGAAATATT CCTAGTCGAGGAATTCACATGAAAGGTACCGTGCTTTGAATTTTCGAACT CCCTACGGTGATTTCGGGCGCTGCCGTACTGCTGCATGCAAGCCGAACTG CGTGGAGCACTGCGACCGGTTCTACAAATGGCTCCTTGGCAAGAAAATTG CCGGCACCTTGGTCAACAACATTGTCGAGGCGATTGCCGAGAAGGTTGAA GTTATGATGCCTGGTGAGTTTTTGGGAGTCCATCGATGAACATGCCCGCG CAGGCTCACCCTACCCAAGAGAACGTCGCACGTGAGCTACTATAGCCTGT CAGACAACCATGAGCAATCATGGGTCATTGGCAATTATGGGCGATTACGA TTCAAGCATTCGTCGTGTGCTTCTCTCCGCCCCCGCCCCCCCATCTTGGT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACGATTCCTTCCTCTTT CATATCCCACTGAGTTACCGAAGTATCGCCCTTTCCTACGCATGTGTTCT ACATGTGACTGTCTGTATCGCACACTTCTTGTAACCGCAAGGTCCACGTC TGTACGTGAGTTTGTTGCTGACGCGTTTCTCATTGCCCTCTTTCTGCCAA CCTCGTTCTCAGGAGTCTACAATCCTGAAGACTTCGACCAGAAGCGCTAA ACCAAACGGGGGCCGAAGTCTTTCGGGCATGGGGCAGAAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig569:15769..17409-

>mRNA_Ecto-sp13_S_contig569.16063.1 ID=mRNA_Ecto-sp13_S_contig569.16063.1|Name=mRNA_Ecto-sp13_S_contig569.16063.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=363bp|location=Sequence derived from alignment at Ecto-sp13_S_contig569:15769..17409- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCAACGAGATGGCTTCCACCCGAGGAAGAGCACGACTACGGACGCCAC
CCTTGTTGGATTCATCCGTACCCGGATCAGTGGAGACCTAACCGAGGTAC
CTTACATCTCCGGACAAACTGTGGAGGTGCTGGCTAGAGGAAGCGAACCC
ATCACCAACACCCACCAGCTGATCGGAAAGTTTCTGGCACTATCCCCCCA
AAGGCCGAACTGCGTGGAGCACTGCGACCGGTTCTACAAATGGCTCCTTG
GCAAGAAAATTGCCGGCACCTTGGTCAACAACATTGTCGAGGCGATTGCC
GAGAAGGTTGAAGTTATGATGCCTGGAGTCTACAATCCTGAAGACTTCGA
CCAGAAGCGCTAA
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