mRNA_Ecto-sp13_S_contig10130.158.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10130.158.1
Unique NamemRNA_Ecto-sp13_S_contig10130.158.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10130.158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10130contigEcto-sp13_S_contig10130:672..3219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462509.690448-CDS-Ecto-sp13_S_contig10130:671..7571681462509.690448-CDS-Ecto-sp13_S_contig10130:671..757Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10130 672..757 -
1681462509.7048512-CDS-Ecto-sp13_S_contig10130:3140..32191681462509.7048512-CDS-Ecto-sp13_S_contig10130:3140..3219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10130 3141..3219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10130.158.1prot_Ecto-sp13_S_contig10130.158.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10130 672..3219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10130.158.1

>prot_Ecto-sp13_S_contig10130.158.1 ID=prot_Ecto-sp13_S_contig10130.158.1|Name=mRNA_Ecto-sp13_S_contig10130.158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
CCCSWLWLESPRWVTLPKAPSYCCNLWWQDLVSYTDSCVPRTRGFGDDQQ
GQDP*
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mRNA from alignment at Ecto-sp13_S_contig10130:672..3219-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10130.158.1 ID=mRNA_Ecto-sp13_S_contig10130.158.1|Name=mRNA_Ecto-sp13_S_contig10130.158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2548bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10130:672..3219- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGCTGTTCCTGGCTTTGGCTGGAGAGTCCTCGATGGGTCACTCTCCC
AAAGGCACCATCATACTGCTGCAACTTATGTAAGTTTTCTCTGCCAAGGA
TTCTCTCTGTCTTTATCTGCTACTGACTGAAAACCTCCCACCTATCTCGC
GCTCTCGCGCTTCAAATCTTGTGAATTCTGAAACACTTCAACATGCGGTC
CGTTGGTTTGGGGTCAAAAGGTCAGGTTGTAGCCGTTAGAGGCGGGTGCT
ACCCCGCGACTCTTACAACCCTGCCTACAGTACAGTGGTGCCCACTCACC
TTCTCTCTCCCACCACGCAGTCTGCACGCAACACACAGAACACGAAGGCA
TGCCCACATGTCGGCTCTGGCTTTCGTGTGCTGTTCTGAAATAAGAGAGG
CGAGTTGAACGGCCACCTGCTGCACCGCCGCAATTTTGATTCAAAACCAA
CTTGACTGGTTGCTATTTTAATGTTTTGATAATCAGCTCACACCGGCTCA
GACTAAACTTCGAGCGCATGCTATCTTAGTTCTCACCAAGTGCCGGGCAT
ACTCGAATGTACAAGGCGGCCATGATGCATCACGTCCTGCTGGTGTGTTT
CATATTTTGTTGCTGGCGTGACGCTGCGGGCGGCGCGGTTTGGAAATATA
TGTGTTCGGAAGTTGAACCATTCGATCTCGCGGTGTAGTGTATTACCCCG
AAACGCTGAAAGATGGAGACGCGCAAGGCATCTCCTCCCGGGTGTGCTTA
