mRNA_Ecto-sp13_S_contig5657.16014.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5657.16014.1
Unique NamemRNA_Ecto-sp13_S_contig5657.16014.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: D7FQ68_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ68_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.080e-50
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 FRVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            FRVSDAT VTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKE+KNRQKKIRGTGRRIAKHKAKKAAK
Sbjct:   48 FRVSDATMVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKEAKNRQKKIRGTGRRIAKHKAKKAAK 135
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: A0A7S2US90_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US90_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.330e-37
Identity = 70/87 (80.46%), Postives = 76/87 (87.36%), Query Frame = 1 
Query:    4 RVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            +V+D TTV+LFGFRT FGG KSTGFCLIYDSVED KKFEPK RL R GL +K ETSRKQIKE+KNR KKIRGTGRRIA+HKAKKA K
Sbjct:   50 KVNDTTTVSLFGFRTAFGGNKSTGFCLIYDSVEDAKKFEPKFRLVRLGLAEKTETSRKQIKEAKNRGKKIRGTGRRIARHKAKKANK 136
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: F0YI50_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI50_AURAN)

HSP 1 Score: 127 bits (318), Expect = 3.680e-35
Identity = 64/87 (73.56%), Postives = 75/87 (86.21%), Query Frame = 1 
Query:    4 RVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            +V+D   ++LFGFR  FGGGKSTGFCLIYDS E  KK+EPK+RL R G+ +KKETSRKQIKE+KNR+KK+RGTGRRIA HKAKKAAK
Sbjct:   49 KVADTQLISLFGFRNKFGGGKSTGFCLIYDSAEAAKKYEPKYRLIRNGIVEKKETSRKQIKEAKNRKKKVRGTGRRIANHKAKKAAK 135
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: W7U6J8_9STRA (40S ribosomal protein S24 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6J8_9STRA)

HSP 1 Score: 125 bits (315), Expect = 1.080e-34
Identity = 67/81 (82.72%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:   22 TVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            T  LFGFRT FGGGKSTGF LIYD++ED KKFEPKHRL RAGL  KKETSRKQIKE+KNR KKIRGTGRR+AKHKAKKA K
Sbjct:   57 TTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: A0A8J2WEF7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEF7_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.150e-33
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:    1 FRVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKK----IRGTGRRIAKHKAKKAAK 264
            ++V+D + ++LFGFR  FGGGKSTGFCLIYDS E  KK+EPK+RL R G  +KKETSRKQIKE+KNR+KK    IRGTGRRIA HKAKKAAK
Sbjct:   54 YKVTDKSLISLFGFRNKFGGGKSTGFCLIYDSAESAKKYEPKYRLVRNGFVEKKETSRKQIKEAKNRKKKQIRQIRGTGRRIANHKAKKAAK 145
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: A0A0P5B3P7_9CRUS (40S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0P5B3P7_9CRUS)

HSP 1 Score: 122 bits (306), Expect = 2.510e-33
Identity = 65/89 (73.03%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 FRVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQ-KKIRGTGRRIAKHKAKKAAK 264
            ++V DATTV L+GFRT FGGGKS+GFCLIYDS+ D K+FEPKHRL R GL DK ETSRKQIKE+KNR  K  RG GRRIA+HKA KA K
Sbjct:   50 YKVKDATTVFLYGFRTAFGGGKSSGFCLIYDSINDAKRFEPKHRLVRQGLADKVETSRKQIKEAKNRALKNPRGVGRRIARHKANKANK 138
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: F0WPH7_9STRA (40S ribosomal protein S24 n=3 Tax=Albugo TaxID=65356 RepID=F0WPH7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 4.900e-33
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 FRVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            ++V D  TV L+GFRT FGGGKSTGF LIYDSV D K+FEPK+RL R GL +K E+SRKQIKE+KNR+KKIRG GRRIA+HKA KA K
Sbjct:   50 YKVKDTNTVVLYGFRTQFGGGKSTGFGLIYDSVNDAKRFEPKYRLIRQGLAEKVESSRKQIKEAKNRKKKIRGVGRRIARHKAAKANK 137
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: A0A7S4HQJ4_9STRA (Hypothetical protein n=2 Tax=Odontellaceae TaxID=2749909 RepID=A0A7S4HQJ4_9STRA)

