mRNA_Ecto-sp13_S_contig10119.150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10119.150.1
Unique NamemRNA_Ecto-sp13_S_contig10119.150.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: D7G365_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G365_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 3.540e-59
Identity = 115/228 (50.44%), Postives = 141/228 (61.84%), Query Frame = 3
Query:  687 VIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLE-----PVLHNPNRYSW--------------------------ESAAVDAGVTPASIRDALGVRGDDSHGMVQLADAVGD-CTDDIEDLLYLAQTFSMVKALEMNRDGSVQAAEFHPESNDETMDMRTCAASA 1274
            +IALLAENSRV+HAD+YIY + GWK SAQEAMKEGWN I++ EY+ SLE NLNVDL  L G  QAF + SE+Y QL  LRSDG WT LLLD+         P LHNPNR SW                          ESAA+DAG+TP+ IR+ LG+ G DS   VQLAD VG  C  D+ED++YLA    +V+ +E+N DGSV+A +    + DE +  R C   A
Sbjct:  143 IIALLAENSRVHHADEYIYGDHGWKVSAQEAMKEGWNAIVSPEYVRSLEENLNVDLGGLEGIIQAFDLLSELYAQLYDLRSDGLWTSLLLDNSSFGGSADGPTLHNPNRDSWVRAAFVFGVKPVWMSCYCVVQRPGDKESAALDAGLTPSRIREILGLDGGDSTATVQLADLVGTGCDGDVEDVVYLADALGLVETIELNADGSVEAVQLCAAAEDEPIATRICKVDA 370          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A6C0JAQ4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JAQ4_9ZZZZ)

HSP 1 Score: 156 bits (394), Expect = 8.080e-37
Identity = 105/346 (30.35%), Postives = 160/346 (46.24%), Query Frame = 3
Query:   12 PRSGMSNQLGLYTRTRGEDYMCSTCTTCDLKDYTGSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNGTGRYAQYGFDWLLEVAPSPHAGIFGCTE-------------EGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWE 1010
            P  GMS+ +      R ++Y          KDY GSYH++++LP   N         L+K                      ++D H NFANM+QWIEPL++  F S D  ++    K + GSYR +  GWG    +DVR     G GRY+     W   +       I  C +              G  S+ RT  S D            M +G G+E+R+FD+FPIK + S+ ++I+L+AENSRV+   DY+Y N+GW  + +E MK GW   L   + + L + L++ L++   +  A+ +   +Y +L    S G +  +L+ D      L   NR S+E
Sbjct:  159 PPFGMSSYIKTSENYRSKNYKLRPKL---YKDYCGSYHITLTLPYKKN-------MKLSK----------------------FIDIHKNFANMIQWIEPLMITAFFSADDKSMGTSKKKVRGSYRVVRTGWGNLAGSDVRKLD-KGIGRYSNIPSYWRKGLTFDEQKMINYCKDLSPVLKKREPGAKAGFSSNFRTFGSTDPDRPEHRESGIGMTIGNGIELRIFDHFPIKYLNSLLQLISLIAENSRVHKCTDYVYKNKGWIHAVKEIMKYGWCAKLTNGFKNKLRKMLDIPLAT--SSLIAYDIMKTLYKELYDKNSKGDYYIILVGDNKKYIELPEINRKSFE 469          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A7S4ID32_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ID32_9STRA)

HSP 1 Score: 145 bits (365), Expect = 4.140e-35
Identity = 100/276 (36.23%), Postives = 144/276 (52.17%), Query Frame = 3
