prot_Ecto-sp13_S_contig5577.15884.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig5577.15884.1
Unique Nameprot_Ecto-sp13_S_contig5577.15884.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length643
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5577.15884.1 vs. uniprot
Match: D7FMM1_ECTSI (Topo-VIb_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMM1_ECTSI)

HSP 1 Score: 1045 bits (2702), Expect = 0.000e+0
Identity = 547/606 (90.26%), Postives = 567/606 (93.56%), Query Frame = 0 
Query:    1 IKQTVKELVDNAIDSCRCRASEQDAPTVRVVLRRSAAGATIAEGVGEDLDLGEEPLELQVADNGAGLTDVAKALGLFSSTKSGHTPPVAPGVSSSGAAGKTAGKYGLGLTLSLLYSQKHFGGFLKATTATMDSAQWSFTKCDIDLETGTPRTVYRKSGLKPDSWAQGCGTDMRLMVPGDEEALDFAAPRLKAFFAHMHLLPDRPAGVSFACEGCLGNMSICVPRGGRDASPHLLLDNQDLVRAFAKGFSAMAKANRASIGTLQISPPPSATTVSLGGQSDGSPHSIDTLDRGTDQPQAQQYICQQRQSQSCIEGQREGSSIGSASEGIQRLEETDSSGGASSSSSSFAPSFPGHLDFAAEDVAVFECQGTNSSTWVMAAVAVERAPSTRNQGTYTQQADRGETTVPLFVHRFANSVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLQFILSEAPTPLKVNGGADWSALADIKAVHVVVTANSQTVPFTSLRKDAIAHKDGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLVASSVASMVNRSADANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 606
            I QTVKELVDNAIDSCRCR SEQDAPTVRVVLRR+AAGA +AEGVGEDLDL EEPLELQVADNGAGLTDV KALGLFSSTKSGHTPPVAP VSSSGAAGK AGKYGLGLTLSLLYSQKHFGGFLKATTATM+S QWSFTKCDIDLETGTPRTVYRKSGLKPDSWA+GCGTDMRL+VPGDEEALDFAAPRLKAFF  MHLLPDRPAGVSFACEGCL NMS+CVPRGGRDASPHLLLDNQDLV+AFAKG SAMAKAN+A IGTL+  P   ATT SLGGQS+GSPHS DTLDR TDQPQ Q ++ QQRQSQSC  GQREGSSIGSAS+GIQRLEE DSSG      SS APSFPGHLDFAAEDVAVFECQG NSSTWVMAAVAVERAP TR+QGT+TQQADRGETTVPLFVHRFAN VPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRL+F+LSEAPTPLKVNGGADWSALADIKAVHV VTANSQTVPFTSLRKDAIAHK+GYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPL ASSVASMV+RSA+ANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE
Sbjct:    5 ILQTVKELVDNAIDSCRCRTSEQDAPTVRVVLRRAAAGAAVAEGVGEDLDLEEEPLELQVADNGAGLTDVTKALGLFSSTKSGHTPPVAPDVSSSGAAGKNAGKYGLGLTLSLLYSQKHFGGFLKATTATMESTQWSFTKCDIDLETGTPRTVYRKSGLKPDSWARGCGTDMRLLVPGDEEALDFAAPRLKAFFTRMHLLPDRPAGVSFACEGCLDNMSVCVPRGGRDASPHLLLDNQDLVQAFAKGLSAMAKANKAPIGTLETPPXXXATTASLGGQSEGSPHSNDTLDRDTDQPQGQHHLQQQRQSQSCG-GQREGSSIGSASQGIQRLEEADSSGXXXXXXSSLAPSFPGHLDFAAEDVAVFECQGKNSSTWVMAAVAVERAPPTRDQGTFTQQADRGETTVPLFVHRFANGVPMLDTNTSAACALVAGVASKGSWRNLGLKISSARVRRREGRLRFVLSEAPTPLKVNGGADWSALADIKAVHVAVTANSQTVPFTSLRKDAIAHKEGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQEDLIPLAASSVASMVSRSANANFQKKCLQALGVGHEYVQERRLSDLLRFELQENIRQE 609
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BLAST of mRNA_Ecto-sp13_S_contig5577.15884.1 vs. uniprot
Match: A0A6H5JUR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR8_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.330e-46
Identity = 88/93 (94.62%), Postives = 90/93 (96.77%), Query Frame = 0 
Query:    1 IKQTVKELVDNAIDSCRCRASEQDAPTVRVVLRRSAAGATIAEGVGEDLDLGEEPLELQVADNGAGLTDVAKALGLFSSTKSGHTPPVAPGVS 93
            IKQTVKELVDNAIDSCRCRASEQDAPTVRVVLRRSAAGAT+AEGV EDLDL EEPLELQVADNGAGLTDV KA+GLFSSTKSGHTPPVAPGVS
Sbjct:   25 IKQTVKELVDNAIDSCRCRASEQDAPTVRVVLRRSAAGATVAEGVVEDLDLDEEPLELQVADNGAGLTDVTKAVGLFSSTKSGHTPPVAPGVS 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5577.15884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMM1_ECTSI0.000e+090.26Topo-VIb_trans domain-containing protein n=2 Tax=E... [more]
A0A6H5JUR8_9PHAE1.330e-4694.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 596..616
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 407..529
e-value: 7.6E-6
score: 25.8
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 376..608
e-value: 2.2E-11
score: 45.5
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 1..197
e-value: 5.8E-19
score: 70.5
IPR036890Histidine kinase/HSP90-like ATPase superfamilySUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 2..154

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5577contigEcto-sp13_S_contig5577:2..8866 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5577.15884.1mRNA_Ecto-sp13_S_contig5577.15884.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig5577 2..8866 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig5577.15884.1 ID=prot_Ecto-sp13_S_contig5577.15884.1|Name=mRNA_Ecto-sp13_S_contig5577.15884.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=643bp
IKQTVKELVDNAIDSCRCRASEQDAPTVRVVLRRSAAGATIAEGVGEDLD
LGEEPLELQVADNGAGLTDVAKALGLFSSTKSGHTPPVAPGVSSSGAAGK
TAGKYGLGLTLSLLYSQKHFGGFLKATTATMDSAQWSFTKCDIDLETGTP
RTVYRKSGLKPDSWAQGCGTDMRLMVPGDEEALDFAAPRLKAFFAHMHLL
PDRPAGVSFACEGCLGNMSICVPRGGRDASPHLLLDNQDLVRAFAKGFSA
MAKANRASIGTLQISPPPSATTVSLGGQSDGSPHSIDTLDRGTDQPQAQQ
YICQQRQSQSCIEGQREGSSIGSASEGIQRLEETDSSGGASSSSSSFAPS
FPGHLDFAAEDVAVFECQGTNSSTWVMAAVAVERAPSTRNQGTYTQQADR
GETTVPLFVHRFANSVPMLDTNTSAACALVAGVASKGSWRNLGLKISSAR
VRRREGRLQFILSEAPTPLKVNGGADWSALADIKAVHVVVTANSQTVPFT
SLRKDAIAHKDGYVSAAESAVRQGLLSLSNRESGGFRSAAEAAKDMMQED
LIPLVASSVASMVNRSADANFQKKCLQALGVGHEYVQERRLSDLLRFELQ
ENIRQEEERRVAATARAAARRAEEAGKKKKAKRVGKEKKRNNP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015320TopoVI_B_transducer
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR036890HATPase_C_sf