mRNA_Ecto-sp13_S_contig5654.16005.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5654.16005.1
Unique NamemRNA_Ecto-sp13_S_contig5654.16005.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5654.16005.1 vs. uniprot
Match: D8LU64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU64_ECTSI)

HSP 1 Score: 182 bits (461), Expect = 9.610e-50
Identity = 115/219 (52.51%), Postives = 121/219 (55.25%), Query Frame = 3 
Query: 1596 NPGGGVVRAGVGACTGHIRTTRSRGVPPGAGVGGVEHLRSRKRRNCSISAGASFYRTARTPSMLPAEGTLAGMDTASLSSAAAPFTRRLKRVGVGHATVNLTGAATTAAGQKRAATCGVERTTRDLGVASPSPLGLPRTSSTLARLMQQGGGKEAPGFDAALRASAASSDGNAG-VEVAAVADAIDVGDDDKSSSSDGGAAHEDLSAWLHSTHDWWTSD 2249
            NP GGVVRAGVGACTGH+RTTRSRGVPPGAG+GGVEHLRSRKRR+ SISAGASF                                                                                         +RLMQQGGGKEAPGFDAA+RASAASSDGN G VEVAAVADA+D GDDDK    DGGAAHEDLSAWLHSTHDWWTSD
Sbjct:    3 NPDGGVVRAGVGACTGHVRTTRSRGVPPGAGMGGVEHLRSRKRRSGSISAGASF-----------------------------------------------------------------------------------------SRLMQQGGGKEAPGFDAAVRASAASSDGNTGGVEVAAVADAVDAGDDDKXXXXDGGAAHEDLSAWLHSTHDWWTSD 132
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BLAST of mRNA_Ecto-sp13_S_contig5654.16005.1 vs. uniprot
Match: A0A6H5KGC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 5.560e-20
Identity = 53/75 (70.67%), Postives = 56/75 (74.67%), Query Frame = 3 
Query: 2034 MQQGGGKEAPGFDAALRASAASSDGNA---GVEVAAVADAIDVGDDDKSSSSDGGAAHEDLSAWLHSTHDWWTSD 2249
            MQ+GGGK+APGFDAA+RASAASSDGNA           DAIDVGD       D GAAHEDLSAWLHSTHDWWTSD
Sbjct:    1 MQEGGGKKAPGFDAAVRASAASSDGNARXXXXXXXXXPDAIDVGDXXXXXXXDEGAAHEDLSAWLHSTHDWWTSD 75
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5654.16005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU64_ECTSI9.610e-5052.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGC1_9PHAE5.560e-2070.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5654contigEcto-sp13_S_contig5654:5111..8456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3064
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_000390.1
Cds size2115
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.2686172-UTR-Ecto-sp13_S_contig5654:5110..59221681463783.2686172-UTR-Ecto-sp13_S_contig5654:5110..5922Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5654 5111..5922 -
1681463783.2977526-UTR-Ecto-sp13_S_contig5654:8319..84561681463783.2977526-UTR-Ecto-sp13_S_contig5654:8319..8456Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5654 8320..8456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.2785125-CDS-Ecto-sp13_S_contig5654:5922..64121681463783.2785125-CDS-Ecto-sp13_S_contig5654:5922..6412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5654 5923..6412 -
