prot_Ecto-sp13_S_contig10126.155.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10126.155.1
Unique Nameprot_Ecto-sp13_S_contig10126.155.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length556
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10126.155.1 vs. uniprot
Match: A0A6H5JFE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE0_9PHAE)

HSP 1 Score: 493 bits (1268), Expect = 3.820e-162
Identity = 437/522 (83.72%), Postives = 439/522 (84.10%), Query Frame = 0 
Query:   62 CRRERLFTDDPNSNTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGSTGXXXXXXXAVAGGPSRLLPPGGAGHLTGLGLGGGGVRSPPVSPSLHQRMGLGDDMGLLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------LVTPPVTAFLPPTPPVRGGYDSHGFGGLAIAHPETSGFSGGSSFRVGAPGISSTSGFVDAPVNARAPMARVGXXXXXXXXXXXXXXXXXXXIGGRAASSSHHRASSLGLHPSSASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVGATGVGSGVGGINVSTGGGIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNLSHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA 556
            CRRERLF DDPN+NTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGS  XXXXXXX    GPSRLLPPGGAGHL GLGL     RSPPVSPSLHQRMGLGDDM LLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                           LV PPVTAFLPPTPPVRGGYDSHGFGGL IAHPETSGFSGGSSFRVGAPGISS SGFVDAPVN RAPMA VG        XXXXXXXXXXX         HHRASSLGLHPSSASSS          XXXXXXXXXXXXXXXXXXXXX T GATGVG GVGGINVS GG     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNL+HVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA
Sbjct:  159 CRRERLFADDPNTNTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGSXXXXXXXXXXXXXGPSRLLPPGGAGHLAGLGLXXXXGRSPPVSPSLHQRMGLGDDMVLLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVNPPVTAFLPPTPPVRGGYDSHGFGGLTIAHPETSGFSGGSSFRVGAPGISSASGFVDAPVNVRAPMATVGGGVGGKGSXXXXXXXXXXXXXXXXXXXXHHRASSLGLHPSSASSSSPGLTPSSWSXXXXXXXXXXXXXXXXXXXXXXTAGATGVGGGVGGINVSAGG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNLAHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA 678
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10126.155.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JFE0_9PHAE3.820e-16283.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 202..232
NoneNo IPR availablePANTHERPTHR13270PROTEIN C20ORF116-RELATEDcoord: 199..473

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10126contigEcto-sp13_S_contig10126:1514..4251 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10126.155.1mRNA_Ecto-sp13_S_contig10126.155.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10126 1508..4251 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10126.155.1 ID=prot_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=556bp
MYCSGHREGDMVDVVYKRCEYPGGCEKHPHFGAEGERARFCGRHKTDDMV
NVKHRRCQQPGCRRERLFTDDPNSNTKPLYCSLHLAYQERGIDPRSCDLD
LPPGLVPLPSIGGRSRSGSTGSGGVGAGAVAGGPSRLLPPGGAGHLTGLG
LGGGGVRSPPVSPSLHQRMGLGDDMGLLSTAGKKRGRLGFGEDDVGGGGG
GSEASDQRLQQAKQQQQQQQQQQQQMHQLQQRRLYEAQQQQQQQQQHRQA
GGGSGGGSSGGGGGAGLVTPPVTAFLPPTPPVRGGYDSHGFGGLAIAHPE
TSGFSGGSSFRVGAPGISSTSGFVDAPVNARAPMARVGVGVGGKGSAAGA
GAGGGGGIGGRAASSSHHRASSLGLHPSSASSSSPGLTPSSWSSWPSSSS
SGGREAIPSSSSSSGTVGATGVGSGVGGINVSTGGGIASSSRAGSVAAAD
GDGGVAAAAAAAAVAAAAAAGGIGDGTNLEMKPPPTEPSVHGPLHQYSGR
SGHGPASNLSHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSA
AANVLA
back to top