HSP 1 Score: 121 bits (303), Expect = 6.950e-33
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:   10 SDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAA 261
            +D     LFGFRT FGGGKSTGFCL+YDS E ++KFEPKHRL R G+Q+KKETSRK +KE+KN+ KK+RGTGR IAKHKAK+AA
Sbjct:   51 ADPKLTVLFGFRTKFGGGKSTGFCLVYDSEEALRKFEPKHRLVRQGIQEKKETSRKAMKEAKNKGKKVRGTGRSIAKHKAKRAA 134
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: W4GRV1_9STRA (40S ribosomal protein S24 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=W4GRV1_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.400e-32
Identity = 62/88 (70.45%), Postives = 72/88 (81.82%), Query Frame = 1 
Query:    1 FRVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            ++V+D  TV L+GFRT FGGGKS+GF LIYD+V D KKFEPK+RL R GL +K E SRKQIKESKNR KK+RG GRRIA+HKA KA K
Sbjct:   50 YKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137
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BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Match: M4BX32_HYAAE (40S ribosomal protein S24 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BX32_HYAAE)

HSP 1 Score: 119 bits (298), Expect = 2.640e-32
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 FRVSDATTVTLFGFRTHFGGGKSTGFCLIYDSVEDMKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKKAAK 264
            ++V D+ TV L+GFRT FGGGKS+GF L+YDSV D K+FEPK+RL R GL +K ETSRKQIKE+KNR KK+RG GRRIA+HKA KA K
Sbjct:   36 YKVKDSNTVFLYGFRTQFGGGKSSGFGLVYDSVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRAKKVRGVGRRIARHKAAKANK 123
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5657.16014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ68_ECTSI1.080e-5097.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2US90_9STRA1.330e-3780.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0YI50_AURAN3.680e-3573.56Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
W7U6J8_9STRA1.080e-3482.7240S ribosomal protein S24 n=2 Tax=Monodopsidaceae ... [more]
A0A8J2WEF7_9STRA1.150e-3370.65Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0P5B3P7_9CRUS2.510e-3373.0340S ribosomal protein S24 n=3 Tax=Eukaryota TaxID=... [more]
F0WPH7_9STRA4.900e-3371.5940S ribosomal protein S24 n=3 Tax=Albugo TaxID=653... [more]
A0A7S4HQJ4_9STRA6.950e-3371.43Hypothetical protein n=2 Tax=Odontellaceae TaxID=2... [more]
W4GRV1_9STRA1.400e-3270.4540S ribosomal protein S24 n=6 Tax=Saprolegniaceae ... [more]
M4BX32_HYAAE2.640e-3269.3240S ribosomal protein S24 n=1 Tax=Hyaloperonospora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5657contigEcto-sp13_S_contig5657:742..1633 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score92.8
Seed ortholog evalue5.2e-17
Seed eggNOG ortholog2880.D7FQ68
Preferred nameRPS24
Model size378
KEGG rclassRC00002,RC02878
KEGG koko:K01008,ko:K02974,ko:K17338
KEGG ReactionR03595
KEGG Pathwayko00450,ko01100,ko03010,map00450,map01100,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000184,GO:0000462,GO:0000956,GO:0001889,GO:0002181,GO:0002182,GO:0002262,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022613,GO:0022626,GO:0022627,GO:0030312,GO:0030490,GO:0031090,GO:0031099,GO:0031100,GO:0031369,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0048872,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons2
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2004@1,KOG3424@2759
EC2.7.9.3
Cds size162
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03016
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.8441446-UTR-Ecto-sp13_S_contig5657:741..8461681463783.8441446-UTR-Ecto-sp13_S_contig5657:741..846Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5657 742..846 +
1681463783.8803215-UTR-Ecto-sp13_S_contig5657:1522..16331681463783.8803215-UTR-Ecto-sp13_S_contig5657:1522..1633Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5657 1523..1633 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.858154-CDS-Ecto-sp13_S_contig5657:846..8941681463783.858154-CDS-Ecto-sp13_S_contig5657:846..894Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5657 847..894 +
1681463783.8694808-CDS-Ecto-sp13_S_contig5657:1408..15221681463783.8694808-CDS-Ecto-sp13_S_contig5657:1408..1522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5657 1409..1522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5657.16014.1prot_Ecto-sp13_S_contig5657.16014.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5657 847..1522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5657.16014.1

