mRNA_Ecto-sp13_S_contig11747.1503.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11747.1503.1
Unique NamemRNA_Ecto-sp13_S_contig11747.1503.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: D8LQF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQF1_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.920e-47
Identity = 82/87 (94.25%), Postives = 86/87 (98.85%), Query Frame = 1
Query:   10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNS 270
            +LVCTVPELNPAMDT+RVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQ+ +
Sbjct:  212 KLVCTVPELNPAMDTYRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQLGN 298          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A6H5J8I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8I4_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 9.420e-47
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 1
Query:   10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNS 270
            +LVCTVPELNPAMDT+RVGTVLELVRELAYSMADVGLNTRILIQPSMG+GVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQ+ +
Sbjct:  265 KLVCTVPELNPAMDTYRVGTVLELVRELAYSMADVGLNTRILIQPSMGEGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQLGN 351          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A5J4Y9U0_9CHLO (Adenylate kinase family isoform 1 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9U0_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 2.550e-23
Identity = 47/87 (54.02%), Postives = 65/87 (74.71%), Query Frame = 1
Query:   19 CTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNSHAI 279
            CT+PELNP MD +R+GT+LE+VRE+AY++A+ G   ++ +Q SMG+GVF+ LPL+LSGV  IM  MDW D  +G  V+FG+V    I
Sbjct:  118 CTIPELNPEMDVYRIGTLLEMVREMAYALAEDGKLVKVCVQQSMGQGVFQGLPLSLSGVRKIMNMMDWGD--IGEFVSFGEVGRDQI 202          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: W7TPW6_9STRA (DUF1995 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPW6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 2.330e-20
Identity = 40/91 (43.96%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   28 PELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQVNSHAI 279
            PE NPA DT+R+GT+LELVRELA+     G   ++ +Q  MG+G+FK LP++L+G   I++ MDW+       +G+VG+ ++FG+V  H +
Sbjct:  255 PESNPAFDTYRIGTILELVRELAFHQVSCGKRVKLCVQQKMGEGIFKGLPISLNGCRFILENMDWQSKEGEEKEGVVGTQIHFGEVGEHVV 345          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A7S2JTX6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JTX6_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 4.210e-20
Identity = 44/97 (45.36%), Postives = 65/97 (67.01%), Query Frame = 1
Query:   10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQVNSHAI 279
            Q+ C  PELN AMD +RVGT+LE+ R LA ++A+  L  R+ +Q SMG G+F ++P  LSGV +++Q MDW+       +G+VG++VNFG V    +
Sbjct:  280 QITCLFPELNTAMDAYRVGTLLEMARALAITLAEQNLRVRVCVQGSMGVGIFTAIPKQLSGVATLLQRMDWQSGEGEENEGMVGTYVNFGGVGKEHV 376          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A7S1BB49_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BB49_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 6.410e-20
Identity = 44/97 (45.36%), Postives = 63/97 (64.95%), Query Frame = 1
Query:   10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWED-------GLVGSHVNFGQVNSHAI 279
            QL C  PE+NP MD++R+GT+LELVR +A  +A+  L  R+ +Q SMG G+F   P +LSGV +++  MDW+        G+VG +VNFG V S  +
Sbjct:  249 QLTCLFPEMNPEMDSYRIGTLLELVRNIATVIAEQNLRVRVCVQGSMGVGIFTGTPKSLSGVSTLLNRMDWQSEEGERNAGMVGDYVNFGNVGSEHV 345          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A835YYF4_9STRA (G_PROTEIN_RECEP_F3_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYF4_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.680e-19
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 1
Query:   43 AMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNSHAI 279
            A DT+RVGT+LELVRELA  +AD G   ++ +Q SMG G+F  LPL+LSG  +IM+ MDW +G VG+ VNFG+V +  +
Sbjct: 1998 APDTYRVGTMLELVRELATGLADEGKRVKVCVQGSMGVGIFTGLPLSLSGTRAIMERMDWGEGYVGASVNFGKVGAEFV 2076          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: B8BXQ4_THAPS (Adenylate-kinase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXQ4_THAPS)

HSP 1 Score: 87.4 bits (215), Expect = 3.580e-19
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 1
Query:   28 PELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQV 264
            PE+NP+MD++R+GT+LEL R +A  +A+  L  R+ +Q SMG G+F  +P  L+GV +++Q MDWE       +G+VG +VNFG V
Sbjct:   45 PEMNPSMDSYRIGTLLELARSIAIKLAEQNLRVRVCVQGSMGVGIFTGIPKQLNGVSTLLQRMDWESEVGEENEGMVGDYVNFGFV 130          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A0E0LTC0_ORYPU (Adenylate kinase n=4 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0LTC0_ORYPU)

