mRNA_Ecto-sp13_S_contig101167.148.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig101167.148.1
Unique NamemRNA_Ecto-sp13_S_contig101167.148.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A6H5KM35_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM35_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.230e-22
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAATE 156
            KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT GDAATE
Sbjct:   10 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATE 61          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: D8LQC6_ECTSI (SAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC6_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.120e-21
Identity = 50/52 (96.15%), Postives = 50/52 (96.15%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAATE 156
            KVSELK ELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT GDAATE
Sbjct:   10 KVSELKTELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTVGDAATE 61          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: UPI0006D4CA98 (heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform X1 n=2 Tax=Halyomorpha halys TaxID=286706 RepID=UPI0006D4CA98)

HSP 1 Score: 53.1 bits (126), Expect = 9.550e-7
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDA 147
            KV EL+AELASR LD KGNKA L +RLQ ALD+E  G  S  TP  G+A
Sbjct:    7 KVVELRAELASRGLDTKGNKAALVERLQEALDKETGGVPSEKTPDNGNA 55          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: B7G614_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G614_PHATC)

HSP 1 Score: 52.0 bits (123), Expect = 1.580e-6
Identity = 28/45 (62.22%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT 135
            KV+EL+ EL  R L V GNK DL  RLQA LDEEEFG I  P  T
Sbjct:   10 KVAELRTELERRGLPVSGNKPDLINRLQARLDEEEFGLIDAPATT 54          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A835Z395_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z395_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 3.290e-6
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 111
            KV++LKAELA R+LD  G K DL QRLQAALDEEEFG
Sbjct:   10 KVADLKAELAKRNLDSTGLKQDLIQRLQAALDEEEFG 46          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A7S3PZ56_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ56_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.110e-5
Identity = 29/50 (58.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGA--ISMPTPTAGD 144
            KV+EL+A LASR L   G KADL+ RLQA LDEEEFG   ++ P P+ G+
Sbjct:   10 KVAELRAALASRGLPSDGLKADLSNRLQARLDEEEFGMDEVTPPPPSTGE 59          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A7S1D3T5_CYCTE (Hypothetical protein n=2 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D3T5_CYCTE)

HSP 1 Score: 49.3 bits (116), Expect = 2.080e-5
Identity = 27/45 (60.00%), Postives = 30/45 (66.67%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPT 135
            KVSEL+A L  R L  +G KADL  RLQA LDEEEFG +  P  T
Sbjct:   33 KVSELRAALQKRGLSTEGLKADLVNRLQARLDEEEFGMVVAPQST 77          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A7S3HLW8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLW8_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 2.120e-5
Identity = 26/37 (70.27%), Postives = 29/37 (78.38%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFG 111
            KV +LK ELA R+LD  G KADL QRLQ ALD+EEFG
Sbjct:   16 KVQDLKDELAKRNLDTNGLKADLQQRLQTALDDEEFG 52          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A425D5Z6_9STRA (SAP domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5Z6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.330e-5
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAATEV 159
            KV+E+K ELA R L   G K +L QRL+ ALDEEEFG +  P  T   AA EV
Sbjct:   10 KVNEIKDELAKRGLSQAGLKPELIQRLELALDEEEFGGMDGPDSTPVSAAVEV 62          
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Match: A0A8B9C943_9AVES (SAP domain-containing protein n=2 Tax=Galloanserae TaxID=1549675 RepID=A0A8B9C943_9AVES)

HSP 1 Score: 45.8 bits (107), Expect = 3.640e-5
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 1
Query:    1 KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTP 132
            KVSELK EL  R L  KG KADL +RLQAALD+EE G      P
Sbjct:   12 KVSELKEELKKRRLSDKGLKADLMERLQAALDQEEAGXXXXVNP 55          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig101167.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5KM35_9PHAE1.230e-2298.08SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQC6_ECTSI3.120e-2196.15SAP domain-containing protein n=2 Tax=Ectocarpus T... [more]
UPI0006D4CA989.550e-763.27heterogeneous nuclear ribonucleoprotein U-like pro... [more]
B7G614_PHATC1.580e-662.22Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A835Z395_9STRA3.290e-675.68SAP domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3PZ56_9STRA1.110e-558.00Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1D3T5_CYCTE2.080e-560.00Hypothetical protein n=2 Tax=Cyclophora tenuis Tax... [more]
A0A7S3HLW8_9STRA2.120e-570.27Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A425D5Z6_9STRA2.330e-554.72SAP domain-containing protein n=7 Tax=Aphanomyces ... [more]
A0A8B9C943_9AVES3.640e-561.36SAP domain-containing protein n=2 Tax=Galloanserae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig101167contigEcto-sp13_S_contig101167:61..219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462508.869593-CDS-Ecto-sp13_S_contig101167:60..2191681462508.869593-CDS-Ecto-sp13_S_contig101167:60..219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig101167 61..219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig101167.148.1prot_Ecto-sp13_S_contig101167.148.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig101167 61..219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig101167.148.1

>prot_Ecto-sp13_S_contig101167.148.1 ID=prot_Ecto-sp13_S_contig101167.148.1|Name=mRNA_Ecto-sp13_S_contig101167.148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
KVSELKAELASRSLDVKGNKADLAQRLQAALDEEEFGAISMPTPTAGDAA
TEV
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mRNA from alignment at Ecto-sp13_S_contig101167:61..219-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig101167.148.1 ID=mRNA_Ecto-sp13_S_contig101167.148.1|Name=mRNA_Ecto-sp13_S_contig101167.148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101167:61..219- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTCCGAGCTGAAAGCCGAGCTGGCAAGCAGGAGTCTGGATGTCAA GGGCAACAAGGCAGACTTGGCCCAGCGGCTGCAGGCGGCCCTCGACGAGG AAGAGTTTGGCGCTATCAGCATGCCTACACCGACCGCCGGCGATGCTGCA ACCGAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig101167:61..219-

>mRNA_Ecto-sp13_S_contig101167.148.1 ID=mRNA_Ecto-sp13_S_contig101167.148.1|Name=mRNA_Ecto-sp13_S_contig101167.148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig101167:61..219- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGTTTCCGAGCTGAAAGCCGAGCTGGCAAGCAGGAGTCTGGATGTCAA
GGGCAACAAGGCAGACTTGGCCCAGCGGCTGCAGGCGGCCCTCGACGAGG
AAGAGTTTGGCGCTATCAGCATGCCTACACCGACCGCCGGCGATGCTGCA
ACCGAGGTT
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