Query:  612 MDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSL---------ERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVD-LEPVLHNPNRYSWESAAVDAG---------VTPASIRDA---------LGVRG------DDSHGMVQLAD--------AVGDC-TDDIEDLLYLAQTFSMVKALEMNRDGSVQAAE-------FHPESNDETMDM-------RTCAA 1268
            M+ G G+E+ + DNF I+++  VYR++AL+AE  R   A +YIYD++ W A+ ++ MKEGWN IL  +Y+  L         E+   VD S L G TQAF VFS VY  L    +DGFWT LLL++V  + P   NPNR SWE AA   G         + P   RD+           +RG      D    +V +++        + G C  +D+EDL+YLAQ++ M+K L +  DG+V+          F  ++N  + DM       RTCA+
Sbjct:    7 MEPGDGVELTILDNFGIEHLPQVYRLLALIAEAGRTRTASNYIYDDESWIAAIRQVMKEGWNAILPADYVSGLCAALGIEEEEKEALVD-SKLRGTTQAFEVFSAVYGALWEAHADGFWTRLLLENVPKVMPEPSNPNRDSWEMAAAHDGFNVERLYRYLVPGDFRDSPPADSVKSGRRIRGAAAAAEDLRRPVVSVSELRAAYLNFSPGACGVEDVEDLIYLAQSYGMIKELVLEDDGTVRRFTLRDPRELFWRDANARSDDMPEYLIYERTCAS 281          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A5B8IGP8_9VIRU (Uncharacterized protein n=1 Tax=Mimiviridae sp. ChoanoV1 TaxID=2596887 RepID=A0A5B8IGP8_9VIRU)

HSP 1 Score: 149 bits (376), Expect = 3.130e-34
Identity = 101/326 (30.98%), Postives = 153/326 (46.93%), Query Frame = 3
Query:  105 DYTGSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVC--DDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNGTGRYAQYGFDWLLEVAPSPHAGIFGCTEEG------------MGSDIRTK----SSVDEHLMAPGSELPPMDVGQ-----GLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLE-PVLHNPNRYSWE 1010
            DYTGSYHV+I+LP                    C E  + +++        ++  H NFAN  QWIEPLL+A   S D   +   D  K I GS+R ++ GWG    ++VR   T+G GRY+     W   +  +    +  C E+             + SDIRT     S           E P +  G      G+EIR+FD+F   ++  + R +  L+EN+R++   +Y+Y N  WK + +  MK GW  IL+ +YI  L +NLN++L+    N  AF     +  +L     +GF+  LL++    E P L   NR+SW+
Sbjct:  259 DYTGSYHVTITLP--------------------CREN-ISDYE--------FIKLHQNFANQFQWIEPLLLASLFSGDPRTITEKDYNKKIRGSFRILATGWGNLAGSNVRKLGTSGVGRYSNIESVWRKGLNFNSTKKLMECDEKAKKNKNLKKRGSILSSDIRTFNFDFSDKCSERTGRSDECPKVSGGNMVHPNGMEIRIFDHFNSVHLIDLLRFMVYLSENARLFETKNYVYSNLTWKTAVRNIMKNGWRAILSDKYIDELRKNLNLELNFK--NKTAFGFLEALNEELFMNHKNGFFPSLLIEKKYREAPDLPELNRFSWQ 553          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A2L2DIJ5_MIMIV (Uncharacterized protein n=9 Tax=Mimivirus TaxID=315393 RepID=A0A2L2DIJ5_MIMIV)

HSP 1 Score: 82.8 bits (203), Expect = 7.840e-13
Identity = 64/300 (21.33%), Postives = 124/300 (41.33%), Query Frame = 3
Query:  114 GSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNGTGRYAQYGFDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWES 1013