HSP 1 Score: 90.1 bits (222), Expect = 4.770e-19
Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   10 QLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWED-GLVGSHVNFGQVNSHAI 279
            Q+   +PELNP MD +R+GT++ELVREL+ S AD G   ++ +Q SMG+G F  +PL L+G   I++ MDW D G  G+ +NFG V ++ +
Sbjct:  359 QIDINIPELNPEMDVYRIGTLMELVRELSLSFADDGKRVKVCVQGSMGQGAFAGIPLQLAGTRKILEIMDWGDYGAKGTFINFGAVGANEV 449          
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Match: A0A7S1ZVD1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVD1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 5.600e-19
Identity = 39/96 (40.62%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   13 LVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSMGKGVFKSLPLALSGVMSIMQGMDWE-------DGLVGSHVNFGQVNSHAI 279
            + C  PE+NP+MD++R+GT+LEL R +A  +A+  L  R+ +Q SMG G+F   P  L+GV +++Q MDW+       +G+VG +VNFG +    +
Sbjct:   55 MTCMFPEMNPSMDSYRIGTLLELARSVAIKLAEQNLRVRVCVQGSMGVGIFTGTPKQLNGVSTLLQRMDWQSNAGEENEGMVGDYVNFGAIGKDHV 150          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11747.1503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF1_ECTSI1.920e-4794.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J8I4_9PHAE9.420e-4793.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5J4Y9U0_9CHLO2.550e-2354.02Adenylate kinase family isoform 1 n=1 Tax=Trebouxi... [more]
W7TPW6_9STRA2.330e-2043.96DUF1995 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S2JTX6_9STRA4.210e-2045.36Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1BB49_9STRA6.410e-2045.36Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A835YYF4_9STRA2.680e-1954.43G_PROTEIN_RECEP_F3_4 domain-containing protein n=1... [more]
B8BXQ4_THAPS3.580e-1946.51Adenylate-kinase (Fragment) n=1 Tax=Thalassiosira ... [more]
A0A0E0LTC0_ORYPU4.770e-1946.15Adenylate kinase n=4 Tax=Oryza punctata TaxID=4537... [more]
A0A7S1ZVD1_9STRA5.600e-1940.63Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11747contigEcto-sp13_S_contig11747:26..304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score166.0
Seed ortholog evalue8.3e-39
Seed eggNOG ortholog2880.D8LQF1
Model size279
KEGG rclassRC00002
KEGG koko:K18533
KEGG ReactionR00124,R00127,R00156,R00330,R00570,R00722,R01137,R01547,R01857,R02093,R02326,R02331,R03530
KEGG Pathwayko00230,ko00240,ko01100,ko01110,ko01130,map00230,map00240,map01100,map01110,map01130
KEGG ModuleM00049,M00052,M00053
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.adenylate kinase activity
EggNOG OGsCOG0563@1,KOG3078@2759
EC2.7.4.3,2.7.4.6
Cds size279
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.6289005-CDS-Ecto-sp13_S_contig11747:25..3041681462618.6289005-CDS-Ecto-sp13_S_contig11747:25..304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11747 26..304 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11747.1503.1prot_Ecto-sp13_S_contig11747.1503.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11747 26..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11747.1503.1

>prot_Ecto-sp13_S_contig11747.1503.1 ID=prot_Ecto-sp13_S_contig11747.1503.1|Name=mRNA_Ecto-sp13_S_contig11747.1503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
VYVQLVCTVPELNPAMDTFRVGTVLELVRELAYSMADVGLNTRILIQPSM
GKGVFKSLPLALSGVMSIMQGMDWEDGLVGSHVNFGQVNSHAI
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mRNA from alignment at Ecto-sp13_S_contig11747:26..304+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11747.1503.1 ID=mRNA_Ecto-sp13_S_contig11747.1503.1|Name=mRNA_Ecto-sp13_S_contig11747.1503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11747:26..304+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATATGTACAGCTGGTGTGCACGGTTCCCGAGCTCAACCCGGCCATGGA CACCTTCCGCGTGGGCACGGTTCTGGAGTTGGTGCGCGAGCTTGCCTACT CGATGGCCGACGTGGGCCTCAACACGCGAATCCTCATCCAGCCGAGCATG GGGAAGGGGGTGTTCAAGAGCCTTCCGCTAGCCCTGTCGGGGGTGATGTC TATCATGCAGGGGATGGACTGGGAGGACGGGCTCGTGGGGTCTCACGTCA ACTTTGGCCAGGTAAATTCACACGCGATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11747:26..304+

>mRNA_Ecto-sp13_S_contig11747.1503.1 ID=mRNA_Ecto-sp13_S_contig11747.1503.1|Name=mRNA_Ecto-sp13_S_contig11747.1503.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11747:26..304+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTATATGTACAGCTGGTGTGCACGGTTCCCGAGCTCAACCCGGCCATGGA
CACCTTCCGCGTGGGCACGGTTCTGGAGTTGGTGCGCGAGCTTGCCTACT
CGATGGCCGACGTGGGCCTCAACACGCGAATCCTCATCCAGCCGAGCATG
GGGAAGGGGGTGTTCAAGAGCCTTCCGCTAGCCCTGTCGGGGGTGATGTC
TATCATGCAGGGGATGGACTGGGAGGACGGGCTCGTGGGGTCTCACGTCA
ACTTTGGCCAGGTAAATTCACACGCGATT
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