prot_Ecto-sp13_S_contig11744.1500.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig11744.1500.1
Unique Nameprot_Ecto-sp13_S_contig11744.1500.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length66
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11744.1500.1 vs. uniprot
Match: A0A6H5KAJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ9_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.580e-23
Identity = 57/73 (78.08%), Postives = 60/73 (82.19%), Query Frame = 0 
Query:    1 MARSLFGVLM-PLLLLL------LGQQPPLAQGQAITVNRTAGEVEIGTCEGLKKNAELGIDISIVVTANLRC 66
            MA  +FGVL+ PL L        LGQQPPLAQGQ ITVNRTAGEVE+GTCEGLKKNAELGIDISIVVTANLRC
Sbjct:    1 MATRVFGVLLLPLPLXXXXXXXXLGQQPPLAQGQVITVNRTAGEVEVGTCEGLKKNAELGIDISIVVTANLRC 73
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BLAST of mRNA_Ecto-sp13_S_contig11744.1500.1 vs. uniprot
Match: D7G311_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G311_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 4.710e-15
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 0 
Query:   29 ITVNRTAGEVEIGTCEGLKKNAELGIDISIVVTANLRC 66
            ITVNRTAGEVE+GTCEGLKKNAELGIDISIVVTANLRC
Sbjct:   57 ITVNRTAGEVEVGTCEGLKKNAELGIDISIVVTANLRC 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11744.1500.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAJ9_9PHAE3.580e-2378.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G311_ECTSI4.710e-1597.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..66
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.856

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11744contigEcto-sp13_S_contig11744:5064..5261 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11744.1500.1mRNA_Ecto-sp13_S_contig11744.1500.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig11744 4839..5261 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig11744.1500.1 ID=prot_Ecto-sp13_S_contig11744.1500.1|Name=mRNA_Ecto-sp13_S_contig11744.1500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MARSLFGVLMPLLLLLLGQQPPLAQGQAITVNRTAGEVEIGTCEGLKKNA
ELGIDISIVVTANLRC
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