mRNA_Ecto-sp13_S_contig11745.1501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11745.1501.1
Unique NamemRNA_Ecto-sp13_S_contig11745.1501.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: D7G770_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G770_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.590e-57
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT 291
            KVALLGKASKSTPVKEIATMGANLV+ASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT
Sbjct:  115 KVALLGKASKSTPVKEIATMGANLVIASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT 210
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A835YGF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGF7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.710e-42
Identity = 68/96 (70.83%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT 291
            K+ALLG+ S++T VKE+ATMGAN++VA KSD++ DCM KM+ARDIRHLPV+DEE G VVGMLS+KDL+KEV  EKE ++ K+ DFKLGRGGFFEHT
Sbjct:  115 KIALLGRQSQTTKVKEVATMGANIIVAKKSDSLHDCMRKMLARDIRHLPVLDEESGTVVGMLSIKDLIKEVAHEKEALIAKLKDFKLGRGGFFEHT 210
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A7S1XTH5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTH5_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.470e-38
Identity = 64/95 (67.37%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEH 288
            K+ALLG+ S  T V E+ T GAN+VVA  +D++Q+CM KM+ARDIRHLPVV+EE GQVVGMLSVKDL+KE+ +EK+EI+TK+TDF +GRG FFEH
Sbjct:   92 KIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEH 186
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A7S1U998_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U998_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.340e-37
Identity = 64/95 (67.37%), Postives = 81/95 (85.26%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEH 288
            K+ALLG+ S  T V E+ T GAN+VVA  +D++Q+CM KM+ARDIRHLPVV+EE GQVVGMLSVKDL+KE+ +EK+EI+TK+TDF +GRG FFEH
Sbjct:  188 KIALLGRKSVDTKVSEVCTSGANMVVARTTDSVQECMGKMLARDIRHLPVVEEETGQVVGMLSVKDLIKELVKEKDEIITKLTDFTMGRGAFFEH 282
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A7R9UAT3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAT3_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.060e-31
Identity = 60/95 (63.16%), Postives = 77/95 (81.05%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEH 288
            KVALLG+ S    V EI T  AN+VVA+ SD++QDCM  M+ARDIRHLPVV E+ G VVGMLSVKDL+KE+ +EK+E+++K+TDF +GRG +FEH
Sbjct:  131 KVALLGRKSVDVKVSEICTSEANMVVANTSDSVQDCMGMMLARDIRHLPVVGED-GDVVGMLSVKDLIKELVKEKDEMISKLTDFTMGRGAYFEH 224
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A4D9D580_9STRA (CBS domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D580_9STRA)

HSP 1 Score: 115 bits (287), Expect = 4.650e-30
Identity = 52/86 (60.47%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:   31 KSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEH 288
            KST V E+ T G+N+VVA  +D++  CM KM+A+DIRHLPVVD+EK +VVGMLS+KDL+KE+ +EK++I+ K+TDF LG+G FF+H
Sbjct:  124 KSTTVGEVCTRGSNIVVAKTTDSIATCMKKMLAKDIRHLPVVDDEKKEVVGMLSIKDLIKELQKEKDDIIEKLTDFNLGKGAFFQH 209
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A7S2PA47_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PA47_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.840e-28
Identity = 53/93 (56.99%), Postives = 75/93 (80.65%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFF 282
            K+ALL K SK TP+KEI+T  ANL+VAS S+T+ DCMAKM+ +DIRHLP++DE+ G VVG++S+KDL+K   +EK++ +  ++DF LG+GG F
Sbjct:   97 KIALLSKTSKDTPIKEISTKSANLIVASPSETVSDCMAKMLLKDIRHLPLLDEDGG-VVGIVSIKDLVKAELKEKQDAIKTLSDFALGKGGHF 188
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A6C0H1P6_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0H1P6_9ZZZZ)

