mRNA_Ecto-sp13_S_contig10125.153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10125.153.1
Unique NamemRNA_Ecto-sp13_S_contig10125.153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: D8LR26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR26_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 2.080e-61
Identity = 118/123 (95.93%), Postives = 123/123 (100.00%), Query Frame = 1
Query:   28 GVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTSTCRAGYFCKTGVGNPTPN 396
            GVTGYPCPRGTYCPAGSSFP+GCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLV+ESECSPCPPG+YCLDG+VTSTCRAGYFCKTG+GNPTPN
Sbjct: 2951 GVTGYPCPRGTYCPAGSSFPHGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVAESECSPCPPGHYCLDGNVTSTCRAGYFCKTGIGNPTPN 3073          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: T0S7D3_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S7D3_SAPDV)

HSP 1 Score: 88.2 bits (217), Expect = 1.230e-17
Identity = 65/125 (52.00%), Postives = 79/125 (63.20%), Query Frame = 1
Query:   28 GVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTG--VGNP 387
            GVTG+ CP G YCP GS+FP GCAPGTY+P     +C+ C  G  CP NT+ P  XXXXXXXXXXXXXXXXXXX    +  +L S S+C+ C PG +C    +T     C +GY C  G  + NP
Sbjct:  178 GVTGFACPPGNYCPMGSAFPVGCAPGTYSPLLGAGSCLGCPTGFFCPQNTSVPIXXXXXXXXXXXXXXXXXXXXATYSNVVNLTSSSQCALCSPGAFCNATGLTQPTGLCASGYVCTGGSPIANP 302          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A6A4ZXM6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4ZXM6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.240e-17
Identity = 65/124 (52.42%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   31 VTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTGVGNPTP 393
            VTGY CP G +C  GSSFP GCAPG+Y+P     AC+DC  G  CP NT+ P  XXXXXXXXXXXXXXXXXXXX   +   L + S+C  C PG YC    + +    C  GY C  G   P P
Sbjct: 2277 VTGYACPAGMFCVRGSSFPIGCAPGSYSPFPGAAACLDCPIGAYCPQNTSVPVPXXXXXXXXXXXXXXXXXXXXTYSNNTMLTTTSQCMACSPGSYCNASGLVAPSGPCLPGYVCVGGAPIPNP 2400          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A7M7NCN3_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7NCN3_STRPU)

HSP 1 Score: 85.9 bits (211), Expect = 7.960e-17
Identity = 54/138 (39.13%), Postives = 72/138 (52.17%), Query Frame = 1
Query:    4 AESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTGVGNPTPNRCAR 408
            A S+ P DG TG  CP G YCPAGSS P  C PGTY  +   EAC+ C PG  C   +   + XXXXXXXXX                  L +E++C+ C  G+YC   + T+    C AG++C++G     P+  +R
Sbjct: 4374 ATSASPTDGDTGDECPVGHYCPAGSSQPIQCEPGTYTDTTQNEACLQCTPGHYCITGSNPEDXXXXXXXXXXTGHVWQSCPIGTFSSSTGLANETQCTQCTAGHYCDMVNATTVAGDCDAGFYCRSGSDARQPSESSR 4511          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI001FEDF4A2 (zonadhesin n=1 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI001FEDF4A2)

HSP 1 Score: 85.1 bits (209), Expect = 1.460e-16
Identity = 56/135 (41.48%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTT-PEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCL---DGDVTSTCRAGYFCKTGVGNPTP 393
            G+ S++PVDG+ GY CP G      +S    C PGTY+ +     C+ C  G +CP + T  P  XXXXXXXXXXX                  SESEC PCPPG+YC           C+AGYFC++G  +P P
Sbjct: 1835 GSRSARPVDGLEGYICPIGXXXXXXTSVEMPCEPGTYSSAPGAAHCLSCPSGSMCPSSATKDPTSXXXXXXXXXXXALALPCPIGTLGQVTRAQSESECVPCPPGFYCSVPGTSQPQGQCQAGYFCQSGSSDPAP 1969          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI001455CDB0 (multiple epidermal growth factor-like domains protein 6 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455CDB0)

HSP 1 Score: 83.2 bits (204), Expect = 6.710e-16
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    4 AESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTST---CRAGYFCKTGVGNPTPNRCAR 408
            A  + PVDG+TG  CP G +CPAG+S P  C PGTY  +E    C  C PG  C   T   + XXXXXXXXX              ++  L +E++C+ C  G+YC   + TS    C AG++C+ G  + TP+  +R
Sbjct: 1308 ASVAAPVDGITGDICPIGFHCPAGTSSPVPCDPGTYTDTEQNALCDLCTPGHYCTMGTNPQDXXXXXXXXXXTGHVWQSCPLGTFSNQTGLSNETQCTQCTFGFYCDQLNATSESGLCAAGHYCRLGSDSRTPSVLSR 1445          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI00148A378A (uncharacterized protein LOC105348209 isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A378A)

