mRNA_Ecto-sp13_S_contig5655.16007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5655.16007.1
Unique NamemRNA_Ecto-sp13_S_contig5655.16007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5655.16007.1 vs. uniprot
Match: D7G833_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G833_ECTSI)

HSP 1 Score: 577 bits (1487), Expect = 8.850e-204
Identity = 295/328 (89.94%), Postives = 307/328 (93.60%), Query Frame = 1 
Query:    1 AHITAGEDPLPNNADLILIDVHEEVLSADDWVDLFRSLMRALSDDGVIVIRGPREQEDATTGAGSNDRAGLTVRAWYGSGQLWDAVTALACDQVAAAAAAVGNLDGGIIVLRHAAPGEIDLKTAQARCGRNHPGQQGGGVAKGAVAAAPPHPLRFERLFLWSTAQSDITTATAIEAVQAKFGGANAVRKNARRRYDRSACLNTLNTFATADAAAWSEPSLETESMGGGHLRAEPRHIRHKSLPQSGAASQWHSAARACLETHLEEHSQDVRAGFALEMVLRATGGNGVDRQVARLRTRMIDESGPAGGLLWRALYARAAGVAATGLLL 984
            A +TAGEDPLP+NADLILIDVH+EVLSADDWVDLFRSLMRALSDDGVIVIRGPREQ DATTGAG N+ AG T+RAWYGSG LWDAVTALACDQVAAAAA VGNLDGGIIVLRHAAPGEIDL+T +ARCGRNHPGQQGGGVAKGAVAAAPPHPLRFERLFLWSTA SDITTATAIEAVQA FGGAN VRK ARRRYDRS CLNTLNT AT +A AWSE SLETESMGGGHLRAEPRHIRHKS+PQSGAA QWHSAARACLETHLEEH QDVRAGFALEMVLRATGG+GVDRQV RLRTRM +ESGPAGGLLWRAL+ARAAGVAATGLLL
Sbjct:  193 AQVTAGEDPLPDNADLILIDVHKEVLSADDWVDLFRSLMRALSDDGVIVIRGPREQVDATTGAGRNEGAGSTIRAWYGSGHLWDAVTALACDQVAAAAA-VGNLDGGIIVLRHAAPGEIDLETVKARCGRNHPGQQGGGVAKGAVAAAPPHPLRFERLFLWSTAPSDITTATAIEAVQAMFGGANEVRKYARRRYDRSVCLNTLNTVATGEAVAWSEASLETESMGGGHLRAEPRHIRHKSVPQSGAAPQWHSAARACLETHLEEHPQDVRAGFALEMVLRATGGSGVDRQVDRLRTRMTEESGPAGGLLWRALHARAAGVAATGLLL 519
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5655.16007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G833_ECTSI8.850e-20489.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5655contigEcto-sp13_S_contig5655:2870..4577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size987
Hectar predicted targeting categoryother localisation
Exons3
Cds size987
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.3678813-CDS-Ecto-sp13_S_contig5655:2869..29891681463783.3678813-CDS-Ecto-sp13_S_contig5655:2869..2989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5655 2870..2989 +
1681463783.3773744-CDS-Ecto-sp13_S_contig5655:3394..35911681463783.3773744-CDS-Ecto-sp13_S_contig5655:3394..3591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5655 3395..3591 +
1681463783.3861568-CDS-Ecto-sp13_S_contig5655:3907..45771681463783.3861568-CDS-Ecto-sp13_S_contig5655:3907..4577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5655 3908..4577 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5655.16007.1prot_Ecto-sp13_S_contig5655.16007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5655 2870..4577 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5655.16007.1