            G+YH++I++P   N   L ++                           +++ H N   +++WIEP ++A++GSPD  +  D+ K+  GS R  ++ +   GT D +T          +      L    S +  I+  T+   G +I    +  +HL              G+E R+ D FP   +KS+   + LL ++S         Y++  W    + ++  G+N  +  + I +L ++L   +     NT   + +       +H +        L+     +P+L+N N+Y WE+
Sbjct:  213 GTYHINITIPTKLNNQGLIDDKIK------------------------FIEQHCNAIKLIKWIEPFIIALYGSPDVFSFNDESKYSAGSLRLTASRYVSIGTFDAKTMKIGKQLNDIKTIMPVYLNDK-SWYNKIYNITDYKPGDNIGYDINYSKHL------------NSGIEFRILDFFPEIALKSLLDFLILLLDHSLQNDIKISCYESDEWHEFTKNSLLYGYNARIPYKLIITLHKSLGFPII----NTSNISTYLLQLIDFLHNKYANSTCSKLMSPDMSKPILYNVNQYMWEN 471          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: M1PC85_9VIRU (Uncharacterized protein n=1 Tax=Moumouvirus goulette TaxID=1247379 RepID=M1PC85_9VIRU)

HSP 1 Score: 79.3 bits (194), Expect = 9.670e-12
Identity = 70/307 (22.80%), Postives = 128/307 (41.69%), Query Frame = 3
Query:  114 GSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNG------TGRYAQ-YGFDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWES 1013
            G+YH++I++P           + L + GS          D+ E     +++ H N   +++WIEP ++A++GSPD  +  D+GK+  GS R  ++ +   GT D +   T        T  YA  Y   W  +        I+  T+     +I    +  +HL              G+E+R+ D FP + ++++   I LL ++S     +   Y++  W    +  +  G+   +  + +  L R L   L     NT     +       ++ + +      L+     +P LHN NRY WE+
Sbjct:  212 GTYHINITMP-----------TKLNEYGS---------IDNKED----FLNKHKNAIKIIKWIEPFIVALYGSPDVFSFEDNGKYSSGSLRLTASRYVSIGTYDTKIMKTGKQLNDLKTLMYAYLYDKSWYNK--------IYSVTDYKQVENIGYDINYAKHL------------NSGIELRILDYFPEECLENLINFIILLLDHSLENKINISCYESDEWHEFTKNVLLYGYTSKIPFKLLIILNRILKFPLI----NTSDVVTYINSLIDYLYSKYNNSNCSSLMSPNMKKPKLHNVNRYMWEN 470          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A8K1T113_9VIRU (Uncharacterized protein n=1 Tax=Megavirus baoshan TaxID=2496520 RepID=A0A8K1T113_9VIRU)

HSP 1 Score: 77.8 bits (190), Expect = 3.000e-11
Identity = 63/305 (20.66%), Postives = 124/305 (40.66%), Query Frame = 3
Query:  114 GSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNGTGRYAQ-----YGFDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWES 1013
            G+YH++I++P   N   L ++                           +++ H N   +++WIEP ++A++GSPD  +  D+ K+  GS R  ++ +   GT D +T          +     Y +D       S +  I+  T+   G DI    +  +HL              G+E R+ D FP   +KS+   + LL ++S         Y++  W    + ++  G+   +  + +  + ++L   +     NT   + +       +H +        L+     +P+L+N N+Y WE+
