mRNA_Ecto-sp13_S_contig10133.160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10133.160.1
Unique NamemRNA_Ecto-sp13_S_contig10133.160.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: D7FYE3_ECTSI (SUN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYE3_ECTSI)

HSP 1 Score: 553 bits (1425), Expect = 2.180e-185
Identity = 308/346 (89.02%), Postives = 316/346 (91.33%), Query Frame = 1 
Query:    4 EGGAYVRLVEDAGLSAAAAADAAAAADGDRSLQTRVEAIAAQEVALKWGEAEATGEHGGGGAVSREAGVLVTVEEAEELIAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPVAPAYNGEEQQGVGMVENKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDGDAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXX-----AGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHVLLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGAWTCLYGFRVHGDPI 1026
            EGGAYVRLVEDAGLSA+ AADAAAAADGDR+LQTRVEAIAAQEVALKWGEAEATGEHGG  AVS+EAGVL TVEEAEEL+AREVEMFSSGGTGMPDYASLTPGAKVVYGPFPVAPAY+GE QQG GMVE KGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDGDAALSASNSLGSCFAFKGGEGRLTVELARP  XXXXXXXXXXXXXX     AGFVRVTHVSIEHARAASAPTAAQSAPRAFR+LGWDADPA  AT TASL         EALL PHVLLAGAEY+VGEGAPGVQTFAV EGRGEEA A VPPVGWVTLEVQSNHGGAWTCLYGFRVHGDP+
Sbjct:  183 EGGAYVRLVEDAGLSASTAADAAAAADGDRNLQTRVEAIAAQEVALKWGEAEATGEHGGRDAVSKEAGVLATVEEAEELVAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPVAPAYDGEAQQGDGMVEKKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDGDAALSASNSLGSCFAFKGGEGRLTVELARPXXXXXXXXXXXXXXXXXXXXAAGFVRVTHVSIEHARAASAPTAAQSAPRAFRILGWDADPAGTATTTASLXXXXXXXXXEALLSPHVLLAGAEYQVGEGAPGVQTFAVGEGRGEEAQAVVPPVGWVTLEVQSNHGGAWTCLYGFRVHGDPV 528
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: A0A7S2BK74_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BK74_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.090e-7
Identity = 53/174 (30.46%), Postives = 68/174 (39.08%), Query Frame = 1 
Query:  499 DAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXXAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHVLLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGAWTCLYGFRVHGD 1020
            D A++     G CFAF  G G LTV L R                    +R T V+IEH   A A     SAPR F+V G+  +                    E    P VLL   EY++      VQ +        +      PV    LE+ SN+G  +TCLY FRVH +
Sbjct:   90 DEAINQRVDKGHCFAFATGSGNLTVRLERS-------------------IRPTAVTIEHLNPAFAALGGASAPRQFKVWGYSGEE-------------------ELETGPGVLLVEGEYKIQHDDGPVQVY-------RDLNQVSHPVALTRLEILSNYGHEFTCLYRFRVHAE 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: A0A6A3US52_9STRA (SUN domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3US52_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-6
Identity = 76/283 (26.86%), Postives = 116/283 (40.99%), Query Frame = 1 
Query:  205 GVLVTVEEAEELIAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPV------APAYNGEEQQGVGMVENKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDG--DAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXXAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHV-LLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGA-WTCLYGFRVHGDP 1023