HSP 1 Score: 107 bits (266), Expect = 2.480e-27
Identity = 46/93 (49.46%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFF 282
            KVA LGK      +KEI T G ++++A K D+++ CM KM+ +DIRHL V+D++  + VGM+S+KDL+KE+ ++K++++T++TDFKLG+GGFF
Sbjct:   76 KVAALGKNGDVVKIKEICTYGPHIIIAKKDDSLEQCMNKMLFKDIRHLLVIDDKNEEFVGMISIKDLIKEIMKDKDDMITRLTDFKLGKGGFF 168
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A7S2HI08_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HI08_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.150e-27
Identity = 49/93 (52.69%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFF 282
            K+ALLG+ S  T VKEI+T  +NLV AS  D++  CM KM+++D+RHLP++++E G+VVGMLS+KDL+K    EKE+ +  ++DF LG+GG F
Sbjct:   19 KIALLGRKSSETKVKEISTKASNLVTASPKDSVDACMYKMLSKDVRHLPLLEDESGKVVGMLSIKDLVKAAVAEKEKTIKILSDFALGKGGHF 111
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BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Match: A0A6C0DQH1_9ZZZZ (CBS domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DQH1_9ZZZZ)

HSP 1 Score: 105 bits (261), Expect = 1.380e-26
Identity = 46/93 (49.46%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:    4 KVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLPVVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFF 282
            KV+ LGK  K+  VKEI T   NL++A K DT++ CM KM+ +DIRHL V+DE   + +GM+S+KDL+KE+ ++K +I+T++TD   G+GG+F
Sbjct:   75 KVSALGKDDKTVKVKEICTYKPNLIIAKKGDTIEQCMNKMLVKDIRHLLVIDESNNEFIGMISIKDLIKEIMKDKNDIITRLTDLTTGKGGYF 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11745.1501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G770_ECTSI2.590e-5798.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YGF7_9STRA7.710e-4270.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XTH5_9STRA3.470e-3867.37Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1U998_9STRA4.340e-3767.37Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UAT3_9STRA1.060e-3163.16Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A4D9D580_9STRA4.650e-3060.47CBS domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2PA47_9STRA1.840e-2856.99Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A6C0H1P6_9ZZZZ2.480e-2749.46Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7S2HI08_9STRA4.150e-2752.69Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6C0DQH1_9ZZZZ1.380e-2649.46CBS domain-containing protein n=1 Tax=viral metage... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11745contigEcto-sp13_S_contig11745:30..1263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score187.2
Seed ortholog evalue3.7e-45
Seed eggNOG ortholog2880.D7G770
Model size294
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009651,GO:0009987,GO:0019725,GO:0042592,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045454,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0065007,GO:0065008
Exons2
EggNOG free text desc.Domain in cystathionine beta-synthase and other proteins.
EggNOG OGs2QQ7J@2759,COG0517@1
Cds size294
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.458163-CDS-Ecto-sp13_S_contig11745:29..2031681462618.458163-CDS-Ecto-sp13_S_contig11745:29..203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11745 30..203 +
1681462618.4711273-CDS-Ecto-sp13_S_contig11745:1143..12631681462618.4711273-CDS-Ecto-sp13_S_contig11745:1143..1263Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11745 1144..1263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11745.1501.1prot_Ecto-sp13_S_contig11745.1501.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11745 30..1263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11745.1501.1

