mRNA_Ecto-sp13_S_contig5655.16006.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5655.16006.1
Unique NamemRNA_Ecto-sp13_S_contig5655.16006.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5655.16006.1 vs. uniprot
Match: D7G833_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G833_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 2.290e-55
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 QAARFADPDGHCLYPSPGANQPTAERLGVFTCVADTPFFLRALAESLRFRFLVVVDVGSVSLRHGLPASPPGLGAALTGLESEMFPEAPQLQARHRLG 294
            QAARFADPDGHCLYPSPGA+QPTAERLGVFTC+ADTPFFLRALAESLRFRFLVVVDVGSVSLRHGLPASPPGLGAALTGLESEMFPEAPQLQA+   G
Sbjct:  101 QAARFADPDGHCLYPSPGADQPTAERLGVFTCLADTPFFLRALAESLRFRFLVVVDVGSVSLRHGLPASPPGLGAALTGLESEMFPEAPQLQAQVTAG 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5655.16006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G833_ECTSI2.290e-5593.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5655contigEcto-sp13_S_contig5655:2207..2509 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size303
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-00_010600.1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.3272064-CDS-Ecto-sp13_S_contig5655:2206..25091681463783.3272064-CDS-Ecto-sp13_S_contig5655:2206..2509Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5655 2207..2509 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5655.16006.1prot_Ecto-sp13_S_contig5655.16006.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5655 2207..2509 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5655.16006.1

>prot_Ecto-sp13_S_contig5655.16006.1 ID=prot_Ecto-sp13_S_contig5655.16006.1|Name=mRNA_Ecto-sp13_S_contig5655.16006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
QAARFADPDGHCLYPSPGANQPTAERLGVFTCVADTPFFLRALAESLRFR
FLVVVDVGSVSLRHGLPASPPGLGAALTGLESEMFPEAPQLQARHRLGII
*
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mRNA from alignment at Ecto-sp13_S_contig5655:2207..2509+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5655.16006.1 ID=mRNA_Ecto-sp13_S_contig5655.16006.1|Name=mRNA_Ecto-sp13_S_contig5655.16006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5655:2207..2509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTGCTCGTTTCGCGGATCCGGATGGGCATTGCCTGTACCCCTCCCC
CGGCGCTAATCAACCGACCGCCGAGAGACTGGGCGTGTTCACCTGCGTGG
CGGACACGCCGTTCTTCCTGCGCGCCCTGGCGGAGTCGCTACGGTTCCGT
TTCTTGGTGGTCGTAGATGTTGGCAGCGTGTCTCTTCGTCACGGTCTTCC
TGCTTCGCCACCTGGGTTGGGCGCGGCGCTCACCGGACTAGAATCGGAGA
TGTTTCCTGAGGCACCGCAGCTACAGGCAAGGCACCGTTTAGGGATAATC
TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5655:2207..2509+

>mRNA_Ecto-sp13_S_contig5655.16006.1 ID=mRNA_Ecto-sp13_S_contig5655.16006.1|Name=mRNA_Ecto-sp13_S_contig5655.16006.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5655:2207..2509+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCTGCTCGTTTCGCGGATCCGGATGGGCATTGCCTGTACCCCTCCCC
CGGCGCTAATCAACCGACCGCCGAGAGACTGGGCGTGTTCACCTGCGTGG
CGGACACGCCGTTCTTCCTGCGCGCCCTGGCGGAGTCGCTACGGTTCCGT
TTCTTGGTGGTCGTAGATGTTGGCAGCGTGTCTCTTCGTCACGGTCTTCC
TGCTTCGCCACCTGGGTTGGGCGCGGCGCTCACCGGACTAGAATCGGAGA
TGTTTCCTGAGGCACCGCAGCTACAGGCAAGGCACCGTTTAGGGATAATC
TAA
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