1681463783.2878008-CDS-Ecto-sp13_S_contig5654:6694..83191681463783.2878008-CDS-Ecto-sp13_S_contig5654:6694..8319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5654 6695..8319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5654.16005.1prot_Ecto-sp13_S_contig5654.16005.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5654 5923..8319 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5654.16005.1

>prot_Ecto-sp13_S_contig5654.16005.1 ID=prot_Ecto-sp13_S_contig5654.16005.1|Name=mRNA_Ecto-sp13_S_contig5654.16005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=705bp
MAERLPSRTEIRMSIGFMNNTTTTDTPSSPEAVFDHAIAIAEERSAGGGR
QPCPQQRRSTRGVNAVHLLPGPYNNASAFGANELAPRPSTSRARGTRQVN
EEHRDGHTFGTSWPTATDIPAARDAAAAGAWAGQDGFHTPTGSRFFGDST
PANNWVRFAWEPLPGGTQYGATAVVFPPDPAAAGGGNSDGSVAGGTTGTT
MLLPLDELWEGPADRNSDESSVCVKRFRPEAGQNSIIGGRRYEGGEKHMD
WTKTPSGSSRRRCLPGLEQFAVAGATRQAARTPQPSLHARPRTSRTITEA
AGRTGTEHRPLPAADERTRRGCGPGGGNIRSSSWGGDVAMDPTRQEEVMV
SQQVQWASRGTAATNYRSQHQQQQQEEQEQQGYVQERYSSDSHETGRSAK
KPRHHRLRVQRVLSAGHMDSLADGVSSLGVASPDAAAAGSGSSSGGWNQA
DAPRTPHGCTWRRDSFGGQTDGSPQTLCPVSALGRSNPGGGVVRAGVGAC
TGHIRTTRSRGVPPGAGVGGVEHLRSRKRRNCSISAGASFYRTARTPSML
PAEGTLAGMDTASLSSAAAPFTRRLKRVGVGHATVNLTGAATTAAGQKRA
ATCGVERTTRDLGVASPSPLGLPRTSSTLARLMQQGGGKEAPGFDAALRA
SAASSDGNAGVEVAAVADAIDVGDDDKSSSSDGGAAHEDLSAWLHSTHDW
WTSD*
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mRNA from alignment at Ecto-sp13_S_contig5654:5111..8456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5654.16005.1 ID=mRNA_Ecto-sp13_S_contig5654.16005.1|Name=mRNA_Ecto-sp13_S_contig5654.16005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3346bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5654:5111..8456- (Ectocarpus species13 EcNAP12_S_4_19m)
CGTGAGCAAATGCACCACACCGCCATGTCAGCAGCAGCAGCTTCCAAGCC
TCGGACCTTGTAGGTGATGTAGAGACAACAGCTAACATCGCCTGGTGACG
ACCGGCGACATCAGGCAGATCGCCCTTCCGCGCAAGAATGGCGGAGCGTT
TGCCCTCTCGCACGGAGATCAGGATGTCAATCGGCTTCATGAACAACACC
ACCACCACCGACACACCATCCTCTCCCGAGGCCGTCTTCGACCACGCCAT
AGCAATAGCAGAAGAGCGCTCTGCTGGAGGAGGCAGGCAGCCGTGCCCAC
AGCAGCGCCGCTCGACCAGAGGGGTGAACGCGGTACACTTGCTGCCCGGT
CCGTACAACAATGCCTCGGCTTTCGGGGCCAACGAGCTAGCACCACGGCC
GTCGACATCACGAGCGAGAGGGACACGGCAGGTCAACGAGGAGCATCGCG
ACGGACACACATTTGGTACCAGCTGGCCTACTGCTACAGATATACCGGCG
GCACGCGACGCTGCTGCTGCTGGTGCTTGGGCGGGACAGGACGGCTTCCA
CACCCCAACCGGGTCGCGGTTTTTCGGCGACAGCACGCCGGCAAACAACT
GGGTCCGTTTCGCTTGGGAACCACTGCCGGGAGGGACACAGTACGGCGCG
ACCGCGGTCGTGTTTCCGCCCGATCCGGCCGCCGCCGGTGGTGGTAATAG
CGACGGTAGTGTTGCCGGAGGCACAACAGGTACGACGATGCTGCTTCCTC
