mRNA_Ecto-sp13_S_contig5679.16042.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5679.16042.1
Unique NamemRNA_Ecto-sp13_S_contig5679.16042.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5679.16042.1 vs. uniprot
Match: D7FT88_ECTSI (Putative glutamate/ornithine acetyltransferase (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT88_ECTSI)

HSP 1 Score: 364 bits (934), Expect = 5.140e-118
Identity = 216/251 (86.06%), Postives = 218/251 (86.85%), Query Frame = 1 
Query:    1 ENIFLASRLTTNAFKTWSQAGVSMDGVTDLLRIFGNERYMLAYTEKKKRRRQAKGIIRARXXXXXXXXGRAAPRGILSVILHRDATGADTVKSLLALEYLQDELKQAGFEVVGAPPAARSGGRATAPAAKTRPINGDGSPAVAEPAVAAAAVTRGAPSPXXXXXXXXXXXXXXXXTRSSGGTAPVLSAARAGGAESERPQPSSAELCRCLEAARRRAEEGAPGFFAALETLGWSTEKFMFGNIKSRVEWRS 753
            ENIFLASRLTTNAFKTWSQAGVSMDGVTDLLRIFGNERYMLAYTEKK RRRQAK IIRAR         RAAPRGI+SVILHRDATGADTVKSLLALEYLQDELKQAGFEVVGAPPAARSGGRA  PAAKTRP+NGDGSPAVAEPA  AAAVTRG    XXXXXXX          RSSGG APVLSAA AG AESERPQPSSAEL RCLEAARRRAEEGAPGFFAALETLGWSTEKFMFGNIKSRVEWRS
Sbjct:  543 ENIFLASRLTTNAFKTWSQAGVSMDGVTDLLRIFGNERYMLAYTEKK-RRRQAKRIIRARAGDGGGGD-RAAPRGIVSVILHRDATGADTVKSLLALEYLQDELKQAGFEVVGAPPAARSGGRAMPPAAKTRPVNGDGSPAVAEPA--AAAVTRGVXXXXXXXXXXGEAASGAPTPRSSGGAAPVLSAAGAGRAESERPQPSSAELRRCLEAARRRAEEGAPGFFAALETLGWSTEKFMFGNIKSRVEWRS 789
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5679.16042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT88_ECTSI5.140e-11886.06Putative glutamate/ornithine acetyltransferase (IS... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5679contigEcto-sp13_S_contig5679:7774..8953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score367.9
Seed ortholog evalue3.9e-99
Seed eggNOG ortholog2880.D7FT88
Model size756
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to UV-B
EggNOG OGsKOG4249@1,KOG4249@2759
Ec32 ortholog descriptionputative glutamate/ornithine acetyltransferase (ISS)
Ec32 orthologEc-06_003690.1
Cds size756
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463785.875832-CDS-Ecto-sp13_S_contig5679:7773..84721681463785.875832-CDS-Ecto-sp13_S_contig5679:7773..8472Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 7774..8472 -
1681463785.886006-CDS-Ecto-sp13_S_contig5679:8896..89531681463785.886006-CDS-Ecto-sp13_S_contig5679:8896..8953Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5679 8897..8953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5679.16042.1prot_Ecto-sp13_S_contig5679.16042.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5679 7774..8953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5679.16042.1

