mRNA_Ecto-sp13_S_contig10.16.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10.16.1
Unique NamemRNA_Ecto-sp13_S_contig10.16.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: D7FV03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV03_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 3.230e-44
Identity = 69/72 (95.83%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 MARAADNKDLRQIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQVS 216
            MARAADNKDLRQIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVK+WHGVTVNAGSLVSLNL+SNDL+VS
Sbjct:    1 MARAADNKDLRQIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKKWHGVTVNAGSLVSLNLMSNDLEVS 72
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: D8LJ86_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ86_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 8.710e-17
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:   40 RRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVN-AGSLVSLNLISNDLQ 210
            RR+ANQ L D+++ LGGD W+ + GWL PG+DV+ WHG+T+  +G LVS+NLISNDL+
Sbjct:   33 RRMANQGLQDLYDWLGGDNWKCRDGWLDPGSDVREWHGLTITTSGDLVSINLISNDLE 90
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: A0A329RHR8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RHR8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 8.960e-10
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   58 ALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQ 210
            ALV++++AL GDRWR + GW  P  D ++W GV V  G +V+L L +N+L 
Sbjct:   15 ALVELYDALNGDRWRRRDGWKQPTRDPEQWFGVEVAMGHVVALELPANELS 65
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: A0A3F2RJP5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RJP5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.250e-9
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   58 ALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQ 210
            ALV++++ALGGDRWR + GW  P  D ++W GV V  G +V+L L +N+L 
Sbjct:  243 ALVEIYDALGGDRWRRRDGWKQPTQDPEQWFGVEVTMGHVVALELPANELS 293
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: A0A484DS87_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DS87_BRELC)

HSP 1 Score: 61.2 bits (147), Expect = 3.040e-9
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   55 QALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQ 210
            +ALVD+++AL GDRWR + GW  P  D K W GV V  G +V+L L +N+L 
Sbjct:   14 KALVDLYDALNGDRWRRRDGWKQPTRDPKHWFGVEVVMGHVVALELPTNELS 65
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: K3WE76_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WE76_GLOUD)

HSP 1 Score: 61.2 bits (147), Expect = 3.100e-9
Identity = 24/51 (47.06%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   55 QALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDL 207
            QAL+++++ALGGDRWR +  W  P  DV+ W+GV V  G +V++ L +N+L
Sbjct:   14 QALLELYDALGGDRWRRRDAWKQPTVDVESWYGVDVMMGHVVAIELPANEL 64
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: G4YS16_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4YS16_PHYSP)

HSP 1 Score: 60.8 bits (146), Expect = 4.230e-9
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   58 ALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQ 210
            ALV++++ALGGDRWR + GW  P  D ++W GV V  G +V+L L +N+L 
Sbjct:   15 ALVELYDALGGDRWRRRDGWKQPTRDPEQWFGVEVAMGHVVALELPANELS 65
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: H3GFP3_PHYRM (Crinkler domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GFP3_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 4.420e-9
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:   58 ALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQ 210
            ALV++++ALGGDRWR + GW  P  D ++W GV V  G +V+L L +N+L 
Sbjct:   15 ALVELYDALGGDRWRRRDGWKQPTRDPEQWFGVEVAMGHVVALELPANELS 65
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: D0NG45_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NG45_PHYIT)

HSP 1 Score: 60.5 bits (145), Expect = 5.160e-9
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   58 ALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDLQ 210
            ALVD+++AL GDRWR + GW  P  D + W+GV V  G +V+L L +N+L 
Sbjct:   15 ALVDLYDALNGDRWRRRDGWKQPTRDPEHWYGVKVVMGHVVALELPANELS 65
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BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Match: A0A662XZS6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZS6_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.490e-8
Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:   58 ALVDVFNALGGDRWRNKSGWLTPGTDVKRWHGVTVNAGSLVSLNLISNDL 207
            ALV++F+ALGGD+WR + GW  P  D ++W GV V  G +V++ L +N+L
Sbjct:   15 ALVELFDALGGDKWRRRDGWKQPTRDPEQWFGVEVVLGHVVAIELPANEL 64
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV03_ECTSI3.230e-4495.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LJ86_ECTSI8.710e-1758.62Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
A0A329RHR8_9STRA8.960e-1047.06Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A3F2RJP5_9STRA1.250e-949.02Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A484DS87_BRELC3.040e-950.00Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
K3WE76_GLOUD3.100e-947.06Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
G4YS16_PHYSP4.230e-949.02Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
H3GFP3_PHYRM4.420e-949.02Crinkler domain-containing protein n=1 Tax=Phytoph... [more]
D0NG45_PHYIT5.160e-949.02Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A662XZS6_9STRA1.490e-848.00Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10contigEcto-sp13_S_contig10:64756..65101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score62.0
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.2873
Model size222
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Leucine rich repeat
EggNOG OGs2R960@2759,3QCRM@4776,COG4886@1
Ec32 ortholog descriptionConserved hypothetical protein
Ec32 orthologEc-13_002040.1
Cds size222
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462498.6465032-CDS-Ecto-sp13_S_contig10:64755..647861681462498.6465032-CDS-Ecto-sp13_S_contig10:64755..64786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10 64756..64786 +
1681462498.6810005-CDS-Ecto-sp13_S_contig10:64910..651011681462498.6810005-CDS-Ecto-sp13_S_contig10:64910..65101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10 64911..65101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10.16.1prot_Ecto-sp13_S_contig10.16.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10 64756..65101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10.16.1

>prot_Ecto-sp13_S_contig10.16.1 ID=prot_Ecto-sp13_S_contig10.16.1|Name=mRNA_Ecto-sp13_S_contig10.16.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MARAADNKDLRQIRRLANQALVDVFNALGGDRWRNKSGWLTPGTDVKRWH
GVTVNAGSLVSLNLISNDLQVSF*
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mRNA from alignment at Ecto-sp13_S_contig10:64756..65101+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10.16.1 ID=mRNA_Ecto-sp13_S_contig10.16.1|Name=mRNA_Ecto-sp13_S_contig10.16.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=346bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10:64756..65101+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGGGCAGCAGACAACAAAGACTTAAGTAAGATATAGTTTTATCC
GTTGACTTCTTGTGACAGTAGATGCTCCTGTAGGTAGGTGTTCAATAGGT
TGACCACAAACCTGATTCCCCCGCGGTCGTCGGCATCTCGCGTTGCTCCT
CACAGGGCAAATACGGCGACTGGCAAATCAAGCCCTGGTCGATGTCTTCA
ACGCGCTTGGGGGTGATCGATGGCGAAACAAAAGCGGCTGGCTCACACCT
GGAACAGACGTAAAGAGATGGCACGGGGTGACCGTAAACGCAGGAAGCCT
TGTGTCGCTCAACTTGATCAGCAACGACTTACAGGTGAGTTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10:64756..65101+

>mRNA_Ecto-sp13_S_contig10.16.1 ID=mRNA_Ecto-sp13_S_contig10.16.1|Name=mRNA_Ecto-sp13_S_contig10.16.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10:64756..65101+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGGGCAGCAGACAACAAAGACTTAAGGCAAATACGGCGACTGGC
AAATCAAGCCCTGGTCGATGTCTTCAACGCGCTTGGGGGTGATCGATGGC
GAAACAAAAGCGGCTGGCTCACACCTGGAACAGACGTAAAGAGATGGCAC
GGGGTGACCGTAAACGCAGGAAGCCTTGTGTCGCTCAACTTGATCAGCAA
CGACTTACAGGTGAGTTTTTGA
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