HSP 1 Score: 78.6 bits (192), Expect = 2.890e-14
Identity = 51/139 (36.69%), Postives = 65/139 (46.76%), Query Frame = 1
Query:    1 GAES-SQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTT----PEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDV---TSTCRAGYFCKTGVGNPTP 393
            GA+S + PV   TG PCP G+YCP G+S+P GC  GTYNPS  +  C+        P N+TT       XXXXX                  D     S ++C PC PG YC    +   T  C AG++C  G  +  P
Sbjct: 3380 GAQSPNNPVVDSTGGPCPIGSYCPNGTSYPLGCPAGTYNPSTGLAECIQXXXXXXXPENSTTYTGNDXXXXXXXLAGTGSMNQYPCSIGTYNDYTGKQSSADCVPCEPGKYCATPGLSLPTGDCTAGWYCVRGAWSDQP 3518          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A3M0IUE0_HIRRU (Uncharacterized protein n=1 Tax=Hirundo rustica rustica TaxID=333673 RepID=A0A3M0IUE0_HIRRU)

HSP 1 Score: 77.4 bits (189), Expect = 7.040e-14
Identity = 52/131 (39.69%), Postives = 61/131 (46.56%), Query Frame = 1
Query:    1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDVTSTCRAGYFCKTGVGNPTP 393
            G  S  P DG+ GY CP G+YCPAGS     C PGT++P      C+            T        XX X    XXXXXXX    +   L +E EC PC PG+YC  G +   C AGYFC  G     P
Sbjct:  777 GNSSPCPSDGIHGYRCPSGSYCPAGSGLELPCEPGTFSPVPGASTCLXXXXXXXXXSAGTV---QPLAXXRXTRVPXXXXXXXFTPENVTGLWNEKECLPCLPGHYCRHGKLEGKCAAGYFCLAGSSQAAP 904          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: UPI001B7E219B (SCO-spondin n=1 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7E219B)

HSP 1 Score: 77.4 bits (189), Expect = 7.250e-14
Identity = 54/147 (36.73%), Postives = 64/147 (43.54%), Query Frame = 1
Query:    1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKICPGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYCLDGDV---TSTCRAGYFC-------------KTGVGNPTP 393
            GAE+S PVDGV+G  CP+G YCP GS  P  C  G+Y        C+DC  G  C    +    XXXXXXX                         +C  CP G YC D  +   T +C+AGYFC              TGVG P P
Sbjct:  651 GAETSMPVDGVSGDRCPKGLYCPKGSVLPLPCPDGSYTNITGAAECLDCPAGYYCLSGQSVQLXXXXXXXXGGTGLDRLPCPPGTYSPEPGNSQLEQCLLCPAGMYCEDWGLSVPTGSCQAGYFCLAGMNFRNPDGNISTGVGGPCP 797          
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Match: A0A8K1GBP5_9PASS (Uncharacterized protein (Fragment) n=1 Tax=Zosterops borbonicus TaxID=364589 RepID=A0A8K1GBP5_9PASS)

HSP 1 Score: 76.3 bits (186), Expect = 1.830e-13
Identity = 65/135 (48.15%), Postives = 75/135 (55.56%), Query Frame = 1
Query:    1 GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCLPGKIC-PGNTTTPEEXXXXXXXXXXXXXXXXXXXXXXXDRNDLVSESECSPCPPGYYC---LDGDVTSTCRAGYFCKTGVGNPTP 393
            G  S  P DG+ GYPCP G+YCP GS     C PGT++P      C+ C  G  C    T  P  XXXXXXXXXXXXXXXXXXXXXXX     V+ + C  CP G YC    + +    C  GYFC  G  + TP
Sbjct: 2552 GNSSPCPSDGIHGYPCPSGSYCPQGSGLELPCEPGTFSPLPGASTCLPCPAGTSCGSAGTVQPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPTACRQCPVGRYCRGEANWEPDGLCSPGYFCDRGATDATP 2686          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10125.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR26_ECTSI2.080e-6195.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
T0S7D3_SAPDV1.230e-1752.00Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A6A4ZXM6_9STRA1.240e-1752.42Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7M7NCN3_STRPU7.960e-1739.13Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001FEDF4A21.460e-1641.48zonadhesin n=1 Tax=Tachysurus fulvidraco TaxID=123... [more]
UPI001455CDB06.710e-1639.13multiple epidermal growth factor-like domains prot... [more]
UPI00148A378A2.890e-1436.69uncharacterized protein LOC105348209 isoform X1 n=... [more]
A0A3M0IUE0_HIRRU7.040e-1439.69Uncharacterized protein n=1 Tax=Hirundo rustica ru... [more]
UPI001B7E219B7.250e-1436.73SCO-spondin n=1 Tax=Polyodon spathula TaxID=7913 R... [more]
A0A8K1GBP5_9PASS1.830e-1348.15Uncharacterized protein (Fragment) n=1 Tax=Zostero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10125contigEcto-sp13_S_contig10125:411..1290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score212.2
Seed ortholog evalue1.5e-52
Seed eggNOG ortholog2880.D8LR26
Model size408
KEGG koko:K16726,ko:K17751
KEGG Pathwayko04260,ko04261,ko05416,map04260,map04261,map05416
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0161@2759,KOG1217@1,KOG1217@2759,KOG3529@1,KOG3529@2759
Cds size408
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462509.3751647-CDS-Ecto-sp13_S_contig10125:410..6771681462509.3751647-CDS-Ecto-sp13_S_contig10125:410..677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10125 411..677 +
1681462509.3859198-CDS-Ecto-sp13_S_contig10125:1149..12901681462509.3859198-CDS-Ecto-sp13_S_contig10125:1149..1290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10125 1150..1290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10125.153.1prot_Ecto-sp13_S_contig10125.153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10125 411..1290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10125.153.1

