mRNA_Ecto-sp13_S_contig56535.16004.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig56535.16004.1
Unique NamemRNA_Ecto-sp13_S_contig56535.16004.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A6H5L214_9PHAE (Plug_translocon domain-containing protein n=3 Tax=PX clade TaxID=569578 RepID=A0A6H5L214_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.250e-24
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG
Sbjct:  116 KLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 171
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A7S2XXJ1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXJ1_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 8.220e-23
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILITIGEAVAYVVSGMYGDL TLGAGNAILII QLFFAGLIVIILDELLQKG
Sbjct:  116 KLFGILITIGEAVAYVVSGMYGDLGTLGAGNAILIIAQLFFAGLIVIILDELLQKG 171
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A6V2TM26_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2TM26_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 2.020e-21
Identity = 47/56 (83.93%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILIT+GEAVAYV+SGMYGDL+TLGAGNA+LII QLFFAGL+V++LDELLQKG
Sbjct:  116 KLFGILITLGEAVAYVISGMYGDLATLGAGNALLIITQLFFAGLVVLLLDELLQKG 171
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A482RU87_9ARCH (Preprotein translocase subunit SecY n=2 Tax=cellular organisms TaxID=131567 RepID=A0A482RU87_9ARCH)

HSP 1 Score: 94.0 bits (232), Expect = 2.520e-21
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILITIGEA+AYVVSGMYGDL+TLGAGNAILII QLF AG++VIILDELLQKG
Sbjct:   43 KLFGILITIGEAIAYVVSGMYGDLATLGAGNAILIILQLFAAGMVVIILDELLQKG 98
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A0G4G804_VITBC (Plug_translocon domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4G804_VITBC)

HSP 1 Score: 94.4 bits (233), Expect = 2.790e-21
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFG+LITIGEA+AYVVSGMYGDL  LGAGNAILII QLFFAGLIVIILDELLQKG
Sbjct:  120 KLFGMLITIGEAIAYVVSGMYGDLKELGAGNAILIILQLFFAGLIVIILDELLQKG 175
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A7S4MCE0_9STRA (Hypothetical protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4MCE0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.260e-21
Identity = 47/56 (83.93%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILIT+GEA+AYVVSGMYGDL+T+GAGNA+LII QLFFAGLIV+ LDELLQKG
Sbjct:  116 KLFGILITVGEAIAYVVSGMYGDLATIGAGNALLIISQLFFAGLIVLTLDELLQKG 171
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A7S1MN71_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1MN71_ALECA)

HSP 1 Score: 87.8 bits (216), Expect = 6.390e-21
Identity = 44/56 (78.57%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFG+LIT+GEAVAYV+SGMYGDL  LGAGN++LII QLFFAG+IVI+LDEL+QKG
Sbjct:   58 KLFGMLITMGEAVAYVMSGMYGDLRELGAGNSLLIIMQLFFAGIIVILLDELMQKG 113
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A0G4FL78_9ALVE (Plug_translocon domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FL78_9ALVE)

HSP 1 Score: 92.0 bits (227), Expect = 1.880e-20
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFG+LITIGEAVAYV+SGMYGD+S LG GNAILII QLFFAG+IVIILDELLQKG
Sbjct:  119 KLFGMLITIGEAVAYVISGMYGDVSELGVGNAILIILQLFFAGVIVIILDELLQKG 174
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A8J5XI08_DIALT (Plug_translocon domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI08_DIALT)

HSP 1 Score: 91.3 bits (225), Expect = 3.630e-20
Identity = 48/56 (85.71%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILITIGEAVAYV+SGMYGD+  LGAGNA+LII QLF AGLIVIILDELLQKG
Sbjct:  121 KLFGILITIGEAVAYVISGMYGDVRELGAGNAVLIIIQLFIAGLIVIILDELLQKG 176
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BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Match: A0A7S1D8Y6_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D8Y6_CYCTE)

HSP 1 Score: 89.7 bits (221), Expect = 6.710e-20
Identity = 46/56 (82.14%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILDELLQKG 168
            +LFGILIT+GEA+AYVVSGMYGDL ++GAGNAILII QLF AGLIV+ LDELLQKG
Sbjct:  122 KLFGILITVGEAIAYVVSGMYGDLGSIGAGNAILIIAQLFCAGLIVLTLDELLQKG 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig56535.16004.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L214_9PHAE1.250e-2498.21Plug_translocon domain-containing protein n=3 Tax=... [more]
A0A7S2XXJ1_9STRA8.220e-2394.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V2TM26_HETAK2.020e-2183.93Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A482RU87_9ARCH2.520e-2187.50Preprotein translocase subunit SecY n=2 Tax=cellul... [more]
A0A0G4G804_VITBC2.790e-2189.29Plug_translocon domain-containing protein n=3 Tax=... [more]
A0A7S4MCE0_9STRA5.260e-2183.93Hypothetical protein n=2 Tax=Bacillariophyta TaxID... [more]
A0A7S1MN71_ALECA6.390e-2178.57Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A0G4FL78_9ALVE1.880e-2085.71Plug_translocon domain-containing protein n=1 Tax=... [more]
A0A8J5XI08_DIALT3.630e-2085.71Plug_translocon domain-containing protein n=1 Tax=... [more]
A0A7S1D8Y6_CYCTE6.710e-2082.14Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig56535contigEcto-sp13_S_contig56535:706..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score103.2
Seed ortholog evalue4.1e-20
Seed eggNOG ortholog2880.D7FWL7
Preferred nameSEC61A1
Model size171
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
Exons1
EggNOG free text desc.protein transport
EggNOG OGsCOG0201@1,KOG1373@2759
Cds size171
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463783.226767-CDS-Ecto-sp13_S_contig56535:705..8761681463783.226767-CDS-Ecto-sp13_S_contig56535:705..876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig56535 706..876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig56535.16004.1prot_Ecto-sp13_S_contig56535.16004.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig56535 706..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig56535.16004.1

>prot_Ecto-sp13_S_contig56535.16004.1 ID=prot_Ecto-sp13_S_contig56535.16004.1|Name=mRNA_Ecto-sp13_S_contig56535.16004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
QLFGILITIGEAVAYVVSGMYGDLSTLGAGNAILIICQLFFAGLIVIILD
ELLQKG*
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mRNA from alignment at Ecto-sp13_S_contig56535:706..876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig56535.16004.1 ID=mRNA_Ecto-sp13_S_contig56535.16004.1|Name=mRNA_Ecto-sp13_S_contig56535.16004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56535:706..876+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTCTTCGGTATCTTGATCACGATCGGAGAGGCCGTGGCGTACGTGGT
GTCTGGCATGTACGGCGACCTGTCTACCCTCGGTGCCGGTAACGCCATCC
TCATCATCTGCCAGCTCTTCTTCGCTGGGCTTATCGTTATCATCCTCGAC
GAGCTGCTGCAAAAGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig56535:706..876+

>mRNA_Ecto-sp13_S_contig56535.16004.1 ID=mRNA_Ecto-sp13_S_contig56535.16004.1|Name=mRNA_Ecto-sp13_S_contig56535.16004.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig56535:706..876+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCTCTTCGGTATCTTGATCACGATCGGAGAGGCCGTGGCGTACGTGGT
GTCTGGCATGTACGGCGACCTGTCTACCCTCGGTGCCGGTAACGCCATCC
TCATCATCTGCCAGCTCTTCTTCGCTGGGCTTATCGTTATCATCCTCGAC
GAGCTGCTGCAAAAGGGGTGA
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