AACAGAGAGAGAGGGATCAGATAAACGTCCTGGTTGTGTTTGTGCATGCA
AACTCGTAGGCATGCGCATCATGTACGTGTCGATAATTATTTATCATGTT
TTCGTCAGTCGTTCTTTGGTTTAAGTTGGCACGTTGGCTCCAGAGACGGT
TTGCTCTCTTCTTGGGTCGACAACACAATCTTGCTCGTGAATGCTTTGGT
GTGGGTGACTCCAAGAATGTAGCAGGCGAGCGTAATTTATATCGCAAGCA
CCCCGTGTGTCTTTTGGACTGAACGAACACTCGGGTGTTTACTAACTTAC
ACAGCATACAAACAAAGACACGATCGGGTTTCGAGTTATTTTTTTTGTGT
GTTCAGCACGCAGCAGGTCAGGTACGATTTGTTATCCGGTATATATGTCC
CTTTGCTCCCGAACCGCGGCGAAAGGACTAAACATTTTCGGGATCAAATG
TATAAGTGCTGCCTTCCAAACATCATCGGCATAAGCGTCAATATATTGAA
CAGGTGCTGTGATATTTTCCCTGTACCCATGGTTTTGAATAGGTCACGAC
CTGACCTGATCCATTACTTTCACCGATCAGCACAGGTCGTCGAGTTGATC
TGATCTGAACTTCCACGCGGACGGATACTTGCGTATATAGGGGTTGAGAG
GATGATGTAGAAGCTTAGTTAGCGTAGACTAACATCCCTCGAATACATGT
ATGTGGCCGTCGAAGGAGAGATGAGGTCGTCATCAAACGCCAAGCCGAGG
CTGCGCACAACATGGCGCATGCTGGTTTTACCCATCAATCCCTGAAGACG
CTGGAGACTTACCCGTTGATTTTCTTGTTTCAGAGCAATGCTCGCTGTTT
CCTTAATCTCTTTGGTGGACTTGCAAAAACGCGGGGGGGCGGTGACAATC
CGAAATCTACGCCGGAACTTACCGGAACCACACACTTTTCACAGCCGTGC
CCACCGCCACGGACCGCCACGGTCGTCAGCAGTAGCTAGTGGCATCAGCT
ACTTTTCAACCCGCATTTCAGGAGATTGGGGCCAGTGGCGGCGAGCGCAA
GCAGTACAACACGCAGGGTGTCGGTCAAATACCGGAGGTTTGCAGAGATT
GCAGGCGGCTACCACGACCCTCGACATCAGCGTACCCAAGAAGCAGATTT
GAGCGCGCCTACACCCCCCCCCCCCGCTGCTATATGGTATCCCCTAGTGA
TTTCCATAGAATGCATAGAGCCTACAAATAGCGCAAACCCGACCTTGTCT
GAGCGTCTTCCGATCGATTTGACTCTTTAGACTTGAATGTAAAGAGTAGT
GGGGCATTTATTATCTTGATTTCGAAGGAGTCGTTCGGAGGTAGAAGTGA
AGTGTACATGTTTAGAGCAGCCTCTACTGCTGCTGTGCGAAAATCAACAA
TTTCTGTTTTTCGCGTTGCCTTCCGACTGGCCTTGTGATTGTCTTTGTGC
ATTTTTTTGTGCTCGTGCGTTCGTTTTCAAAATTGGTTAACATCAAAACT
CCATATCTTGCAACCCTTGTCATCCCGTGACAATAGTCCCCTATAACTTG
AGCCTCCTTCAATATCCTGCCACTCTCCCAAGAATTACCGTTCAGATTCT
GTGCTCAAATCCCGCAACAACATGCACAGCCTTTAGACCCTCTCCTCTAA
AATTGATCGTCACCACGTACAGCTAACACCATGGACTACTGCTTCTGTTG
ACTCGTGATTAGGGTGGCAAGACTTGGTTTCCTACACCGACTCCTGCGTT
CCGCGAACTCGGGGCTTCGGCGATGATCAGCAAGGGCAAGACCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10130:672..3219-

>mRNA_Ecto-sp13_S_contig10130.158.1 ID=mRNA_Ecto-sp13_S_contig10130.158.1|Name=mRNA_Ecto-sp13_S_contig10130.158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10130:672..3219- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTGCTGTTCCTGGCTTTGGCTGGAGAGTCCTCGATGGGTCACTCTCCC
AAAGGCACCATCATACTGCTGCAACTTATGGTGGCAAGACTTGGTTTCCT
ACACCGACTCCTGCGTTCCGCGAACTCGGGGCTTCGGCGATGATCAGCAA
GGGCAAGACCCGTGA
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