mRNA_Ecto-sp13_S_contig5657.16015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5657.16015.1
Unique NamemRNA_Ecto-sp13_S_contig5657.16015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5657.16015.1 vs. uniprot
Match: A0A6H5K8D9_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D9_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.370e-6
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 1 
Query:  175 ESILGRLSTGNPWIDTVVAAVIPIAM 252
            ESILGRLS+GNPWIDTVVAAVIPIAM
Sbjct:   21 ESILGRLSSGNPWIDTVVAAVIPIAM 46
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5657.16015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K8D9_9PHAE6.370e-696.15AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5657contigEcto-sp13_S_contig5657:6786..8945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size254
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.7831373-UTR-Ecto-sp13_S_contig5657:6785..68651681463783.7831373-UTR-Ecto-sp13_S_contig5657:6785..6865Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5657 6786..6865 +
1681463783.7937748-UTR-Ecto-sp13_S_contig5657:7805..78191681463783.7937748-UTR-Ecto-sp13_S_contig5657:7805..7819Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5657 7806..7819 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.8037083-CDS-Ecto-sp13_S_contig5657:7819..78991681463783.8037083-CDS-Ecto-sp13_S_contig5657:7819..7899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5657 7820..7899 +
1681463783.8134556-CDS-Ecto-sp13_S_contig5657:8866..89451681463783.8134556-CDS-Ecto-sp13_S_contig5657:8866..8945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5657 8867..8945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5657.16015.1prot_Ecto-sp13_S_contig5657.16015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5657 7820..8945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5657.16015.1

>prot_Ecto-sp13_S_contig5657.16015.1 ID=prot_Ecto-sp13_S_contig5657.16015.1|Name=mRNA_Ecto-sp13_S_contig5657.16015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MRVAAPLFVHCPRGAARRACLPEAKKRRAFWGGCPRVTPGSTPSSPPLSR
SPC
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mRNA from alignment at Ecto-sp13_S_contig5657:6786..8945+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5657.16015.1 ID=mRNA_Ecto-sp13_S_contig5657.16015.1|Name=mRNA_Ecto-sp13_S_contig5657.16015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2160bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5657:6786..8945+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCATTCCTTGCGCACACCATGGACTTCATGATGAAGATGGACTTCCTT
TTAAAAAATGGCGGCGGGGGTAGCATGCATGTGAGTAGCGGCTGAGGATT
