mRNA_Ecto-sp13_S_contig56563.16012.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56563.16012.1
Unique NamemRNA_Ecto-sp13_S_contig56563.16012.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56563.16012.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 5.550e-10
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 3 
Query:   51 AAFVATCGNGVPGVENGMGTVCCPIECGDACGGSGCGE---VDETTCCASTILELHEDCDVSEEAPCFITSCKSWPRRASTNCA 293
            AA  + C NG  GV +    VCCP+ECGD+CGG GCG    V+ T CC+S I+E    C  +  APC + + ++     ST C+
Sbjct:   98 AANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEA---DNSTTCS 178
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BLAST of mRNA_Ecto-sp13_S_contig56563.16012.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 6.020e-10
Identity = 32/80 (40.00%), Postives = 46/80 (57.50%), Query Frame = 3 
Query:   63 ATCGNGVPGVENGMGTVCCPIECGDACGGSGCGE---VDETTCCASTILELHEDCDVSEEAPCFITSCKSWPRRASTNCA 293
            + C NG  GV++    VCCP+ CGD+CGG GCG    VD T CC++ I+E    C  +  APC + + ++     ST C+
Sbjct:  102 SVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEA---DNSTTCS 178
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BLAST of mRNA_Ecto-sp13_S_contig56563.16012.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.670e-8
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 3 
Query:   63 ATCGNGVPGVENGMGTVCCPIECGDACGGSGCGE---VDETTCCASTILELHEDCDVSEEAPC 242
            + C NG  GV++    VCCP+ECG++CGG GCG    VD + CCAS I +    C    EAPC
Sbjct:   97 SVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPC 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56563.16012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7R2_9PHAE5.550e-1041.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LML5_ECTSI6.020e-1040.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG71_ECTSI1.670e-847.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56563contigEcto-sp13_S_contig56563:333..668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size337
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.7008164-CDS-Ecto-sp13_S_contig56563:332..6621681463783.7008164-CDS-Ecto-sp13_S_contig56563:332..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56563 333..662 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.7123861-UTR-Ecto-sp13_S_contig56563:662..6681681463783.7123861-UTR-Ecto-sp13_S_contig56563:662..668Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig56563 663..668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56563.16012.1prot_Ecto-sp13_S_contig56563.16012.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56563 333..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56563.16012.1

>prot_Ecto-sp13_S_contig56563.16012.1 ID=prot_Ecto-sp13_S_contig56563.16012.1|Name=mRNA_Ecto-sp13_S_contig56563.16012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=110bp
YSPIPSISLALLASLDEQHSSRRAATASRGSRTVWEQYAARLSAVMLAEV
QAVARSMRPLVAHQQSWNCTRTAMFPKKHRVSSPAVSLGPGERLQTVPLS
PSHDPSHEP*
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mRNA from alignment at Ecto-sp13_S_contig56563:333..668+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56563.16012.1 ID=mRNA_Ecto-sp13_S_contig56563.16012.1|Name=mRNA_Ecto-sp13_S_contig56563.16012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56563:333..668+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTCGCCTATTCCCTCGATCTCGCTTGCCCTCCTCGCTTCCTTGGATGA
GCAGCATTCGTCGCGACGTGCGGCAACGGCGTCCCGGGGGTCGAGAACGG
TATGGGAACAGTATGCTGCCCGATTGAGTGCGGTGATGCTTGCGGAGGTT
CAGGCTGTGGCGAGGTCGATGAGACCACTTGTTGCGCATCAACAATCTTG
GAATTGCACGAGGACTGCGATGTTTCCGAAGAAGCACCGTGTTTCATCAC
CAGCTGTAAGTCTTGGCCCAGGAGAGCGTCTACAAACTGTGCCTTTGTCG
CCAAGTCATGACCCTTCGCATGAGCCTTGATCGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56563:333..668+

>mRNA_Ecto-sp13_S_contig56563.16012.1 ID=mRNA_Ecto-sp13_S_contig56563.16012.1|Name=mRNA_Ecto-sp13_S_contig56563.16012.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56563:333..668+ (Ectocarpus species13 EcNAP12_S_4_19m)
TACTCGCCTATTCCCTCGATCTCGCTTGCCCTCCTCGCTTCCTTGGATGA
GCAGCATTCGTCGCGACGTGCGGCAACGGCGTCCCGGGGGTCGAGAACGG
TATGGGAACAGTATGCTGCCCGATTGAGTGCGGTGATGCTTGCGGAGGTT
CAGGCTGTGGCGAGGTCGATGAGACCACTTGTTGCGCATCAACAATCTTG
GAATTGCACGAGGACTGCGATGTTTCCGAAGAAGCACCGTGTTTCATCAC
CAGCTGTAAGTCTTGGCCCAGGAGAGCGTCTACAAACTGTGCCTTTGTCG
CCAAGTCATGACCCTTCGCATGAGCCTTGA
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