Sbjct:  213 GTYHINITMPTKLNDQGLIDDKIK------------------------FMEQHRNAIKIIKWIEPFIIALYGSPDVFSFNDNFKYSGGSLRLTASRYVSIGTFDTKTMKIGKQLNDIKTIMPIYSYD------KSWYNKIYNVTDYKPGDDIGYDINYSKHL------------NSGIEFRILDFFPEIALKSLIDFLILLLDHSLENDIKISCYESDEWHEFTKNSLLYGYTAHVPYKLVVIMHKSLGFPII----NTSNISTYMSQLIDFLHNKYMNSTCSKLMSPNMSKPILYNINQYMWEN 471          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: L7RBX7_9VIRU (Uncharacterized protein n=3 Tax=Moumouvirus TaxID=985782 RepID=L7RBX7_9VIRU)

HSP 1 Score: 75.9 bits (185), Expect = 1.210e-10
Identity = 64/301 (21.26%), Postives = 125/301 (41.53%), Query Frame = 3
Query:  114 GSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNGT-GRYAQYGFDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWES 1013
            G+YH++I++P         NE+ L           +   DD       +++ H N   +++WIEP ++A++GSPD  +  D+ K+  GS R  ++ +   GT D +   T           F +L +   S +  I+  T+     +I    +  +HL              G+E R+ D +P + ++ +   + LL ++S     +   Y++  W    +  + +G+   +  + + +L + L   L     NT     +       ++ +        L+     +P LHN NRY WE+
Sbjct:  213 GTYHINITMP------TKLNENGL-----------IENKDD-------FLNKHKNAIKIIKWIEPFIIALYGSPDVFSFEDNNKYSSGSLRLTASRYVSIGTYDTKVMKTGKQLNDLKTTMFTYLYDK--SWYNKIYNITDYKQVDNIGYDINYAKHL------------NSGIEFRILDYYPEECLEDLINFMILLLDHSLENKINISCYESDEWHEFTKNVLLDGYTSKIPYKLLITLNKILKFPLI----NTYNVTTYINSLIDFLYAKYKNGPCSSLMSPNMKKPKLHNVNRYMWEN 471          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A650DA61_9VIRU (Uncharacterized protein n=3 Tax=Moumouvirus TaxID=985782 RepID=A0A650DA61_9VIRU)

HSP 1 Score: 75.5 bits (184), Expect = 1.570e-10
Identity = 67/310 (21.61%), Postives = 126/310 (40.65%), Query Frame = 3
Query:  114 GSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTF----------TTNGTGRYAQYGFDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWES 1013
            G+YH++I++P         NES L ++     E ++ +              H N   +++W+EP ++A++GSPD  +  DD K+  GS R  ++ +   GT D +            TT  T  Y +  ++ +  +             + +G DI    +  +HL              G+E R+ D FP + ++ +   I LL ++S     +   Y++  W    +  + +G+   +  + I  L + L   L     NT     +       ++ +        L+    ++P LHN NRY WE+
Sbjct:  212 GTYHINITIP------TKLNESGLIEN----EEEFLVK--------------HKNAIKIIKWMEPFIIALYGSPDVFSFEDDKKYSSGSLRLTASRYVSIGTYDTKIMKKGKQLNDPKTTMFTYLYDKSWYNKIYSITDYKQV-------DNIGYDI----NYAKHL------------NSGIEFRILDYFPEECLQDLINFIILLLDHSLENKINISCYESDEWHEFTKNVLLDGYTSKIPYKLIIILNKVLKFPLI----NTSNIISYINSLIDFLYTKHKNGTCSSLMSPNMVKPKLHNVNRYMWEN 470          
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Match: A0A6N1NNN9_9VIRU (Uncharacterized protein n=1 Tax=Tupanvirus soda lake TaxID=2126985 RepID=A0A6N1NNN9_9VIRU)