>prot_Ecto-sp13_S_contig11745.1501.1 ID=prot_Ecto-sp13_S_contig11745.1501.1|Name=mRNA_Ecto-sp13_S_contig11745.1501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
RKVALLGKASKSTPVKEIATMGANLVVASKSDTMQDCMAKMVARDIRHLP
VVDEEKGQVVGMLSVKDLLKEVTREKEEILTKVTDFKLGRGGFFEHT*
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mRNA from alignment at Ecto-sp13_S_contig11745:30..1263+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11745.1501.1 ID=mRNA_Ecto-sp13_S_contig11745.1501.1|Name=mRNA_Ecto-sp13_S_contig11745.1501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11745:30..1263+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAAGGTTGCTCTTCTGGGGAAGGCGAGCAAGAGCACCCCGGTCAAGGA
GATCGCCACCATGGGCGCTAACCTGGTGGTTGCCTCTAAGAGCGACACCA
TGCAGGACTGCATGGCCAAGATGGTGGCGAGGGATATCCGCCATCTTCCC
GTGGTGGACGAGGAGAAGGGACAGGTGCGAAGGGATGGATGGATCGACGA
GCATCTTGAAGCTCGCTCGACGTTCTCTTGTGGTGTCTTAGTTTTGATGC
TTGTGGGTACTGACTAAGGGCACGCAAGCTTGCTTGGGTGTGCTGCGGCA
GACTTGAGTTCGAGCCCTTGATGTGTTGCACCAGGTCGGAGTATGTTCGT
TGATTGTTGGAGTTCATCCTCTGTTTTTCAATCCAAACGATGTCTGGTGT
CTCCGCCGATCGCAGGAGCGTTGTGCTCTTAGGAGCGTCGTCCCTCTCAA
GCATGGAACAAAATGCAAAAAACCGCGGTCTCCGGGTTGCATCAATCCAA
CCTCGCCGTTTGTTCAGCGTGCATTTGAGGAAGCGTGCTATGCATACGTG
GTTGATTGCAGAACTCCTTGATATTGACAGCCCAGCTTTGCTGCAGACCT
TTGGTGGGGGGAAACGCTCCGGTTGCTCTCGAGTCAGGATGCAACCTATT
CATCTACGTATGCATACGGTCTACGGGCTTGCCGTGTTCTTCCGATTTGA
ACGTGTTGGTGTCAACAGCCCTCTTGGGGTTGGTTGGGTGTTGAGCTCGT
CAAGTACTCATGGTTGAGAGATCGGTGCGCTCGGGAAGCGCAGCTCTCTC
TCTCTCGGCGAGTGATGCATGAAACGAAGCGTTTTTATCGATTCGACCTT
CGAATGCAAATGGCATACCCCTACCAGAAGCATATTCCCTGAGCCTCCCC
TCTCGACAACAAGTGCTTTGGGAATGTGCCGCCCAGCGTCCAGCGGTGCT
TTGATGCGTATTTGGTTTTCCCTCCCGCGTTGGGAACAGATGATGGTCTT
GTACTTTCGAAAACTCGTCCGCTCTCGTTCGGTTTACAACATATAGAGAC
TGCATCATAAAGCAACGGAGCATTGATCAACGACCACAACGGTTTTGCCA
TTGAAACAATCAAGGTGGTGGGGATGCTGAGCGTGAAGGACTTGCTGAAG
GAGGTGACGAGGGAGAAGGAGGAGATCCTCACCAAGGTCACGGACTTCAA
ACTCGGCCGCGGAGGCTTCTTCGAGCACACATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11745:30..1263+

>mRNA_Ecto-sp13_S_contig11745.1501.1 ID=mRNA_Ecto-sp13_S_contig11745.1501.1|Name=mRNA_Ecto-sp13_S_contig11745.1501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11745:30..1263+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAAAGGTTGCTCTTCTGGGGAAGGCGAGCAAGAGCACCCCGGTCAAGGA
GATCGCCACCATGGGCGCTAACCTGGTGGTTGCCTCTAAGAGCGACACCA
TGCAGGACTGCATGGCCAAGATGGTGGCGAGGGATATCCGCCATCTTCCC
GTGGTGGACGAGGAGAAGGGACAGGTGGTGGGGATGCTGAGCGTGAAGGA
CTTGCTGAAGGAGGTGACGAGGGAGAAGGAGGAGATCCTCACCAAGGTCA
CGGACTTCAAACTCGGCCGCGGAGGCTTCTTCGAGCACACATGA
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