            G+L  +E A + +  E++      TG  D+A+L  GA V+     +      +PA    +  G+    N G  TS +       +   LL    +P  +   +G  + ALS +  +GSC+   G  GRL+V+ A+ +               A  + + H+    A+ AS  T   SAP+ FR++G    P                      LR  V L++   +      P  QTF +       A      +  +TLEV SNHG   +TCLY FRVHG P
Sbjct:  423 GILRVIEVAVQAV--EIKK-----TGRVDHAALANGASVISSERDLLYQDNSSPALFLTQLFGLNDPANDGRFTSPSFRRAPAPFLGQLLSSGEIPWWLSRHNGRPETALSETMEMGSCWGIAGSSGRLSVKFAQQI--------------VADAITIDHIP---AQIASDFT---SAPKDFRIMGISGHP----------------------LRETVELISFGNFSYASNGPASQTFKLTSPSQRSA------IDGITLEVLSNHGNPEYTCLYRFRVHGQP 650
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: G4YZ67_PHYSP (SUN domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZ67_PHYSP)

HSP 1 Score: 63.2 bits (152), Expect = 1.990e-6
Identity = 74/283 (26.15%), Postives = 113/283 (39.93%), Query Frame = 1 
Query:  205 GVLVTVEEAEELIAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPVAPAYNGEEQQ------GVGMVENKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDG--DAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXXAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHV-LLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGA-WTCLYGFRVHGDP 1023
            G+L  +E A + +  E++      TG  D+A+L  GA V++    +    +    Q      G+  V + G  TS +       +   LL    +P  +   +G  + ALS +  +GSC+   G  GRL+V+ A+ +               A  + + H+  + A   S      SAP  FRVLG    P                      LR  V  +    +      P  QTF +     + +A     +  +TLEV SNHG   +TCLY FRVHG P
Sbjct:  429 GILRVIEVAVQAV--EIKK-----TGRVDHAALANGASVIHSERDLLYQESSSPVQLLTQLFGLYNVGDDGRFTSPSFRHAPAPFLGQLLSSGEIPWWLSRHNGRPETALSETMEMGSCWGISGSSGRLSVKFAQQI--------------VADAITIDHIPAQIASDFS------SAPNEFRVLGISGHP----------------------LRETVEFVPFGNFSYASNGPASQTFKLTSPLSQRSA-----IDGITLEVLSNHGNPEYTCLYRFRVHGQP 657
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: D0NXG7_PHYIT (SUN domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NXG7_PHYIT)

HSP 1 Score: 61.6 bits (148), Expect = 5.930e-6
Identity = 73/283 (25.80%), Postives = 113/283 (39.93%), Query Frame = 1 
Query:  205 GVLVTVEEAEELIAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPV------APAYNGEEQQGVGMVENKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDG--DAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXXAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHV-LLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGA-WTCLYGFRVHGDP 1023
            G+L  +E A + +  E++      TG  D+A+L  GA V++    +      +P     +  G+   +     TS +       +   LL     P  +   +G  + ALS +  +GSC+   G  GRL+V+ A+ +               A  + + H+  + A   S      SAP  FRVLG    P                      LR  V L++   +      P  QTF +     + +A     +  +TLEV SNHG   +TCLY FRVHG P
Sbjct:  425 GILRVIEVAVQAV--EIKK-----TGRVDHAALANGASVIHSERDLLYQDSSSPVQLLAQLVGLSDSDGDSRFTSPSYRRAPAPFLGQLLSSGENPWWLSRHNGRPETALSETMEIGSCWGISGSSGRLSVKFAQQI--------------VADAITIDHIPAQIASDFS------SAPNQFRVLGISGHP----------------------LRETVELISFGNFSYASNGPASQTFKLTSSLSQRSA-----IDGITLEVLSNHGNPEYTCLYRFRVHGQP 653