>prot_Ecto-sp13_S_contig5655.16007.1 ID=prot_Ecto-sp13_S_contig5655.16007.1|Name=mRNA_Ecto-sp13_S_contig5655.16007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=329bp
AHITAGEDPLPNNADLILIDVHEEVLSADDWVDLFRSLMRALSDDGVIVI
RGPREQEDATTGAGSNDRAGLTVRAWYGSGQLWDAVTALACDQVAAAAAA
VGNLDGGIIVLRHAAPGEIDLKTAQARCGRNHPGQQGGGVAKGAVAAAPP
HPLRFERLFLWSTAQSDITTATAIEAVQAKFGGANAVRKNARRRYDRSAC
LNTLNTFATADAAAWSEPSLETESMGGGHLRAEPRHIRHKSLPQSGAASQ
WHSAARACLETHLEEHSQDVRAGFALEMVLRATGGNGVDRQVARLRTRMI
DESGPAGGLLWRALYARAAGVAATGLLL*
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mRNA from alignment at Ecto-sp13_S_contig5655:2870..4577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5655.16007.1 ID=mRNA_Ecto-sp13_S_contig5655.16007.1|Name=mRNA_Ecto-sp13_S_contig5655.16007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5655:2870..4577+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACATAACGGCCGGCGAGGACCCGCTTCCAAATAACGCCGATCTGAT
CCTCATTGATGTCCACGAGGAAGTGCTGTCTGCAGATGACTGGGTGGACC
TGTTTCGCTCCTTGATGCGGGTGCGAACGTGTGCCTTTATTCTGGTAGAG
TCGAGTCGAGTCGAGAACGCTCGGTGATTTCGTGCGATCAAGAAAAGTCA
CGAACGGTGTCGCTGTCTACGGAGAGTTAAACAGTGGTCGCTCGCAACAC
GCCAGATGTTCTAATGATACAGTCACATGCTTGATCGAGGACGCGATATT
CTGTTGTCCAAGGGCCACCGTCACGACGAACGAGACCAAGTCAGTCAAGG
GGTGGCAAACGTCTCCGCACTGCTGTGACCGTTTCCTGTCCCGTAACTCC
GATTGACGTTTTGGTCCCAAAGAAGCCGACGTTGTCCATATTGCCGCCCA
CGCGACCTAAGCCGCCGGTGAAAACCGTTTTATGTTCACTCATTACCGAC
ATCGCATCCGTCTGGACCCTGCCAGGCGTTATCAGATGACGGGGTAATTG
TAATCCGCGGCCCGCGGGAGCAAGAAGACGCGACAACGGGTGCGGGGAGT
AACGATAGAGCGGGGTTGACAGTTCGCGCTTGGTACGGAAGCGGACAACT
GTGGGACGCGGTGACGGCTCTCGCGTGCGACCAAGTTGCCGCTGCTGCTG
CTGCTGTGGGTAATTTAGACGGGTAAGCATATCTCGTGCACCTTGGACGT
GACCCAGGTGGATTTGACGTTTTTCAACATAAAACAAAGCGGAGCGCTAC
ACGTGAAGCTCGTACCCTTGATGGTCCCTCTTCGTGCCCCGGCTGGAGGG
CCAATTTTCGTTCCACAATGAAAATCTAGACGTTGCTTATCTTCGAACTT
TGACTGATGCTTTATCGCATCACCGTACCGTGTTTAAAAGACCTCGAGCT
CTGCACGCGCGCCCAGTTTGACCCTCTCCTAGGCATCGGTTGCCTCACTT
TCTTGCATGTCCTCCTCGATGCGCGCCTATTTACCCAGGGGCATCATCGT
GCTACGACACGCGGCACCTGGCGAAATAGATTTAAAGACTGCACAGGCAA
GATGTGGCCGTAACCACCCAGGGCAACAGGGCGGGGGCGTAGCGAAGGGA
GCGGTGGCGGCAGCCCCACCCCACCCATTGCGATTCGAAAGACTTTTCCT
ATGGTCGACCGCACAGAGTGACATAACCACAGCTACGGCGATCGAGGCTG
TTCAGGCCAAGTTTGGCGGAGCGAACGCGGTGCGGAAAAACGCCCGGCGA
AGGTACGACCGATCGGCGTGCTTGAACACCTTGAACACCTTCGCCACCGC
CGACGCTGCGGCTTGGAGCGAACCATCGTTAGAAACGGAAAGCATGGGCG
GTGGGCACCTCCGCGCCGAACCGCGGCACATTCGCCACAAGAGTCTGCCA
CAAAGCGGTGCTGCATCCCAGTGGCACTCTGCTGCGCGAGCGTGCCTGGA
GACGCACTTGGAGGAGCACTCGCAGGATGTGCGAGCCGGGTTCGCGCTCG
AGATGGTGCTTAGGGCGACCGGGGGCAACGGAGTCGACAGGCAGGTTGCC
CGCCTTCGAACGAGAATGATTGACGAGAGTGGGCCGGCGGGAGGCCTCCT
TTGGCGAGCGCTGTACGCGCGCGCGGCCGGTGTGGCGGCAACGGGGCTGC
TCCTTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5655:2870..4577+

>mRNA_Ecto-sp13_S_contig5655.16007.1 ID=mRNA_Ecto-sp13_S_contig5655.16007.1|Name=mRNA_Ecto-sp13_S_contig5655.16007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=987bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5655:2870..4577+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCACATAACGGCCGGCGAGGACCCGCTTCCAAATAACGCCGATCTGAT
CCTCATTGATGTCCACGAGGAAGTGCTGTCTGCAGATGACTGGGTGGACC
TGTTTCGCTCCTTGATGCGGGCGTTATCAGATGACGGGGTAATTGTAATC
CGCGGCCCGCGGGAGCAAGAAGACGCGACAACGGGTGCGGGGAGTAACGA
TAGAGCGGGGTTGACAGTTCGCGCTTGGTACGGAAGCGGACAACTGTGGG
ACGCGGTGACGGCTCTCGCGTGCGACCAAGTTGCCGCTGCTGCTGCTGCT
GTGGGTAATTTAGACGGGGGCATCATCGTGCTACGACACGCGGCACCTGG
CGAAATAGATTTAAAGACTGCACAGGCAAGATGTGGCCGTAACCACCCAG
GGCAACAGGGCGGGGGCGTAGCGAAGGGAGCGGTGGCGGCAGCCCCACCC
CACCCATTGCGATTCGAAAGACTTTTCCTATGGTCGACCGCACAGAGTGA
CATAACCACAGCTACGGCGATCGAGGCTGTTCAGGCCAAGTTTGGCGGAG
CGAACGCGGTGCGGAAAAACGCCCGGCGAAGGTACGACCGATCGGCGTGC
TTGAACACCTTGAACACCTTCGCCACCGCCGACGCTGCGGCTTGGAGCGA
ACCATCGTTAGAAACGGAAAGCATGGGCGGTGGGCACCTCCGCGCCGAAC
CGCGGCACATTCGCCACAAGAGTCTGCCACAAAGCGGTGCTGCATCCCAG
TGGCACTCTGCTGCGCGAGCGTGCCTGGAGACGCACTTGGAGGAGCACTC
GCAGGATGTGCGAGCCGGGTTCGCGCTCGAGATGGTGCTTAGGGCGACCG
GGGGCAACGGAGTCGACAGGCAGGTTGCCCGCCTTCGAACGAGAATGATT
GACGAGAGTGGGCCGGCGGGAGGCCTCCTTTGGCGAGCGCTGTACGCGCG
CGCGGCCGGTGTGGCGGCAACGGGGCTGCTCCTTTAG
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