TCGATGAGCTCTGGGAAGGTCCTGCCGACCGAAACTCCGACGAAAGCAGT
GTTTGCGTCAAGCGCTTCCGACCTGAAGCCGGACAGAACAGCATCATCGG
CGGGAGGAGATACGAAGGGGGAGAGAAGCATATGGATTGGACGAAAACCC
CTTCAGGTTCGTCTCGACGCCGGTGCCTGCCCGGACTCGAACAGTTCGCC
GTCGCCGGTGCGACGCGGCAGGCTGCAAGAACGCCACAACCTTCGCTTCA
CGCAAGACCACGGACGTCGAGGACAATCACTGAGGCTGCAGGGAGAACGG
GCACGGAACATCGTCCGCTGCCCGCCGCGGACGAGAGAACGAGGAGGGGA
TGTGGGCCCGGGGGCGGCAACATACGATCAAGCTCTTGGGGCGGAGACGT
GGCGATGGACCCAACGCGACAAGAAGAGGTGATGGTTTCACAGCAGGTAC
AATGGGCGTCCAGGGGCACCGCTGCCACGAACTACCGGTCTCAGCATCAG
CAGCAGCAGCAGGAAGAACAAGAGCAGCAGGGGTACGTGCAAGAGCGATA
CAGCAGCGACAGTCACGAGACGGGGCGCAGCGCGAAGAAGCCCAGGCACC
ACAGGCTGAGGGTCCAGCGAGTCCTCAGCGCCGGCCACATGGATTCCTTG
GCCGACGGGGTTAGCAGTCTAGGGGTCGCTTCCCCCGATGCTGCTGCTGC
CGGTAGTGGCAGCAGCAGTGGCGGTTGGAATCAGGCTGACGCACCACGGA
CGCCGCATGGGTGCACATGGCGGCGAGATAGCTTCGGCGGTCAGACGGAC
GGCTCTCCTCAGACGCTGTGTCCGGTGTCAGCTCTCGGCAGGAGCAACCC
GGGCGGCGGCGTCGTGAGGGCTGGCGTGGGCGCTTGCACCGGGCACATTA
GGACTACGAGGTCTCGCGGGGTGCCACCTGGTGCTGGCGTGGGAGGCGTC
GAGCATTTGCGGTCGAGAAAGCGCAGGAACTGCTCCATCTCGGCGGGGGC
ATCGTTTTACCGGTGAGACAGGTCTACGATAGATTATGTACTGTAATCGT
TGCGGCAGCGGTTCTGTACATGTATGGTTCTTTCCGCTGCTTTTCGTGCC
CGTATTGCTGGCCAGGTGGACAGGCCGCCGGCGTCTATGTCTGTTGGCCC
CCTTTTCGAAGCAAAGGATTCCTGAAACCTGTGGATTTCAGCTTGTGAAA
AGGTAGGCGTGATCTCGTAGACACCTGTCTGTGCGAAGGAACACAACAAC
TCGTTACAGTACTGCTTTCGAAAACTCTTTTTCTTATCCCCTAGGACCGC
CCGAACACCTTCAATGCTACCAGCCGAAGGAACCTTGGCCGGCATGGACA
CAGCATCATTGTCATCGGCAGCAGCCCCGTTCACGCGACGGCTCAAGCGC
GTCGGTGTCGGACACGCCACCGTCAACCTCACCGGCGCCGCCACAACCGC
TGCTGGCCAGAAGAGGGCAGCCACCTGCGGCGTGGAGAGAACAACGAGAG
ACCTCGGCGTGGCTTCTCCTTCGCCGCTGGGCCTTCCCCGTACCTCCTCC
ACCCTCGCCAGGCTTATGCAGCAGGGTGGCGGGAAAGAAGCGCCAGGATT
TGACGCTGCTCTCCGTGCCTCTGCTGCATCTTCTGACGGCAACGCCGGGG
TAGAGGTGGCGGCGGTGGCGGATGCGATCGACGTTGGCGACGACGACAAG
AGCAGCAGCAGCGACGGGGGTGCCGCTCATGAAGACTTGTCGGCGTGGCT
ACACAGCACGCATGACTGGTGGACGTCTGACTGATACAGACACGGTGTCC
TTGGACAAAGGCGGGGAGCGGGGGCGAGGCATCTGCGAAATGTTGGTTTG
GAGGCATCACAGACGGGTGGCGTACGGTACGGTACATCATGACAGGCCTA
CAACGAGGCCCATCCTCTCCACCTTCGCTCGGTCGTGTTTCGATGATGTG
GGTATTTCCCGGGCTGAAGAATTATAGGGGTTTCGGCTTCGTCCAGTGCG
ATGATAAAAAGCTACCCGCTCCTGAGGTTAGTACGTCTCCTAGATACAGG
CCAGGAGGATAGATGGGTAGACATGCCACGTGCGGGCATTCTTTATCTTT
CTTTTTTACGTGACGTACGGCTTGCTGAACAGGCGTGTCACAGTCCAGTG
CGTGGTGCGCCGGCACGCCCGTTTCAGACCGGAACCCCAGGCTTGCTTCC
CCCCGGCGAAAGAGAAGAAAATCGTAGTGTAAAACGGAGGCGGATTGCTG
AATGCAGTATTGTAGCCACCGGGGAATCTTAGGGTCGATAATGTCGACTA
CGGGGTGGGAAGACGCGACAGGCGGCGGGCAGGGCGACAGGGGTCTCCGG
CTTTTATGTTTCGAGGATCACGTGTTTCGGAGTGTACGTGTAGCATCACG
CATGTTTTGGTGCAGAGGATGCCCAAAGCACACAATTAATTTATCTGCAC
GCTGGTGCCTGACAGGTCGCTGGTAGGTTGCAGTTTGCCGCGGCAAAGTG
AATGTTGCGAACCAGGGGGAAGAGGGGGAAGGGAGGAAGAACGTATGATG