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: A0A329SQV9_9STRA (SUN domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SQV9_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.040e-5
Identity = 73/283 (25.80%), Postives = 111/283 (39.22%), Query Frame = 1 
Query:  205 GVLVTVEEAEELIAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPVAPAYNGEEQQ------GVGMVENKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDG--DAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXXAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHV-LLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGA-WTCLYGFRVHGDP 1023
            G+L  +E A + +  E++      TG  D+A+L  GA V++    +    +    Q      G+   ++ G  TS +           LL     P  +   +G  + ALS +  +GSC+   G  GRL+V+ A+ +               A  + + H+  + A   S      SAP  FRVLG    P                      LR  V  +    +      P  QTF +     + +A     +  +TLEV SNHG   +TCLY FRVHG P
Sbjct:  423 GILRVIEVAVQAV--EIKK-----TGRVDHAALANGASVIHSERDLLYQDSSSPVQLLTHLVGLSDSDDDGRFTSPSYRRAPAPLLGQLLSSGENPWWLSRHNGRPETALSETMEMGSCWGITGSSGRLSVKFAQQI--------------VADAITIDHIPAQIASDFS------SAPNEFRVLGISGHP----------------------LRETVEFIPFGNFSYASNGPASQTFKLTSPLSQRSA-----IDGITLEVLSNHGNPEYTCLYRFRVHGQP 651
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Match: W2RBI0_PHYPN (SUN domain-containing protein n=25 Tax=Phytophthora TaxID=4783 RepID=W2RBI0_PHYPN)

HSP 1 Score: 58.9 bits (141), Expect = 4.040e-5
Identity = 71/283 (25.09%), Postives = 113/283 (39.93%), Query Frame = 1 
Query:  205 GVLVTVEEAEELIAREVEMFSSGGTGMPDYASLTPGAKVVYGPFPV------APAYNGEEQQGVGMVENKGWLTSKTLASTELEWHDYLLHMLRVPGRVYAEDG--DAALSASNSLGSCFAFKGGEGRLTVELARPLPXXXXXXXXXXXXXXAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDADPASAATITASLVGGGGDGGGEALLRPHV-LLAGAEYRVGEGAPGVQTFAVAEGRGEEAAAAVPPVGWVTLEVQSNHGGA-WTCLYGFRVHGDP 1023
            G+L  +E A + +  E++      TG  D+A+L  GA V++    +      +P     +  G+   ++ G  TS +       +   LL     P  +   +G  + ALS +  +GSC+   G  GRL+++ A+ +               A  + + H+  + A   S      SAP  FRVLG    P                      LR  V  +    +      P  QTF +     + +A     +  +TL+V SNHG   +TCLY FRVHG P
Sbjct:  425 GILRVIEVAVQAV--EIKK-----TGRVDHAALANGASVIHSERDLLYQDSSSPVQLLTQLAGLSDPDDDGRFTSPSYRRAPAPFLGQLLSSGENPWWLSRHNGRPETALSETMEIGSCWGIAGSSGRLSLKFAQQI--------------VADAITIDHIPAQIAADFS------SAPNKFRVLGISGHP----------------------LRETVEFIPFGNFSYASNGPASQTFKLTSPLSQRSA-----IDGITLDVLSNHGNPEYTCLYRFRVHGQP 653
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10133.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FYE3_ECTSI2.180e-18589.02SUN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2BK74_9STRA3.090e-730.46Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A3US52_9STRA1.970e-626.86SUN domain-containing protein n=2 Tax=Phytophthora... [more]
G4YZ67_PHYSP1.990e-626.15SUN domain-containing protein n=1 Tax=Phytophthora... [more]