>prot_Ecto-sp13_S_contig5679.16042.1 ID=prot_Ecto-sp13_S_contig5679.16042.1|Name=mRNA_Ecto-sp13_S_contig5679.16042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=252bp
ENIFLASRLTTNAFKTWSQAGVSMDGVTDLLRIFGNERYMLAYTEKKKRR
RQAKGIIRARAGDGDGGGGRAAPRGILSVILHRDATGADTVKSLLALEYL
QDELKQAGFEVVGAPPAARSGGRATAPAAKTRPINGDGSPAVAEPAVAAA
AVTRGAPSPPPGGAEQGEAASGAPTTRSSGGTAPVLSAARAGGAESERPQ
PSSAELCRCLEAARRRAEEGAPGFFAALETLGWSTEKFMFGNIKSRVEWR
S*
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mRNA from alignment at Ecto-sp13_S_contig5679:7774..8953-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5679.16042.1 ID=mRNA_Ecto-sp13_S_contig5679.16042.1|Name=mRNA_Ecto-sp13_S_contig5679.16042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5679:7774..8953- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACATTTTCTTGGCTTCGAGGTTGACCACAAATGCTTTCAAGACGTG
GTCGCAGGTGTGTTAAAAATTTCTTCCGCTTAATTTGATGGGTTCGCATC
GACTGACTGACCAGCGGGATAAAAAAAACGCCCCAACACGCTGTCTAGGT
GTGTTCGTTTTCGGGATTGTGGAAGTGCGCGAATGCGGGGCGGGAGGTGC
GCACAGGGCGCGTGGGGATTGGTAGGCACAGCATCCGGCCTCTGTGTAGG
GTCGATAGCTTTTTCCGGGCGTTGCGTTGATGTCGCCCTTGTGTTTCGAG
TCGGGAATTCCCGCTACGCGTCCCCCTACCCGCAGTTGCTAGTCCTTTTG
GCGACCCGATCTTCCACGTATACTATCGGGTGTTGTCAAGGTAATGGAAA
TTTTAACCCCAACGGCCTCTGTTGCTCTGTCCATCCGATCTTTGGTGGCG
TGCGCGTTCTTGTGGGTGTCACGGCGAGAAGGCGGGCGTGAGCATGGATG
GCGTTACCGATCTCCTCCGGATCTTCGGGAACGAGCGTTACATGCTGGCG
TACACGGAGAAGAAGAAGAGGAGGAGGCAAGCGAAAGGGATCATCAGAGC
CAGAGCGGGAGATGGCGACGGCGGCGGCGGCAGGGCGGCGCCGAGAGGGA
TACTGAGCGTGATTCTCCACAGAGACGCGACAGGGGCCGACACGGTAAAG
TCTCTCCTAGCGCTCGAGTACCTCCAGGACGAGCTGAAGCAGGCGGGCTT
CGAGGTCGTGGGGGCACCGCCGGCCGCAAGAAGCGGTGGCAGAGCGACAG
CGCCCGCCGCCAAGACGAGACCCATCAACGGCGACGGCTCGCCGGCGGTC
GCGGAGCCGGCGGTGGCGGCGGCGGCGGTCACAAGGGGAGCTCCGTCGCC
GCCGCCAGGCGGCGCTGAGCAGGGGGAAGCGGCGTCGGGGGCACCAACCA
CGAGAAGTAGCGGCGGGACGGCTCCTGTGTTGAGCGCAGCACGGGCGGGG
GGGGCGGAATCTGAGCGACCCCAGCCGTCCTCCGCAGAGCTGTGCCGCTG
CCTGGAGGCCGCACGACGAAGAGCGGAGGAGGGCGCGCCCGGCTTTTTCG
CGGCGCTGGAGACGTTGGGGTGGAGCACGGAGAAGTTCATGTTCGGAAAC
ATCAAGTCGAGGGTGGAGTGGAGATCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5679:7774..8953-

>mRNA_Ecto-sp13_S_contig5679.16042.1 ID=mRNA_Ecto-sp13_S_contig5679.16042.1|Name=mRNA_Ecto-sp13_S_contig5679.16042.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5679:7774..8953- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGAACATTTTCTTGGCTTCGAGGTTGACCACAAATGCTTTCAAGACGTG
GTCGCAGGCGGGCGTGAGCATGGATGGCGTTACCGATCTCCTCCGGATCT
TCGGGAACGAGCGTTACATGCTGGCGTACACGGAGAAGAAGAAGAGGAGG
AGGCAAGCGAAAGGGATCATCAGAGCCAGAGCGGGAGATGGCGACGGCGG
CGGCGGCAGGGCGGCGCCGAGAGGGATACTGAGCGTGATTCTCCACAGAG
ACGCGACAGGGGCCGACACGGTAAAGTCTCTCCTAGCGCTCGAGTACCTC
CAGGACGAGCTGAAGCAGGCGGGCTTCGAGGTCGTGGGGGCACCGCCGGC
CGCAAGAAGCGGTGGCAGAGCGACAGCGCCCGCCGCCAAGACGAGACCCA
TCAACGGCGACGGCTCGCCGGCGGTCGCGGAGCCGGCGGTGGCGGCGGCG
GCGGTCACAAGGGGAGCTCCGTCGCCGCCGCCAGGCGGCGCTGAGCAGGG
GGAAGCGGCGTCGGGGGCACCAACCACGAGAAGTAGCGGCGGGACGGCTC
CTGTGTTGAGCGCAGCACGGGCGGGGGGGGCGGAATCTGAGCGACCCCAG
CCGTCCTCCGCAGAGCTGTGCCGCTGCCTGGAGGCCGCACGACGAAGAGC
GGAGGAGGGCGCGCCCGGCTTTTTCGCGGCGCTGGAGACGTTGGGGTGGA
GCACGGAGAAGTTCATGTTCGGAAACATCAAGTCGAGGGTGGAGTGGAGA
TCCTGA
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