Homology
BLAST of mRNA_Ecto-sp13_S_contig10126.155.1 vs. uniprot
Match: A0A6H5JFE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE0_9PHAE) HSP 1 Score: 493 bits (1268), Expect = 4.100e-162 Identity = 437/522 (83.72%), Postives = 439/522 (84.10%), Query Frame = 1 Query: 190 CRRERLFTDDPNSNTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGSTGXXXXXXXAVAGGPSRLLPPGGAGHLTGLGLGGGGVRSPPVSPSLHQRMGLGDDMGLLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------------------LVTPPVTAFLPPTPPVRGGYDSHGFGGLAIAHPETSGFSGGSSFRVGAPGISSTSGFVDAPVNARAPMARVGXXXXXXXXXXXXXXXXXXXIGGRAASSSHHRASSLGLHPSSASSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTVGATGVGSGVGGINVSTGGGIASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNLSHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA 1674
CRRERLF DDPN+NTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGS XXXXXXX GPSRLLPPGGAGHL GLGL RSPPVSPSLHQRMGLGDDM LLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LV PPVTAFLPPTPPVRGGYDSHGFGGL IAHPETSGFSGGSSFRVGAPGISS SGFVDAPVN RAPMA VG XXXXXXXXXXX HHRASSLGLHPSSASSS XXXXXXXXXXXXXXXXXXXXX T GATGVG GVGGINVS GG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNL+HVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA
Sbjct: 159 CRRERLFADDPNTNTKPLYCSLHLAYQERGIDPRSCDLDLPPGLVPLPSIGGRSRSGSXXXXXXXXXXXXXGPSRLLPPGGAGHLAGLGLXXXXGRSPPVSPSLHQRMGLGDDMVLLSTAGKKRGRLGFGEDDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGLVNPPVTAFLPPTPPVRGGYDSHGFGGLTIAHPETSGFSGGSSFRVGAPGISSASGFVDAPVNVRAPMATVGGGVGGKGSXXXXXXXXXXXXXXXXXXXXHHRASSLGLHPSSASSSSPGLTPSSWSXXXXXXXXXXXXXXXXXXXXXXTAGATGVGGGVGGINVSAGG--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGIGDGTNLEMKPPPTEPSVHGPLHQYSGRSGHGPASNLAHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLA 678
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 1676 |
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-18_000940.1 |
| Cds size | 1668 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462509.517277-UTR-Ecto-sp13_S_contig10126:1507..1513 | 1681462509.517277-UTR-Ecto-sp13_S_contig10126:1507..1513 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10126 1508..1513 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462509.5277486-CDS-Ecto-sp13_S_contig10126:1513..1594 | 1681462509.5277486-CDS-Ecto-sp13_S_contig10126:1513..1594 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10126 1514..1594 + |
| 1681462509.5374784-CDS-Ecto-sp13_S_contig10126:2664..4251 | 1681462509.5374784-CDS-Ecto-sp13_S_contig10126:2664..4251 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10126 2665..4251 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10126.155.1 >prot_Ecto-sp13_S_contig10126.155.1 ID=prot_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=556bp
MYCSGHREGDMVDVVYKRCEYPGGCEKHPHFGAEGERARFCGRHKTDDMV
NVKHRRCQQPGCRRERLFTDDPNSNTKPLYCSLHLAYQERGIDPRSCDLD