D0NXG7_PHYIT5.930e-625.80SUN domain-containing protein n=2 Tax=Phytophthora... [more]
A0A329SQV9_9STRA4.040e-525.80SUN domain-containing protein n=1 Tax=Phytophthora... [more]
W2RBI0_PHYPN4.040e-525.09SUN domain-containing protein n=25 Tax=Phytophthor... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10133contigEcto-sp13_S_contig10133:502..4032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score60.5
Seed ortholog evalue1.8e-06
Seed eggNOG ortholog4787.PITG_17997T0
Preferred nameSUN3
Model size2730
KEGG koko:K06545,ko:K19347,ko:K21874,ko:K21875,ko:K21876
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005856,GO:0005874,GO:0005929,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007049,GO:0007059,GO:0007127,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008360,GO:0009524,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0019866,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031224,GO:0031514,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032878,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034992,GO:0034993,GO:0036126,GO:0042175,GO:0042802,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043495,GO:0043621,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044821,GO:0045132,GO:0045141,GO:0045143,GO:0045185,GO:0046605,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051303,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051656,GO:0051704,GO:0051726,GO:0061024,GO:0061842,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0070192,GO:0070197,GO:0070507,GO:0070727,GO:0071840,GO:0090220,GO:0090286,GO:0090435,GO:0097223,GO:0097224,GO:0097240,GO:0097729,GO:0098796,GO:0098813,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0106083,GO:0106094,GO:0120025,GO:0120038,GO:0140013,GO:1903046,GO:2000769
Exons3
EggNOG free text desc.cytoskeletal anchoring at nuclear membrane
EggNOG OGs3QBKP@4776,KOG2687@1,KOG2687@2759
Ec32 ortholog descriptionSUN domain
Ec32 orthologEc-08_003710.1
Cds size1032
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462509.8256478-CDS-Ecto-sp13_S_contig10133:501..6331681462509.8256478-CDS-Ecto-sp13_S_contig10133:501..633Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10133 502..633 +
1681462509.843088-CDS-Ecto-sp13_S_contig10133:958..10841681462509.843088-CDS-Ecto-sp13_S_contig10133:958..1084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10133 959..1084 +
1681462509.858951-CDS-Ecto-sp13_S_contig10133:1560..23341681462509.858951-CDS-Ecto-sp13_S_contig10133:1560..2334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10133 1561..2334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462509.870846-UTR-Ecto-sp13_S_contig10133:2334..40321681462509.870846-UTR-Ecto-sp13_S_contig10133:2334..4032Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10133 2335..4032 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10133.160.1prot_Ecto-sp13_S_contig10133.160.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10133 502..2334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10133.160.1

