mRNA_Ecto-sp13_S_contig11712.1479.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11712.1479.1
Unique NamemRNA_Ecto-sp13_S_contig11712.1479.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11712.1479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11712contigEcto-sp13_S_contig11712:3941..4646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size452
Hectar predicted targeting categoryother localisation
Exons2
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.7953951-CDS-Ecto-sp13_S_contig11712:3940..41451681462616.7953951-CDS-Ecto-sp13_S_contig11712:3940..4145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11712 3941..4145 -
1681462616.8058434-CDS-Ecto-sp13_S_contig11712:4399..44671681462616.8058434-CDS-Ecto-sp13_S_contig11712:4399..4467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11712 4400..4467 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462616.8165886-UTR-Ecto-sp13_S_contig11712:4467..46461681462616.8165886-UTR-Ecto-sp13_S_contig11712:4467..4646Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11712 4468..4646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11712.1479.1prot_Ecto-sp13_S_contig11712.1479.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11712 3941..4467 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11712.1479.1

>prot_Ecto-sp13_S_contig11712.1479.1 ID=prot_Ecto-sp13_S_contig11712.1479.1|Name=mRNA_Ecto-sp13_S_contig11712.1479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
MLQYRLQVGLLREIDDCNHMHARDNEQSEPGAVTRSTGSHWVSLRTRLGI
SESEVEALRAKRTTTATGLANLVREDLWSGFTGGSGSGSEH
back to top

mRNA from alignment at Ecto-sp13_S_contig11712:3941..4646-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11712.1479.1 ID=mRNA_Ecto-sp13_S_contig11712.1479.1|Name=mRNA_Ecto-sp13_S_contig11712.1479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11712:3941..4646- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCTTGGTCCAGCATTTCTTCCGACAAACTGGGGGAGCCCTCGGGACA
GAAACATGATGCGGGTCACGGCGTTTCGTCTTTGTCCGGGCGTTATACCA
CGAAGATCACCATGGATCCTCTTCTCAGAAGAGCCGTTGAAATGTCGATG
AAATCGATCTTGACACCGCTTCGGCCACAATGCTACAATACCGGCTGCAG
GTTGGACTATTGCGAGAAATCGATGACTGCAACCACATGCATGCAAGGTG
CGCACGAGCTTTGTTTCCCAAGTCAGGTATTGGAAAATGAGAGAATGGTG
CAAACACACCTCGAAAAAATAGAAACACCCACCACCGTGAAAACATCAAG
ACGAAGCGCGTACGACTGTTGGTGGTGCACTCTGACAATTTCATGCTGTC
GACGTGCTACACGTCGTCGGAGAGATGCGTGGTCGAAAGTGAAACAAAAT
GAAACGAGAATTAAGTGAGAGCACCCTCCCCATCATTCACGACACGACCA
GGGACAATGAGCAGAGCGAGCCGGGTGCAGTGACGCGATCGACGGGTAGC
CACTGGGTATCACTACGGACGCGTCTCGGGATCTCAGAGTCAGAGGTGGA
AGCATTGCGAGCAAAGAGAACGACCACAGCTACAGGGCTTGCAAATCTCG
TTCGGGAGGACCTTTGGTCTGGTTTCACAGGCGGAAGTGGCAGCGGGAGC
GAACAC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11712:3941..4646-

>mRNA_Ecto-sp13_S_contig11712.1479.1 ID=mRNA_Ecto-sp13_S_contig11712.1479.1|Name=mRNA_Ecto-sp13_S_contig11712.1479.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11712:3941..4646- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTACAATACCGGCTGCAGGTTGGACTATTGCGAGAAATCGATGACTG
CAACCACATGCATGCAAGGGACAATGAGCAGAGCGAGCCGGGTGCAGTGA
CGCGATCGACGGGTAGCCACTGGGTATCACTACGGACGCGTCTCGGGATC
TCAGAGTCAGAGGTGGAAGCATTGCGAGCAAAGAGAACGACCACAGCTAC
AGGGCTTGCAAATCTCGTTCGGGAGGACCTTTGGTCTGGTTTCACAGGCG
GAAGTGGCAGCGGGAGCGAACAC
back to top