ACTCAGCCGCGAGGTTCGTAGCGCCTGCCTTGTTTATTTTCTCGGCTGTT
CACGCACACCACAACCAACGTGAAATGATTGAAGTCAGTTCAAAGTTCGA
AGTAACGAATTAGGAATTAGCGGCCGACCCCACGAAGATAGATGCGTCAC
AGCCTGACTGTTGCCCCTGCTGCCACTGGGGGGCAGAACATGCCCTTGCT
TTTTCCCTGTAATGAAGAGCTATTCTGTCCGAAAAAGCACCCGCACGAAT
GTTGACGCACACTGGTGCCCGCTGCTGCTGTGTGCGTGCTTTTCGATGCT
TTGCGGGCAAACACCAGACCATCGTTTTACACATGCCCGTTTTCTGGCAA
AGATTAAGATTTACGCGAAAAACGAAAGGGCGCTGTTGCCCTCTTCCTAG
GTTTCAAGTGTCTCCGATTAGAACAGAGAAGATAATAATGGGGGACAAGG
GGGACGTACGTGTGTACAAAGAGAGAGAGAGTGCGCAGTGATAAAACTGC
AGATGATAGCAGAGAGAGGCGATTGCCTGGTGAAATGGTTTTTTTATGCC
ACAAATGCAAGCAAGTAAACGATCACCACCTGGTCTCACGGTCGTTTTTT
GTAACTGGATCAAGTTGGCTGGATGTCGGAGGCTTATCCAAGAGTTCGCC
GCTGGCCTGCGCCACGCTTTTCTTAGATCTTGGTGTAGTACTCGCTGGAC
AGCGAGGGAGAGAGCGAGACGGGCGTCACTCGTTGTTCCTTTTTTCGGAA
GCTGATTTGTTCTCAAAGTTCAAAGTTTTACAGCAGTCGGGTGCATACAG
AGTCTGTCTATATCAATACAAGGACATTCGTGTGTGTTCTCTCCGCTCAT
GTAAAAAAAGAAAACGTGCGCAAAACTTAGCTATTCGGGACTCCTCCTGT
ACTGGCTGCACACGTCACAGAGTTCTCCGTCTCCATGCGAGTCGCCGCCC
CGCTATTTGTGCATTGCCCGCGGGGCGCGGCAAGACGGGCCTGTCTTCCA
GAAGCAAAAAAAAGGTAATACTATTGTAGTACAGAAACCGGGAACGCTCC
CCATCACTTCTGGAGAAGAGCGGGAAAAAGTGTCTTGCGAGCTCTAGCTT
AACCACGAACTAGACCGAGGTTGGGTGAGGGTGTGCGGGTGCAAAGCGCC
TGTCCTCTCGAAACGCGGGGAGTTTTAATAGAGGGCGAAGCTTGCGTCAG
CAATCCAGACTCTCAGATGGTTTACGAAGAACAAATTCGGTCAATGTTAG
TAGACCCACAGCGACCAGTACTACTACACTGAATCCTACCTTTTCTCCGC
AAAAGCCTGAGCTCCACGGACGTTGGCGACCAAACAAGGTGTTGAACCTT
GCTAAAATATCTGTTTCTTGTGAGTGGGCCAGCGCTGTATTTCATCTTCC
TTTCATGCGGCACGAGGGACAAGGTCAGGTGTTGCTCATGGCGTACGAAA
AAAGTATGTGCGCGGGGAGTACTCAGACCCCCACAAACTAACCCGCAAGG
TTCGCGTTGAAATGTCGGCCGTGTTATTCCACCCTCTCGGCGTGGATACA
CTGCACTATCGCGCGACATGGCGGTGTTTGTTTTGTAAGGGATACTTTGA
CCATCTGTCGCGTACAAAATTGCGAAACAACAGACAGTCTCGACAAACTA
CCCAAAACGTAAGAGGGAAGACCTCGAATCCATCACATCTTTACCCCCGG
AAGCCACAAGGTTTGAGCGCACCTGCCCTTGAACCCTTGGCGAGGCCACC
AGTTTCTGCGCAGTAGCTACGCATCCATTGCTGGATGGAATTGACTATTT
ATTCATTTGAATACGATAACAGCAGTGTGCGCTGGCGAAGCAGGGCACGA
ACAGGGTGTAGAGTTTTTGTGTCTCAAGAAGAAACCTTCTCATGCATGCA
TGCATGCATGCGTGTGTGTTCGCGATTCTTCGTATCTAACGACCTCTCTT
CACAATTTGACCTCGACTACATTTACCACAGGAGAGCATTCTGGGGAGGC
TGTCCACGGGTAACCCCTGGATCGACACCGTCGTCGCCGCCGTTATCCCG
ATCGCCATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5657:6786..8945+

>mRNA_Ecto-sp13_S_contig5657.16015.1 ID=mRNA_Ecto-sp13_S_contig5657.16015.1|Name=mRNA_Ecto-sp13_S_contig5657.16015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5657:6786..8945+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGAGTCGCCGCCCCGCTATTTGTGCATTGCCCGCGGGGCGCGGCAAG
ACGGGCCTGTCTTCCAGAAGCAAAAAAAAGGAGAGCATTCTGGGGAGGCT
GTCCACGGGTAACCCCTGGATCGACACCGTCGTCGCCGCCGTTATCCCGA
TCGCCATGC
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