>prot_Ecto-sp13_S_contig10133.160.1 ID=prot_Ecto-sp13_S_contig10133.160.1|Name=mRNA_Ecto-sp13_S_contig10133.160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=344bp
QEGGAYVRLVEDAGLSAAAAADAAAAADGDRSLQTRVEAIAAQEVALKWG
EAEATGEHGGGGAVSREAGVLVTVEEAEELIAREVEMFSSGGTGMPDYAS
LTPGAKVVYGPFPVAPAYNGEEQQGVGMVENKGWLTSKTLASTELEWHDY
LLHMLRVPGRVYAEDGDAALSASNSLGSCFAFKGGEGRLTVELARPLPPP
PGDEKPAAAAAAAGFVRVTHVSIEHARAASAPTAAQSAPRAFRVLGWDAD
PASAATITASLVGGGGDGGGEALLRPHVLLAGAEYRVGEGAPGVQTFAVA
EGRGEEAAAAVPPVGWVTLEVQSNHGGAWTCLYGFRVHGDPIH*
back to top

mRNA from alignment at Ecto-sp13_S_contig10133:502..4032+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10133.160.1 ID=mRNA_Ecto-sp13_S_contig10133.160.1|Name=mRNA_Ecto-sp13_S_contig10133.160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10133:502..4032+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGGCGGCGCGTACGTCCGCCTGGTAGAGGACGCCGGGCTATCTGC
CGCTGCCGCTGCCGATGCCGCCGCCGCTGCGGACGGGGATCGAAGCCTGC
AGACGAGGGTCGAGGCCATCGCTGCCCAAGAGGTAGGGGAAGTGCTGCAT
AGGGTTGGTGTCCGAGGAGTGTTGGTCCTTCCCTTGCTATCGCTGCCGCT
GCTGCCGCTGTTGCCGCTGTTGCCGCTGCTGTGGTTGCTGCTGTTGCAGC
TGTTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCACGCTGCCGCT
GCTGTGGCTGCTTCTTCGGCGTTGTGACCGCCGCCTGACATGTAGTGTTG
AGAGCTAGCTCTGCTCCTGGTTTCCGCTGCTGGTGCTGGTGCTGGTGCTG
GTGCTGTTTTGATGCCGCATGTTGCTTTCTACGCACCGTCTGTATGGGCT
GGGACAGGTTGCGCTTAAGTGGGGAGAGGCTGAGGCCACGGGTGAGCACG
GCGGAGGGGGCGCTGTGTCTAGGGAGGCAGGAGTATTGGTGACTGTCGAG
GAAGCCGAGGAGCTCATTGCCCGGGAAGTAGAGGTACGTGCACACACCGG
CGCTTTTTTTGCATCGCGATCCCGCTGTCCCCTTTCCATGAGACGTGTGA
ATGGGGTATGTGGCTTGGTTCCGTGCAAGACAAGAGTGCATGCCGCTGCT
TCGTTTCCACGAAACCCAGCTTTGGTTCTGTGCAAGCACTGGTGTTTTGT
ACCGCATATCAGCCCCATTGTCATGTTGGGACTCTCTCTGAAGCCACTGT
CGTTTTATCATGTGTTGTCGGGTTGCGTTGGGCATAGCCTTGTCGCATCG
ATACCAGCCTACCCGATGCTATGCGCGCGGAACTAGCTCCTCTGCCGGCC
GGTATGTTGGGTGGCACCTCTTCGCCCTCCGTCCTCCGTCTTCTCGAGGA
CGCGTGGTCAATGATCTAGTCGCGGAGACATGAAAACGCCCCCCCCCCCC
CGTTAATCGTGTTCCTCCTTGCCCCATGACCGCGCCGACTTTCCGATGAG
CACCGTCAGATGTTCTCGTCGGGGGGCACGGGAATGCCGGACTACGCTTC
CCTTACCCCCGGAGCCAAAGTCGTTTACGGCCCTTTCCCCGTGGCGCCTG
CCTACAACGGTGAGGAACAGCAGGGCGTCGGCATGGTCGAGAACAAGGGG
TGGCTCACGTCCAAGACCCTGGCGAGCACTGAGCTGGAGTGGCACGACTA
CCTGCTGCACATGCTCAGGGTGCCCGGCCGGGTGTACGCCGAGGACGGCG
ACGCTGCGCTGTCGGCCTCCAACTCCCTCGGCTCCTGCTTCGCGTTCAAG
GGCGGAGAGGGGAGGCTGACCGTCGAGCTCGCTCGCCCACTTCCGCCGCC
GCCAGGAGATGAAAAGCCCGCTGCGGCGGCGGCGGCAGCCGGGTTCGTCA
GGGTCACCCACGTGTCCATCGAGCACGCGCGCGCCGCATCCGCTCCGACG
GCGGCGCAGAGCGCCCCCCGCGCCTTCAGGGTGCTGGGCTGGGACGCCGA
CCCCGCCAGCGCGGCGACGATCACGGCTTCTCTCGTCGGAGGTGGGGGCG
ACGGAGGGGGGGAGGCGCTGTTGCGGCCGCACGTGCTCCTGGCCGGCGCC
GAGTACCGGGTCGGGGAAGGGGCTCCGGGGGTGCAGACGTTCGCCGTGGC
GGAGGGGAGAGGGGAGGAGGCGGCGGCGGCGGTGCCCCCCGTTGGATGGG
TTACGCTTGAGGTGCAGAGCAACCACGGTGGGGCGTGGACCTGCCTCTAC
GGCTTCCGCGTACACGGTGACCCGATCCATTGAGCCGGCGTTGAGGGTTG
GGGAGGGGGGGGAAGCGCTTTTCAAGGCTGGCGCGATGCACGTCGGCTTG
CTGTCATGCGTGTATCGGCGAGAAGTCTGGTCGGTTGTCTGTATCGGTAG
GATGGGCTGGCGTAGGGGCCTGTTTTTTTGTTGTGTAGGTCTTGTTGGCG