>prot_Ecto-sp13_S_contig5657.16014.1 ID=prot_Ecto-sp13_S_contig5657.16014.1|Name=mRNA_Ecto-sp13_S_contig5657.16014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MKKFEPKHRLARAGLQDKKETSRKQIKESKNRQKKIRGTGRRIAKHKAKK
AAK*
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mRNA from alignment at Ecto-sp13_S_contig5657:742..1633+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5657.16014.1 ID=mRNA_Ecto-sp13_S_contig5657.16014.1|Name=mRNA_Ecto-sp13_S_contig5657.16014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=892bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5657:742..1633+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCCGCGTGTCGGACGCGACGACAGTGACCCTCTTCGGCTTCCGGACCCA
CTTCGGCGGGGGCAAGAGCACCGGCTTCTGCCTCATCTACGACAGCGTGG
AGGACATGAAGAAGTTCGAGCCCAAGCACCGCCTCGCACGGGCGGGTCTC
CAGGTGTGTGTTTGGAGCCGCGGCCTGAAGCAGACGGTGTTCAGAGAACG
TTCTCAGTACATATGTGGTGCGCGGTATCGGTTTTTAGACTGTTTTTTGT
TTTGTCGCGTGGAGACTCTTGCTGTTGCTGTTGCCTTCGTGGTCTTGGCC
CTATAAAAGAAATTCTTGTCTCTGGCCGGTACCTTGTACTGGACGGTTTG
GTCAAGCTGGCGTGGATGCCTTGGTGGTGAGGGCTGTAGTACCAACACCC
AGGTAGGGCTATGTTACGATGGGAGAATTTCCTACAAGCAAGGCCCAAGA
AAATCAACCCCAACGCGATAAAAATTGAACCGAGTCCGCGAGACATTTCG
ACGAAGTAGGGAGTATGTGGGACAATGCAGTTCGACACGCACCCCAATTT
GTTTGCATTCTCTTCATTGCCAACGAACGTCGAAGACTGCTGTGAAGCGA
TTGTCCCAGCTCTTCGAATGTCTCACACACTCTGTTGTGTGTCGTGCTTT
TTTCTTCCTTGTTTCAGGACAAGAAGGAGACCTCCCGTAAGCAGATCAAG
GAGTCCAAGAACAGGCAAAAGAAGATCCGCGGCACCGGTCGCCGTATCGC
CAAGCACAAGGCGAAGAAGGCCGCTAAGTAGATACCCGGCCGACCACGTT
CTTTCAGCTGCCACCAAGCTTTGCAACACTTGCTTGCAATGCGGGATCTA
CTTTTTGGCGGTCTTTCTCTGGTTGGTTTGCGCTGGACGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5657:742..1633+

>mRNA_Ecto-sp13_S_contig5657.16014.1 ID=mRNA_Ecto-sp13_S_contig5657.16014.1|Name=mRNA_Ecto-sp13_S_contig5657.16014.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5657:742..1633+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAAGTTCGAGCCCAAGCACCGCCTCGCACGGGCGGGTCTCCAGGA
CAAGAAGGAGACCTCCCGTAAGCAGATCAAGGAGTCCAAGAACAGGCAAA
AGAAGATCCGCGGCACCGGTCGCCGTATCGCCAAGCACAAGGCGAAGAAG
GCCGCTAAGTAG
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