LPPGLVPLPSIGGRSRSGSTGSGGVGAGAVAGGPSRLLPPGGAGHLTGLG
LGGGGVRSPPVSPSLHQRMGLGDDMGLLSTAGKKRGRLGFGEDDVGGGGG
GSEASDQRLQQAKQQQQQQQQQQQQMHQLQQRRLYEAQQQQQQQQQHRQA
GGGSGGGSSGGGGGAGLVTPPVTAFLPPTPPVRGGYDSHGFGGLAIAHPE
TSGFSGGSSFRVGAPGISSTSGFVDAPVNARAPMARVGVGVGGKGSAAGA
GAGGGGGIGGRAASSSHHRASSLGLHPSSASSSSPGLTPSSWSSWPSSSS
SGGREAIPSSSSSSGTVGATGVGSGVGGINVSTGGGIASSSRAGSVAAAD
GDGGVAAAAAAAAVAAAAAAGGIGDGTNLEMKPPPTEPSVHGPLHQYSGR
SGHGPASNLSHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSA
AANVLA back to topmRNA from alignment at Ecto-sp13_S_contig10126:1508..4251+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10126.155.1 ID=mRNA_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2744bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10126:1508..4251+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCAATGTACTGCTCAGGCCATCGGGAGGGTGACATGGTGGACGTGGT
GTACAAGCGATGCGAGTATCCCGGAGGCTGCGAAAAGGTGAGACAGACAG
CGGCAGAGAGGGAGAGAGAGAAACAGACAGACAGCGGCAGAGAGGGAGAG
AGAGAAACAGACAAACAGCGGCAGAGAGGGAGAGAAGAAACAGACAGACA
GACAGACAGACGGAGACCCGGTACCCTGTCTCTGCCCCGTTGGTCAAGAA
TTACAAGAGTTACAAGAGTTAAGACGGTTTCGGTGGTATGTTGCACGACA
GCGGGCAGGCGTGACCATGTTTGTCCGTTGTAGGGTATTTCGTTATTTTT
CCTGGCGTATCTTCGCTTCTCTATCCTTGTCTATCTCTACTCTTCGGGGA
CGCTGAGCGTCGTTGACCGTGGCACCGCATGTTGAGTGGGCAGCAGCACA
CAGGGCAGGCGGCCGCCAAGGACGGGCACATGTTTCCCTCGGCCGTTGCC
GCCGCTGCTGATTGGGAGTCGAAGCGAAAATCTGGCGCGTGGAATATCGT
AGCACCACCGCCGTCGCACCAGTAGCGTCGGCGATCAAACACACCTGGTG
CTATGACGTAACCTTTTGTCGCCCTCATTGAACCTTGTTGGCAATGGGGC
GGTCCGTTATTATTCCTGTTATGATGCAGCGTCACTCCGACACTAAGTGT
ACTTCATCGGGAACAGCATGCATCGAATCCCGAAAGTCTTGTCGTGTTTC
TACCGAGGTGTACTTTTCCAGTCACAACTGATGTACCGGTGTGAAACACG
CGCGGAGAATGCCATCGCGAGTGGTCTGGTTATTTCTCTGCAGTTGGCAC
CACCCTAAACCTTGTAGAGACCACGCCAATCGACCTTTTCGTCTATGCCG
ACCCCCCCTCCCTCCCTCCCTCCCTCTCTTCGACCCAACCCTGCCCGCGT
GCTTGTCTTCGGAGACTGCTCGACTAACGATTCCCCTCCTTGGTCTTTCC
TCTCTCCGTTACCGTTGCACTCTTAAAACTTTCGCTGCTGGTACGCCAAC
CCCACCCACCAATCGATTAATCGACGGATGAATCCTGTTGGAAAAAAAAA
AAAACGCCGGTGTCGGCAACGAACAAATCGATCGTGATTGATTTTCCCGC
CGCGCAGCATCCGCACTTCGGCGCCGAAGGCGAGAGGGCGCGTTTCTGCG
GCCGGCACAAGACGGACGACATGGTCAACGTCAAGCACCGCCGCTGCCAG
CAGCCGGGGTGCCGGCGGGAGCGCCTCTTCACCGACGACCCCAACTCGAA
CACGAAGCCTCTCTATTGCTCGCTGCACCTCGCTTACCAGGAGCGTGGCA
TCGACCCCCGCTCCTGCGACTTAGACCTGCCCCCCGGCCTCGTACCTCTG
CCCTCGATAGGCGGGCGCAGTAGGTCGGGGAGCACGGGTAGTGGGGGCGT
CGGGGCGGGCGCGGTGGCGGGGGGACCCTCCCGCCTGCTGCCGCCTGGCG
GTGCGGGACACTTGACGGGGCTTGGCCTCGGAGGGGGGGGGGTGCGTAGC
CCTCCGGTTTCTCCGTCGCTGCACCAGCGGATGGGCCTGGGCGATGACAT
GGGGTTGTTGAGCACGGCTGGCAAGAAGCGGGGGCGCTTGGGGTTTGGCG
AGGATGATGTTGGCGGCGGGGGTGGAGGGTCGGAGGCTTCTGACCAGCGC
TTGCAGCAAGCAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
GATGCACCAGCTACAGCAACGCCGGCTGTACGAAGCGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCACCGTCAGGCCGGGGGCGGGAGCGGGGGCGGCAGC
AGCGGCGGCGGCGGCGGTGCAGGACTGGTCACCCCACCCGTGACGGCGTT
TCTTCCACCAACGCCGCCGGTCCGAGGGGGTTACGATTCCCACGGGTTCG
GGGGGCTGGCCATTGCACACCCTGAGACGAGCGGGTTTTCCGGAGGGTCT