HSP 1 Score: 72.0 bits (175), Expect = 1.960e-9
Identity = 66/307 (21.50%), Postives = 124/307 (40.39%), Query Frame = 3
Query:  114 GSYHVSISLPKDPNGWVLYNESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAVFGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDV------RTFTTNGTGRYAQ-YGFDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVGQGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQEAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHLRSDGFWTGLLLDDVDLEPVLHNPNRYSWES 1013
            G+YH++I++P         +++A   D                  + ++ + H N   +++WIEPLL+A++GSPD  +  D+GK+  GS R  ++ +   GT +       +      T  +A  Y   W  +        I+  T    G  I    +  +H  A            G+E R+FD FP + +  +   I LL +++         Y+ Q W       + +G+ G +  + I S  + +   +         FA+  +     ++ +  G +    +     +P LHN N+Y WE+
Sbjct:  213 GTYHINITIP------TKLDDNANIAD------------------LNLFENQHRNVVRLLKWIEPLLIAIYGSPDVFSFEDNGKYSAGSLRLTASRYISIGTYNSVLMKKGKLLQDTKTNMHAYLYKKSWYNQ--------IYKTTNYVQGDQIGYDINYCKHYNA------------GIEFRIFDYFPEEALTDIINFIVLLLDHALENEIKISCYECQEWHNFTATVLHDGYIGKIPHQMIMSYHKIVGFPMIIEPTIKDYFAILIDY----LYKKYCGSYCSANMSPGMKKPRLHNVNQYMWEN 471          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10119.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G365_ECTSI3.540e-5950.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6C0JAQ4_9ZZZZ8.080e-3730.35Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A7S4ID32_9STRA4.140e-3536.23Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A5B8IGP8_9VIRU3.130e-3430.98Uncharacterized protein n=1 Tax=Mimiviridae sp. Ch... [more]
A0A2L2DIJ5_MIMIV7.840e-1321.33Uncharacterized protein n=9 Tax=Mimivirus TaxID=31... [more]
M1PC85_9VIRU9.670e-1222.80Uncharacterized protein n=1 Tax=Moumouvirus goulet... [more]
A0A8K1T113_9VIRU3.000e-1120.66Uncharacterized protein n=1 Tax=Megavirus baoshan ... [more]
L7RBX7_9VIRU1.210e-1021.26Uncharacterized protein n=3 Tax=Moumouvirus TaxID=... [more]
A0A650DA61_9VIRU1.570e-1021.61Uncharacterized protein n=3 Tax=Moumouvirus TaxID=... [more]
A0A6N1NNN9_9VIRU1.960e-921.50Uncharacterized protein n=1 Tax=Tupanvirus soda la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10119contigEcto-sp13_S_contig10119:622..3991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2063
Hectar predicted targeting categoryother localisation
Exons5
Cds size1266