TGGCTGGGTGCTCGCGTGGTGACAGAAAGCCTCAGGGATTCGCTCACGGG
TTTGGGTGGGGGGAATCACGTTTGCCGGCATAGCGGCCACTAGAAGGGGC
GCGGCGGGTGGTCGGGAGTGATGCAGCTGTGGCTTAGTGTTTTGTCTTAT
CCTAGATGCTATCGTAAGAGTGTTCATCAGGTCGTGATTGACCGTTGAGT
GGTGGCGTGTGAGAGACCGTGTGGAATTTTCTTTCTGGATCCTTGAGGAG
GGAAAGGAGACGCGTGCATTCCCAGGAGGTTTCAGGAGCAGGGGATGCGT
TACGGGTTGTTTTATTGGGTGGTCTTAGCGCGAGAGAGCATCTTATGCTT
TTTACATGCACTGCGCGGCACACGGCAAAGCATTCATGCAGGTCGGCGCG
CTGCATTGGTGAGAAGTGGTGCTTGTCTAGCCGCAGCTTCCTATGCGATG
GCGTTGGGTGGTCTCTTGCGAGCGTAGCGGAATCAAGGGCACGCATTTTT
TTCTTCTGAAGTAGACATGCATGCCTGGCGTTGTGTTCGTTTTAAATAGG
CAGCCGTTTAAACGACAAGGAATGGTTGATCTCGGTCGCAGTGATTGTTG
AGGCAAGGCTGCTTCTGGTCGTGAAGTACTCCAAGCGTAACCCTCGAGGC
GGAAGCGCACTCGGTTGACCACCGTCTCCTCATTCACGCGTGGAAATTTG
CGTGAGTTATTCGCACCACGAGGTAAGTCTCGTGCGAAGTGTCGGTGGCT
TCAGCAAGGCATAGCATGGCCACTCACTACTGATGTTGCTCGAAGAAATC
GCCAGTGCTGCTCTAGTAAAATTGTATGGCGGGGTGCAAACGTAACTAAA
GGAGTAGTCAACATTGCGCTTGCCATACACGTGGTGCTGTTCCATTGTAG
TAGTAGACTCGACATTCGAGGGAATAATTGTGATGTTGATCGAGTGCCCC
CACCTCGTGCCAATCGTCGGACACGCTTGCTTGTGACGTGCATGCGTTAG
GCCACGCGTGCTTCCCTTACGCCGGGCGCCGGTAAACCGGGTGTTACTCG
CAGCTTCACCTGCAACAGCAGGCCATGCAAGCTTTGGAAGCGGTGGAGCA
CTCAACTCTCTTGGCGTGTAATTTGTCACGAACCGTACTCTGATGTAGAT
TGTGTTGACTTTCGAGAGCTTTCCTCTGGCTGCGTGAGGTGCGTGCTACA
CTCCGGCCAAACACAGTAGTATGTGTGATGTTCATCCTTTGTCCCCGTCT
TGGTGTTGTGACTCCTCTGTCAGGGGTCTCACAGACACTGCAGTTCGTTG
ATGTTCTGTTCGCCTGTTGTGTCGGGAGTGAATTTCCTTTTGGGAAAGTG
ACGGTTCATGGTGGTGCACGTGCAACCGCCGACTAGAGTTGGTTTCTGCC
ACGCTCGGAGGCCTGCATGTGCAGAGTGGTCCCATCCTTGAGCTTGTCAC
CACGTTTAATGTACTTTCCCCCCCTCATCATGTAACTTGCGCAAACGAGA
AGGCGAAAACCGCGCTGGAGAGAGCAGAGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10133:502..4032+

>mRNA_Ecto-sp13_S_contig10133.160.1 ID=mRNA_Ecto-sp13_S_contig10133.160.1|Name=mRNA_Ecto-sp13_S_contig10133.160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1032bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10133:502..4032+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAGGGCGGCGCGTACGTCCGCCTGGTAGAGGACGCCGGGCTATCTGC
CGCTGCCGCTGCCGATGCCGCCGCCGCTGCGGACGGGGATCGAAGCCTGC
AGACGAGGGTCGAGGCCATCGCTGCCCAAGAGGTTGCGCTTAAGTGGGGA
GAGGCTGAGGCCACGGGTGAGCACGGCGGAGGGGGCGCTGTGTCTAGGGA
GGCAGGAGTATTGGTGACTGTCGAGGAAGCCGAGGAGCTCATTGCCCGGG
AAGTAGAGATGTTCTCGTCGGGGGGCACGGGAATGCCGGACTACGCTTCC
CTTACCCCCGGAGCCAAAGTCGTTTACGGCCCTTTCCCCGTGGCGCCTGC
CTACAACGGTGAGGAACAGCAGGGCGTCGGCATGGTCGAGAACAAGGGGT
GGCTCACGTCCAAGACCCTGGCGAGCACTGAGCTGGAGTGGCACGACTAC
CTGCTGCACATGCTCAGGGTGCCCGGCCGGGTGTACGCCGAGGACGGCGA
CGCTGCGCTGTCGGCCTCCAACTCCCTCGGCTCCTGCTTCGCGTTCAAGG
GCGGAGAGGGGAGGCTGACCGTCGAGCTCGCTCGCCCACTTCCGCCGCCG
CCAGGAGATGAAAAGCCCGCTGCGGCGGCGGCGGCAGCCGGGTTCGTCAG
GGTCACCCACGTGTCCATCGAGCACGCGCGCGCCGCATCCGCTCCGACGG
CGGCGCAGAGCGCCCCCCGCGCCTTCAGGGTGCTGGGCTGGGACGCCGAC
CCCGCCAGCGCGGCGACGATCACGGCTTCTCTCGTCGGAGGTGGGGGCGA
CGGAGGGGGGGAGGCGCTGTTGCGGCCGCACGTGCTCCTGGCCGGCGCCG
AGTACCGGGTCGGGGAAGGGGCTCCGGGGGTGCAGACGTTCGCCGTGGCG
GAGGGGAGAGGGGAGGAGGCGGCGGCGGCGGTGCCCCCCGTTGGATGGGT
TACGCTTGAGGTGCAGAGCAACCACGGTGGGGCGTGGACCTGCCTCTACG
GCTTCCGCGTACACGGTGACCCGATCCATTGA
back to top