AGCTTTCGAGTTGGGGCTCCGGGCATTTCCAGTACGTCAGGATTCGTGGA
CGCGCCCGTGAACGCTCGGGCGCCGATGGCGAGGGTGGGTGTGGGCGTGG
GCGGCAAGGGTTCGGCGGCGGGGGCGGGGGCTGGCGGGGGCGGAGGCATT
GGCGGTAGGGCGGCTTCGTCGTCTCATCACCGCGCGTCGTCGCTAGGGTT
ACACCCGTCGTCGGCCTCGTCTTCGTCGCCCGGGTTAACCCCCTCGTCTT
GGTCATCATGGCCGTCCTCTTCGTCGAGCGGCGGCCGCGAGGCGATACCC
TCCTCGTCCTCCTCGAGCGGGACGGTGGGGGCCACCGGCGTCGGCAGTGG
CGTCGGCGGCATCAACGTCTCGACCGGGGGAGGCATCGCGAGCTCCTCTC
GCGCGGGCTCCGTCGCCGCCGCCGACGGTGATGGCGGGGTGGCCGCCGCC
GCCGCAGCAGCAGCAGTAGCAGCAGCCGCTGCCGCCGGTGGCATTGGCGA
CGGAACCAACCTCGAGATGAAGCCTCCACCGACGGAGCCGTCGGTGCACG
GCCCCCTGCACCAGTACAGCGGCCGGAGCGGGCACGGCCCGGCCTCGAAC
CTCTCGCACGTGCGGCTACCGGGGCTCCCGGGCCTGGCCTGGTCGTCGCC
GTCGCCTCTGTCGCCGCCGGTGCTGCCCCACCCTCCCCTGCTCCCCGGCA
TCTCAAACTTCAGACGCCTGTCGGCGGCGGCGAACGTGCTCGCG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10126:1508..4251+ >mRNA_Ecto-sp13_S_contig10126.155.1 ID=mRNA_Ecto-sp13_S_contig10126.155.1|Name=mRNA_Ecto-sp13_S_contig10126.155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10126:1508..4251+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACTGCTCAGGCCATCGGGAGGGTGACATGGTGGACGTGGTGTACAA
GCGATGCGAGTATCCCGGAGGCTGCGAAAAGCATCCGCACTTCGGCGCCG
AAGGCGAGAGGGCGCGTTTCTGCGGCCGGCACAAGACGGACGACATGGTC
AACGTCAAGCACCGCCGCTGCCAGCAGCCGGGGTGCCGGCGGGAGCGCCT
CTTCACCGACGACCCCAACTCGAACACGAAGCCTCTCTATTGCTCGCTGC
ACCTCGCTTACCAGGAGCGTGGCATCGACCCCCGCTCCTGCGACTTAGAC
CTGCCCCCCGGCCTCGTACCTCTGCCCTCGATAGGCGGGCGCAGTAGGTC
GGGGAGCACGGGTAGTGGGGGCGTCGGGGCGGGCGCGGTGGCGGGGGGAC
CCTCCCGCCTGCTGCCGCCTGGCGGTGCGGGACACTTGACGGGGCTTGGC
CTCGGAGGGGGGGGGGTGCGTAGCCCTCCGGTTTCTCCGTCGCTGCACCA
GCGGATGGGCCTGGGCGATGACATGGGGTTGTTGAGCACGGCTGGCAAGA
AGCGGGGGCGCTTGGGGTTTGGCGAGGATGATGTTGGCGGCGGGGGTGGA
GGGTCGGAGGCTTCTGACCAGCGCTTGCAGCAAGCAAAGCAGCAGCAGCA
GCAGCAGCAGCAGCAACAGCAACAGATGCACCAGCTACAGCAACGCCGGC
TGTACGAAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCGTCAGGCC
GGGGGCGGGAGCGGGGGCGGCAGCAGCGGCGGCGGCGGCGGTGCAGGACT
GGTCACCCCACCCGTGACGGCGTTTCTTCCACCAACGCCGCCGGTCCGAG
GGGGTTACGATTCCCACGGGTTCGGGGGGCTGGCCATTGCACACCCTGAG
ACGAGCGGGTTTTCCGGAGGGTCTAGCTTTCGAGTTGGGGCTCCGGGCAT
TTCCAGTACGTCAGGATTCGTGGACGCGCCCGTGAACGCTCGGGCGCCGA
TGGCGAGGGTGGGTGTGGGCGTGGGCGGCAAGGGTTCGGCGGCGGGGGCG
GGGGCTGGCGGGGGCGGAGGCATTGGCGGTAGGGCGGCTTCGTCGTCTCA
TCACCGCGCGTCGTCGCTAGGGTTACACCCGTCGTCGGCCTCGTCTTCGT
CGCCCGGGTTAACCCCCTCGTCTTGGTCATCATGGCCGTCCTCTTCGTCG
AGCGGCGGCCGCGAGGCGATACCCTCCTCGTCCTCCTCGAGCGGGACGGT
GGGGGCCACCGGCGTCGGCAGTGGCGTCGGCGGCATCAACGTCTCGACCG
GGGGAGGCATCGCGAGCTCCTCTCGCGCGGGCTCCGTCGCCGCCGCCGAC
GGTGATGGCGGGGTGGCCGCCGCCGCCGCAGCAGCAGCAGTAGCAGCAGC
CGCTGCCGCCGGTGGCATTGGCGACGGAACCAACCTCGAGATGAAGCCTC
CACCGACGGAGCCGTCGGTGCACGGCCCCCTGCACCAGTACAGCGGCCGG
AGCGGGCACGGCCCGGCCTCGAACCTCTCGCACGTGCGGCTACCGGGGCT
CCCGGGCCTGGCCTGGTCGTCGCCGTCGCCTCTGTCGCCGCCGGTGCTGC
CCCACCCTCCCCTGCTCCCCGGCATCTCAAACTTCAGACGCCTGTCGGCG
GCGGCGAACGTGCTCGCG back to top
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