CGGGATTGCATGGACGACTCGACAAAGTAGACTTACTGGTGCGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5654:5111..8456-

>mRNA_Ecto-sp13_S_contig5654.16005.1 ID=mRNA_Ecto-sp13_S_contig5654.16005.1|Name=mRNA_Ecto-sp13_S_contig5654.16005.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2115bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5654:5111..8456- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGAGCGTTTGCCCTCTCGCACGGAGATCAGGATGTCAATCGGCTT
CATGAACAACACCACCACCACCGACACACCATCCTCTCCCGAGGCCGTCT
TCGACCACGCCATAGCAATAGCAGAAGAGCGCTCTGCTGGAGGAGGCAGG
CAGCCGTGCCCACAGCAGCGCCGCTCGACCAGAGGGGTGAACGCGGTACA
CTTGCTGCCCGGTCCGTACAACAATGCCTCGGCTTTCGGGGCCAACGAGC
TAGCACCACGGCCGTCGACATCACGAGCGAGAGGGACACGGCAGGTCAAC
GAGGAGCATCGCGACGGACACACATTTGGTACCAGCTGGCCTACTGCTAC
AGATATACCGGCGGCACGCGACGCTGCTGCTGCTGGTGCTTGGGCGGGAC
AGGACGGCTTCCACACCCCAACCGGGTCGCGGTTTTTCGGCGACAGCACG
CCGGCAAACAACTGGGTCCGTTTCGCTTGGGAACCACTGCCGGGAGGGAC
ACAGTACGGCGCGACCGCGGTCGTGTTTCCGCCCGATCCGGCCGCCGCCG
GTGGTGGTAATAGCGACGGTAGTGTTGCCGGAGGCACAACAGGTACGACG
ATGCTGCTTCCTCTCGATGAGCTCTGGGAAGGTCCTGCCGACCGAAACTC
CGACGAAAGCAGTGTTTGCGTCAAGCGCTTCCGACCTGAAGCCGGACAGA
ACAGCATCATCGGCGGGAGGAGATACGAAGGGGGAGAGAAGCATATGGAT
TGGACGAAAACCCCTTCAGGTTCGTCTCGACGCCGGTGCCTGCCCGGACT
CGAACAGTTCGCCGTCGCCGGTGCGACGCGGCAGGCTGCAAGAACGCCAC
AACCTTCGCTTCACGCAAGACCACGGACGTCGAGGACAATCACTGAGGCT
GCAGGGAGAACGGGCACGGAACATCGTCCGCTGCCCGCCGCGGACGAGAG
AACGAGGAGGGGATGTGGGCCCGGGGGCGGCAACATACGATCAAGCTCTT
GGGGCGGAGACGTGGCGATGGACCCAACGCGACAAGAAGAGGTGATGGTT
TCACAGCAGGTACAATGGGCGTCCAGGGGCACCGCTGCCACGAACTACCG
GTCTCAGCATCAGCAGCAGCAGCAGGAAGAACAAGAGCAGCAGGGGTACG
TGCAAGAGCGATACAGCAGCGACAGTCACGAGACGGGGCGCAGCGCGAAG
AAGCCCAGGCACCACAGGCTGAGGGTCCAGCGAGTCCTCAGCGCCGGCCA
CATGGATTCCTTGGCCGACGGGGTTAGCAGTCTAGGGGTCGCTTCCCCCG
ATGCTGCTGCTGCCGGTAGTGGCAGCAGCAGTGGCGGTTGGAATCAGGCT
GACGCACCACGGACGCCGCATGGGTGCACATGGCGGCGAGATAGCTTCGG
CGGTCAGACGGACGGCTCTCCTCAGACGCTGTGTCCGGTGTCAGCTCTCG
GCAGGAGCAACCCGGGCGGCGGCGTCGTGAGGGCTGGCGTGGGCGCTTGC
ACCGGGCACATTAGGACTACGAGGTCTCGCGGGGTGCCACCTGGTGCTGG
CGTGGGAGGCGTCGAGCATTTGCGGTCGAGAAAGCGCAGGAACTGCTCCA
TCTCGGCGGGGGCATCGTTTTACCGGACCGCCCGAACACCTTCAATGCTA
CCAGCCGAAGGAACCTTGGCCGGCATGGACACAGCATCATTGTCATCGGC
AGCAGCCCCGTTCACGCGACGGCTCAAGCGCGTCGGTGTCGGACACGCCA
CCGTCAACCTCACCGGCGCCGCCACAACCGCTGCTGGCCAGAAGAGGGCA
GCCACCTGCGGCGTGGAGAGAACAACGAGAGACCTCGGCGTGGCTTCTCC
TTCGCCGCTGGGCCTTCCCCGTACCTCCTCCACCCTCGCCAGGCTTATGC
AGCAGGGTGGCGGGAAAGAAGCGCCAGGATTTGACGCTGCTCTCCGTGCC
TCTGCTGCATCTTCTGACGGCAACGCCGGGGTAGAGGTGGCGGCGGTGGC
GGATGCGATCGACGTTGGCGACGACGACAAGAGCAGCAGCAGCGACGGGG
GTGCCGCTCATGAAGACTTGTCGGCGTGGCTACACAGCACGCATGACTGG
TGGACGTCTGACTGA
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