>prot_Ecto-sp13_S_contig10125.153.1 ID=prot_Ecto-sp13_S_contig10125.153.1|Name=mRNA_Ecto-sp13_S_contig10125.153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
GAESSQPVDGVTGYPCPRGTYCPAGSSFPYGCAPGTYNPSEAMEACVDCL
PGKICPGNTTTPEECPEYHYCPAGSATGIICPTGTYSDRNDLVSESECSP
CPPGYYCLDGDVTSTCRAGYFCKTGVGNPTPNRCAR
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mRNA from alignment at Ecto-sp13_S_contig10125:411..1290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10125.153.1 ID=mRNA_Ecto-sp13_S_contig10125.153.1|Name=mRNA_Ecto-sp13_S_contig10125.153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=880bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10125:411..1290+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCCGAATCTTCGCAACCGGTAGATGGAGTAACGGGCTACCCGTGTCC TCGAGGCACGTACTGCCCGGCTGGGTCCTCGTTCCCGTACGGGTGCGCCC CGGGGACGTACAACCCTTCTGAGGCGATGGAGGCATGCGTCGACTGCTTG CCGGGCAAGATTTGCCCCGGAAACACGACCACGCCCGAGGAGTGTCCGGA ATACCACTACTGTCCAGCCGGTTCGGCGACCGGGATTATTTGTCCGACCG GCACGTACAGCGACAGGGTGAGGGAAAGAACAGGTCCTCAGAGCATCGAA AAAGCTCAAGGTTATGGTAACAGGCTTGCATGCGTGTGAGATTGCACACC AGCATGATTTGCAAAAATATTGAAATGTGGTCCAGTACCGCCGAGAATCT CGAATGACCGACGTGACCCGATGGCCGGTGTGCGGTGCAGTGCAGCCGGT AGACTGTTTAACGTTTACGGTAGGAGTTTACTCTATGAAAATGAAGAACA CGATGTCGATCAGGATCTGTTGCCTGAGCTTCATGCTCGGCCGTGCATCC ACTCAGCAGCTAATGGTGAAGATGGGAATCCGGCTGATAAGCAGATATCG AAACTTCCAGCACCGTTCGTATTTGGGCGTGATCGATGGTGTGACGGGAC AGATCTAACCACCTGCCTTTGCCCCACTTGTCCTAACCCGCACCTTCTTG GATCGGTGCTTGGCCGGCGTGGTGCACGTGACCCCCTAGAATGACCTCGT GTCAGAGAGCGAGTGTTCGCCGTGTCCGCCGGGATACTATTGCCTCGATG GCGACGTCACGTCCACATGCAGAGCGGGATACTTCTGCAAGACCGGAGTC GGCAACCCAACGCCGAATAGGTGCGCCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10125:411..1290+

>mRNA_Ecto-sp13_S_contig10125.153.1 ID=mRNA_Ecto-sp13_S_contig10125.153.1|Name=mRNA_Ecto-sp13_S_contig10125.153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10125:411..1290+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCCGAATCTTCGCAACCGGTAGATGGAGTAACGGGCTACCCGTGTCC
TCGAGGCACGTACTGCCCGGCTGGGTCCTCGTTCCCGTACGGGTGCGCCC
CGGGGACGTACAACCCTTCTGAGGCGATGGAGGCATGCGTCGACTGCTTG
CCGGGCAAGATTTGCCCCGGAAACACGACCACGCCCGAGGAGTGTCCGGA
ATACCACTACTGTCCAGCCGGTTCGGCGACCGGGATTATTTGTCCGACCG
GCACGTACAGCGACAGGAATGACCTCGTGTCAGAGAGCGAGTGTTCGCCG
TGTCCGCCGGGATACTATTGCCTCGATGGCGACGTCACGTCCACATGCAG
AGCGGGATACTTCTGCAAGACCGGAGTCGGCAACCCAACGCCGAATAGGT
GCGCCAGA
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