mRNA_Ecto-sp13_S_contig11762.1514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11762.1514.1
Unique NamemRNA_Ecto-sp13_S_contig11762.1514.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11762.1514.1 vs. uniprot
Match: D7FUD9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 1.220e-44
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 2 
Query:    2 LAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRERNSKAQAQADTLLQQQDVFEAALARNDATHEARLRRLKQEAG 286
            LAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRERNSKAQAQADTLLQQQDVFEAALA+NDATHEARLRRLKQEAG
Sbjct: 1163 LAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRERNSKAQAQADTLLQQQDVFEAALAQNDATHEARLRRLKQEAG 1257
[Close]
BLAST of mRNA_Ecto-sp13_S_contig11762.1514.1 vs. uniprot
Match: A0A6H5KVQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVQ6_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 9.740e-41
Identity = 92/101 (91.09%), Postives = 92/101 (91.09%), Query Frame = 2 
Query:    2 LAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRERNSKAQAQADTLLQQQDVFEAALARNDATHEARLRRLKQEAGERAARQ 304
            LAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRER       ADTLLQQQD FEAALARNDATHEARLRRLKQEAGERAA Q
Sbjct: 1321 LAPAELQAQLLNELRLHDDLQDAELQADALLAAQRVEEARREARVAGLLLRRER-------ADTLLQQQDAFEAALARNDATHEARLRRLKQEAGERAAHQ 1414
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11762.1514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUD9_ECTSI1.220e-4498.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVQ6_9PHAE9.740e-4191.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11762contigEcto-sp13_S_contig11762:3011..4246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size357
Hectar predicted targeting categoryother localisation
Exons2
Cds size354
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462619.5540588-CDS-Ecto-sp13_S_contig11762:3012..32031681462619.5540588-CDS-Ecto-sp13_S_contig11762:3012..3203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11762 3013..3203 -
1681462619.563961-CDS-Ecto-sp13_S_contig11762:4083..42461681462619.563961-CDS-Ecto-sp13_S_contig11762:4083..4246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11762 4084..4246 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11762.1514.1prot_Ecto-sp13_S_contig11762.1514.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11762 3013..4246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11762.1514.1

>prot_Ecto-sp13_S_contig11762.1514.1 ID=prot_Ecto-sp13_S_contig11762.1514.1|Name=mRNA_Ecto-sp13_S_contig11762.1514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=118bp
ACARRAPGAAVERAPAARRPTGRRASGGRPPGRAEGGGSPTGGACRRAAA
AQGKELQGTGTGGHPAPATRRLRSGLGTERRYPRGSAPAAQAGGRGAGRA
PGGGSDGGDSGDFRGGAR
back to top

mRNA from alignment at Ecto-sp13_S_contig11762:3011..4246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11762.1514.1 ID=mRNA_Ecto-sp13_S_contig11762.1514.1|Name=mRNA_Ecto-sp13_S_contig11762.1514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1236bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11762:3011..4246- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTGCGCCCGCAGAGCTCCAGGCGCAGCTGTTGAACGAGCTCCGGCTGC
ACGACGACCTACAGGACGCCGAGCTTCAGGCGGACGCCCTCCTGGCCGCG
CAGAGGGTGGAGGAAGCCCGACGGGAGGCGCGTGTCGCCGGGCTGCTGCT
GCGCAGGGAAAGGGTAAGTGCGGAGGGAGACAACCCTCGATGGCTCTGCG
GTGTATGGTCGTTGTTGGTGGCTGTTGATGTTGTGGTCATTGGTGTTGTC
TTGTCTTGACGTCCGAAAAACGTTCGGATCTCTGTGCTTATTTGTGCTCA
CATCCGTGCTGGTCCAACTGATGCGGACGAAATCCGTGGTCACAGACTTC
ATATCTGCGGGTACAATGTAGCGGCAAATCGTCCGAGGAGAAAACAATTC
TTGTCGAGCAGTCTTGTCCATGATACGACAATGCTGTTTCGTGTGCACGT
GTACGAGGTCGCTCGCAAATGCCGCGAGTGTCGTGAAGTTGCAAACAACT
TGTTTTAAAGTGCTTCTTTTGCGACAGCGGCATACGGGTAATTGTTGTGG
ATATGACTCCCTGGAGACATGCTCACCTCGAGTGTTTTCGTCGTGAAGTC
GACAGAGTACTGCATCAGAGGCGAACACACTGGGCCATTACTTTCAACGA
CGGTGTTGTTCGCGGTTCGTCAAGCACACCCCTCGACAACGGCAGCTTCT
GGGAGGGTTTCACCGCAACGAGACTGCTGTAGTTTTTGCCCAATCAAGCT
GCGTAGATCGGCAAACTACCGTTTCCTGGCTGTCGGCACTCGCGGAGCAC
CGCTTTGGTTCGCGGTGTTATATGGAGGAGTGCGCGCATACGTCGACCCG
ACTAGGCAGCACCTCGGGGCGGATTATAAGGGTATGGTATACCGTGACCC
TACTACTGTAACCGTGTCACACTCGAGCGGGCCCCAGTTGTCCCGCCTCA
GCCCCAACCGCCTCGCACCCCGGTCGTGCCCGACGTAACCTTGTGCCCGT
AAATGTCCGCCGGCGCTTTGTTATGTTTTCCCTTGTTTTTCAGAACTCCA
AGGCACAGGCACAGGCGGACACCCTGCTCCAGCAACAAGACGTCTTCGAA
GCGGCCTTGGCACGGAACGACGCTACCCACGAGGCTCGGCTCCGGCGGCT
CAAGCAGGAGGCCGGGGAGCGGGCCGCGCGCCAGGCGGAGGCAGCGACGG
TGGCGATAGCGGCGACTTCCGCGGCGGCGCTCGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11762:3011..4246-

>mRNA_Ecto-sp13_S_contig11762.1514.1 ID=mRNA_Ecto-sp13_S_contig11762.1514.1|Name=mRNA_Ecto-sp13_S_contig11762.1514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11762:3011..4246- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTGCGCCCGCAGAGCTCCAGGCGCAGCTGTTGAACGAGCTCCGGCTGC
ACGACGACCTACAGGACGCCGAGCTTCAGGCGGACGCCCTCCTGGCCGCG
CAGAGGGTGGAGGAAGCCCGACGGGAGGCGCGTGTCGCCGGGCTGCTGCT
GCGCAGGGAAAGGAACTCCAAGGCACAGGCACAGGCGGACACCCTGCTCC
AGCAACAAGACGTCTTCGAAGCGGCCTTGGCACGGAACGACGCTACCCAC
GAGGCTCGGCTCCGGCGGCTCAAGCAGGAGGCCGGGGAGCGGGCCGCGCG
CCAGGCGGAGGCAGCGACGGTGGCGATAGCGGCGACTTCCGCGGCGGCGC
TCGG
back to top