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10119.150.1prot_Ecto-sp13_S_contig10119.150.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10119 645..3217 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.9552715-UTR-Ecto-sp13_S_contig10119:621..6441681462508.9552715-UTR-Ecto-sp13_S_contig10119:621..644Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10119 622..644 +
1681462509.0242653-UTR-Ecto-sp13_S_contig10119:3217..39911681462509.0242653-UTR-Ecto-sp13_S_contig10119:3217..3991Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10119 3218..3991 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.9669025-CDS-Ecto-sp13_S_contig10119:644..8961681462508.9669025-CDS-Ecto-sp13_S_contig10119:644..896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10119 645..896 +
1681462508.983221-CDS-Ecto-sp13_S_contig10119:1219..13671681462508.983221-CDS-Ecto-sp13_S_contig10119:1219..1367Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10119 1220..1367 +
1681462508.9974217-CDS-Ecto-sp13_S_contig10119:1556..16241681462508.9974217-CDS-Ecto-sp13_S_contig10119:1556..1624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10119 1557..1624 +
1681462509.0055947-CDS-Ecto-sp13_S_contig10119:2033..25491681462509.0055947-CDS-Ecto-sp13_S_contig10119:2033..2549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10119 2034..2549 +
1681462509.0164564-CDS-Ecto-sp13_S_contig10119:2935..32171681462509.0164564-CDS-Ecto-sp13_S_contig10119:2935..3217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10119 2936..3217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10119.150.1

>prot_Ecto-sp13_S_contig10119.150.1 ID=prot_Ecto-sp13_S_contig10119.150.1|Name=mRNA_Ecto-sp13_S_contig10119.150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=422bp
MSNQLGLYTRTRGEDYMCSTCTTCDLKDYTGSYHVSISLPKDPNGWVLYN
ESALTKDGSTCSETYVREFDDSETPVGVWVDAHMNFANMVQWIEPLLMAV
FGSPDADAVCDDGKFIEGSYRTMSAGWGVPGTTDVRTFTTNGTGRYAQYG
FDWLLEVAPSPHAGIFGCTEEGMGSDIRTKSSVDEHLMAPGSELPPMDVG
QGLEIRVFDNFPIKNMKSVYRVIALLAENSRVYHADDYIYDNQGWKASAQ
EAMKEGWNGILATEYIHSLERNLNVDLSSLGGNTQAFAVFSEVYTQLVHL
RSDGFWTGLLLDDVDLEPVLHNPNRYSWESAAVDAGVTPASIRDALGVRG
DDSHGMVQLADAVGDCTDDIEDLLYLAQTFSMVKALEMNRDGSVQAAEFH
PESNDETMDMRTCAASASQPW*
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mRNA from alignment at Ecto-sp13_S_contig10119:622..3991+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10119.150.1 ID=mRNA_Ecto-sp13_S_contig10119.150.1|Name=mRNA_Ecto-sp13_S_contig10119.150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3370bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10119:622..3991+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGATTGGATCTCCCCGCTCTGGCATGAGCAACCAGCTGGGCTTATACACA