mRNA_Ecto-sp13_S_contig11744.1500.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11744.1500.1
Unique NamemRNA_Ecto-sp13_S_contig11744.1500.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11744.1500.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 5.000e-22
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:  226 MARSLFGVLM-PLLLLL------LGQQPPLAQGQAITVNRTAGEVEIGTCEGLKKNAELGIDISIVVTANLRC 423
            MA  +FGVL+ PL L        LGQQPPLAQGQ ITVNRTAGEVE+GTCEGLKKNAELGIDISIVVTANLRC
Sbjct:    1 MATRVFGVLLLPLPLXXXXXXXXLGQQPPLAQGQVITVNRTAGEVEVGTCEGLKKNAELGIDISIVVTANLRC 73
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BLAST of mRNA_Ecto-sp13_S_contig11744.1500.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 8.130e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:  310 ITVNRTAGEVEIGTCEGLKKNAELGIDISIVVTANLRC 423
            ITVNRTAGEVE+GTCEGLKKNAELGIDISIVVTANLRC
Sbjct:   57 ITVNRTAGEVEVGTCEGLKKNAELGIDISIVVTANLRC 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11744.1500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAJ9_9PHAE5.000e-2278.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G311_ECTSI8.130e-1497.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11744contigEcto-sp13_S_contig11744:4839..5261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size423
Hectar predicted targeting categorysignal peptide
Exons1
Cds size198
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.4182565-UTR-Ecto-sp13_S_contig11744:4838..50631681462618.4182565-UTR-Ecto-sp13_S_contig11744:4838..5063Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11744 4839..5063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462618.4294608-CDS-Ecto-sp13_S_contig11744:5063..52611681462618.4294608-CDS-Ecto-sp13_S_contig11744:5063..5261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11744 5064..5261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11744.1500.1prot_Ecto-sp13_S_contig11744.1500.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11744 5064..5261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11744.1500.1

>prot_Ecto-sp13_S_contig11744.1500.1 ID=prot_Ecto-sp13_S_contig11744.1500.1|Name=mRNA_Ecto-sp13_S_contig11744.1500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MARSLFGVLMPLLLLLLGQQPPLAQGQAITVNRTAGEVEIGTCEGLKKNA
ELGIDISIVVTANLRC
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mRNA from alignment at Ecto-sp13_S_contig11744:4839..5261+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11744.1500.1 ID=mRNA_Ecto-sp13_S_contig11744.1500.1|Name=mRNA_Ecto-sp13_S_contig11744.1500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11744:4839..5261+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCTGGTGTGTGCAACACAAGCGTGAATACAAAGAAAAGGGTCTGGCTG
TTTACTGGCCCCACAACTGGTGTGCGCTGGCACGGCGGTGAATGCGGCTT
GCTGGCACAATAAGGGTGCTGTGCGTTCTCCCACACTCTACGAGCTTCTC
GGCCAGCGGTGCGTGCGCCGCCGGCGTAGTGGCGTGGTGTCGCCGGCGAA
CAGCAGTGTCGCGAGAGCAGAAAAAATGGCGAGAAGCTTGTTCGGGGTGC
TGATGCCGCTGCTGCTGCTTCTGCTCGGACAGCAGCCTCCTCTCGCGCAG
GGGCAGGCGATCACCGTTAACCGCACCGCCGGCGAGGTCGAGATCGGTAC
TTGCGAGGGGCTCAAGAAGAACGCGGAGCTGGGGATCGACATCTCGATCG
TCGTCACCGCGAACCTCCGCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11744:4839..5261+

>mRNA_Ecto-sp13_S_contig11744.1500.1 ID=mRNA_Ecto-sp13_S_contig11744.1500.1|Name=mRNA_Ecto-sp13_S_contig11744.1500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11744:4839..5261+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAGAAGCTTGTTCGGGGTGCTGATGCCGCTGCTGCTGCTTCTGCT
CGGACAGCAGCCTCCTCTCGCGCAGGGGCAGGCGATCACCGTTAACCGCA
CCGCCGGCGAGGTCGAGATCGGTACTTGCGAGGGGCTCAAGAAGAACGCG
GAGCTGGGGATCGACATCTCGATCGTCGTCACCGCGAACCTCCGCTGC
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