AGGACGAGGGGCGAAGACTACATGTGTTCGACCTGCACCACGTGCGACCT GAAGGACTACACGGGCAGCTACCACGTCTCCATCTCGCTGCCGAAGGACC CGAACGGCTGGGTCTTGTACAACGAGAGCGCCCTCACCAAGGACGGGAGC ACGTGTTCGGAGACGTACGTGCGGGAGTTCGACGATAGCGAGACCCCGGT CGGCGTCTGGGTGGACGCGCACATGGTAGGTGCCGCTGAGGAGCAAGGTG CCGCAATTTTGTTTGCAACTCGTGTTAGAAGGGGCTCACCGCTGAGATGG GTCTGAAAAAAAGGTATAGTAGTAGCTGGAAAAGTCGTCTTTTCTGGGAG AGGCCTGAAAAACGGGAGGGTTAATCCCCAACTTGAAGCCGAAAAATATC GATACCTCAATGAGTCGATATATAAAATATCGATACCTCAATGAGTCGTT CTGCTGATGTTGCCTCAGTGCCACCCTTCCAACCCAGTACTCAACTTCCT TCCCTGTTCCCGTCGTTCTACTCACATTTTCCTTCGCCGAAAACACAGAA CTTCGCCAACATGGTCCAATGGATAGAACCCCTACTTATGGCTGTATTTG GGTCGCCGGATGCCGACGCTGTCTGCGATGACGGCAAGTTCATCGAGGGC TCGTACCGCACCATGTCAGCGGGATGGGGCGTCCCCGGCACAACAGGTAC AGACAGTACCGGCTTTTTTTGTGGAAAGCACCACACAATTGGTTTTATCC CACTTTCTTCTTCTGGGAGCTTGGACGATCCTCCACTATCTACAGCAATC ACAATGCCCAAAACAAATTTGCTCCTCCCTCAGACGCCATGATGTTGAGT GTGAGTCCTACTGTACCTTTCCTTCTCCGAATCAGACGTTCGCACCTTCA CGACCAACGGAACGGGACGGTACGCCCAATACGGCTTCGACTGGTTGCTG GAGGTAAGCCTATTTGGCATAATTAAATGGTAGTTTAGAGGGCGAACTGA GTAGAGCCTGCCGGTAATACATGGCAAAGTCTGCCCACCCCTCTCCCCCT TCGAACCTGGCTGATTTCCCATGCCACCAGCATGCGGGTGCTCCCTCCCT CCCTCCGTCCCTCTCTCTTTATCTCTCTCTTTCTCTCTCGTTATCTCTTA CCCTCTGTCAGTCGTGACCGCATCCAGTTAGACCAACGCTTCTCACGTTC GTAAGGCCGCTACTCAGAAGAGAGCATGTTGAAATTCGTCACTCAAGCAT TAACAATAGACCAATGATGTTCGGTCGCGACGCACCTCGAAAAATCATTT TTCCCACAAGTAACTGTCGTCTGTTGTTGTGATTCGCTATATTTTGGCGC CGTGGCGAATAGGTGGCACCCTCCCCTCACGCCGGCATATTCGGGTGCAC GGAAGAGGGCATGGGCTCGGACATCCGGACCAAGTCGTCCGTCGACGAGC ACTTGATGGCCCCGGGCAGCGAGCTACCGCCGATGGACGTGGGGCAGGGG CTCGAGATCCGGGTGTTCGACAACTTCCCCATAAAGAACATGAAGTCCGT GTACCGCGTGATCGCCCTCCTGGCGGAGAACTCTCGGGTCTACCACGCGG ACGATTACATCTACGACAACCAAGGGTGGAAGGCATCGGCGCAGGAGGCC ATGAAGGAAGGGTGGAACGGCATCCTGGCCACCGAGTACATCCACAGCCT CGAACGCAACCTGAACGTAGACCTCAGCAGCCTAGGCGGTAACACCCAAG CGTTCGCCGTGTTCAGTGAGGTTTACACCCAGCTGGTCCACCTTCGCTCG GACGGGTTCTGGACTGGACTTCTGCTGGATGATGTCGACCTGGAACCCGT GCTCCACAATCCCAACCGCTACAGCTGGGTAAGTGCTCACCTTTGTTTCG AGTCTGGTAAACACAATGCTTGTACGTAGTTCCCCAACAGACGCAACGTT TTCGTCAAAGATCACAATCCCCTTCGGTAAATAGAAGCTCTCAGCTCGCA TAGCACATCACGTGCTCACGTGCGTCCATCATACACCTTCTCCATTATAG TTCTTCAAGTTTCTTGGTGTACTGTTGTGGGTGGCTCTAGGGAGGGACAA GTGTTCGGGCATTTTGCCGACGCACGTTTTTTTTTCGCTCGCTCTCCGAC ACCCAAACAAATGTGACACCCGCCATGTCATTCGCCAACGTCTAGGCCCT GCTTCCCACAGCTAGGTTTAATGCGGCCGTCGCTTGTGTGTTTTTATATC CGGCCATCCCTTAGGAAAGCGCCGCCGTCGATGCAGGAGTTACGCCCGCC TCGATCAGGGATGCCCTCGGCGTCCGCGGCGATGACTCCCACGGCATGGT CCAGCTTGCTGACGCCGTCGGTGACTGCACGGATGACATCGAAGACCTTT TGTACCTTGCCCAGACTTTCTCCATGGTGAAGGCGCTGGAGATGAACCGC GATGGGTCCGTGCAAGCGGCAGAGTTCCACCCCGAAAGTAACGACGAGAC CATGGATATGCGCACTTGCGCTGCTTCAGCTTCGCAGCCCTGGTGAGCGT AGCGACCATTAACGGGATCAAGGGCCTGCTTCATGCTCCACGAACGCGTA CCTTTGTCGCCATTTTTTGTGGAGGCCTCTCGGGTTTGTTGAATTGTTTA GTTTAGGTATCAAACGGCGTACTCTTAGGCCTGATCTTCAATCGAACAGA CCAGCGCGTGGCATCCACTTGAATTTGTAAGAGTAGGAAAATGCTGTTGG TGTGCATTTTGGGTTCGTTCGCCGATATGAATCGGTGGTGTGAACGCCAA CGTCGGACTGCGTTCTGTATAGGTTGCCCGTAGGCAGGGAAGCAACCTCA ATAGCAGCAGTGTCTTTCCCCAGGCGCCTGCTCCCTAATTTGCTGGCGCC ACGATGCCCTTAATAATTGGATGGGGCTAGGTTGGGATCGTCGAGGCCTG CCATAGACCAACACACGCAGAATAAGGGCTCAATTTCGAGTTGGCAACGT CACCAAGAACGAGAGACAAATGGCATCGGTTTCTGGTTGTTCTGTGCCCG GTACTTTCGGCATCATACGTTCGTCGCATGTATGGCGTGTAGAGCCAGCG ACTAACTGATGACCACCACCCGTATGAGGCGCGGTGTCGTCTGGTTCTAC GTACATAGCTGCGTGCATGATGTGCCACGTTTCTGTGATGTATCCATCCA GACGGTTGAATGCGAGTTAATTACGTAGTTTAGTAGAGTTCCACTCGAGG ATCTAGATGTGTGTCCCATTTGTTTTTGTCCCATCCATTTTTGCGACAGC TCCCCTGAGCAAGGTGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10119:622..3991+

>mRNA_Ecto-sp13_S_contig10119.150.1 ID=mRNA_Ecto-sp13_S_contig10119.150.1|Name=mRNA_Ecto-sp13_S_contig10119.150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10119:622..3991+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCAACCAGCTGGGCTTATACACAAGGACGAGGGGCGAAGACTACAT
GTGTTCGACCTGCACCACGTGCGACCTGAAGGACTACACGGGCAGCTACC
ACGTCTCCATCTCGCTGCCGAAGGACCCGAACGGCTGGGTCTTGTACAAC
GAGAGCGCCCTCACCAAGGACGGGAGCACGTGTTCGGAGACGTACGTGCG
GGAGTTCGACGATAGCGAGACCCCGGTCGGCGTCTGGGTGGACGCGCACA
TGAACTTCGCCAACATGGTCCAATGGATAGAACCCCTACTTATGGCTGTA
TTTGGGTCGCCGGATGCCGACGCTGTCTGCGATGACGGCAAGTTCATCGA
GGGCTCGTACCGCACCATGTCAGCGGGATGGGGCGTCCCCGGCACAACAG
ACGTTCGCACCTTCACGACCAACGGAACGGGACGGTACGCCCAATACGGC
TTCGACTGGTTGCTGGAGGTGGCACCCTCCCCTCACGCCGGCATATTCGG
GTGCACGGAAGAGGGCATGGGCTCGGACATCCGGACCAAGTCGTCCGTCG
ACGAGCACTTGATGGCCCCGGGCAGCGAGCTACCGCCGATGGACGTGGGG
CAGGGGCTCGAGATCCGGGTGTTCGACAACTTCCCCATAAAGAACATGAA
GTCCGTGTACCGCGTGATCGCCCTCCTGGCGGAGAACTCTCGGGTCTACC
ACGCGGACGATTACATCTACGACAACCAAGGGTGGAAGGCATCGGCGCAG
GAGGCCATGAAGGAAGGGTGGAACGGCATCCTGGCCACCGAGTACATCCA
CAGCCTCGAACGCAACCTGAACGTAGACCTCAGCAGCCTAGGCGGTAACA
CCCAAGCGTTCGCCGTGTTCAGTGAGGTTTACACCCAGCTGGTCCACCTT
CGCTCGGACGGGTTCTGGACTGGACTTCTGCTGGATGATGTCGACCTGGA
ACCCGTGCTCCACAATCCCAACCGCTACAGCTGGGAAAGCGCCGCCGTCG
ATGCAGGAGTTACGCCCGCCTCGATCAGGGATGCCCTCGGCGTCCGCGGC
GATGACTCCCACGGCATGGTCCAGCTTGCTGACGCCGTCGGTGACTGCAC
GGATGACATCGAAGACCTTTTGTACCTTGCCCAGACTTTCTCCATGGTGA
AGGCGCTGGAGATGAACCGCGATGGGTCCGTGCAAGCGGCAGAGTTCCAC
CCCGAAAGTAACGACGAGACCATGGATATGCGCACTTGCGCTGCTTCAGC
TTCGCAGCCCTGGTGA
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